Wall clock time and date at job start Mon Mar 30 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63493 * 0.02562 * 4 2 1 6 6 C 1.53193 * 108.78047 * 126.36515 * 5 4 2 7 7 C 1.53046 * 109.30894 * 54.63195 * 6 5 4 8 8 C 1.53030 * 109.54094 * 298.63834 * 7 6 5 9 9 H 1.08995 * 109.49743 * 301.38074 * 8 7 6 10 10 C 1.53001 * 109.49546 * 181.31496 * 8 7 6 11 11 H 1.08997 * 109.47389 * 299.99799 * 10 8 7 12 12 C 1.50697 * 109.46976 * 60.00125 * 10 8 7 13 13 H 1.07998 * 120.00377 * 359.97438 * 12 10 8 14 14 C 1.37883 * 119.99664 * 179.97438 * 12 10 8 15 15 N 1.31508 * 120.00445 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99758 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47219 * 60.00035 * 16 14 12 18 18 H 1.48502 * 109.47220 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47096 * 300.00278 * 16 14 12 20 20 C 1.53006 * 109.46951 * 179.97438 * 10 8 7 21 21 N 1.46894 * 109.47091 * 65.00279 * 20 10 8 22 22 C 1.46928 * 120.63036 * 179.72051 * 4 2 1 23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 26 26 H 1.09002 * 109.58604 * 246.15897 * 5 4 2 27 27 H 1.09004 * 109.58732 * 6.43497 * 5 4 2 28 28 H 1.08996 * 109.49720 * 174.58949 * 6 5 4 29 29 H 1.08999 * 109.49500 * 294.65809 * 6 5 4 30 30 H 1.09003 * 109.45149 * 58.66059 * 7 6 5 31 31 H 1.09005 * 109.45574 * 178.62518 * 7 6 5 32 32 H 0.96999 * 120.00287 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46850 * 185.00470 * 20 10 8 34 34 H 1.08993 * 109.47154 * 305.00009 * 20 10 8 35 35 H 1.00897 * 111.00378 * 56.04636 * 21 20 10 36 36 H 1.00905 * 111.00248 * 180.02562 * 21 20 10 37 37 H 1.09003 * 109.58531 * 353.41838 * 22 4 2 38 38 H 1.09000 * 109.58854 * 113.84262 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9684 -3.2994 -1.1670 7 6 3.4898 -3.4343 -1.0706 8 6 4.1336 -2.0494 -1.1671 9 1 3.8500 -1.5812 -2.1096 10 6 5.6559 -2.1883 -1.1035 11 1 5.9391 -2.6554 -0.1602 12 6 6.1305 -3.0435 -2.2500 13 1 5.4177 -3.4478 -2.9533 14 6 7.4750 -3.3098 -2.4009 15 7 8.3430 -2.8179 -1.5442 16 14 8.0634 -4.3692 -3.8225 17 1 7.6773 -3.7326 -5.1073 18 1 9.5410 -4.5043 -3.7607 19 1 7.4396 -5.7137 -3.7291 20 6 6.2990 -0.8034 -1.2006 21 7 5.9317 -0.0092 -0.0208 22 6 3.6500 -1.1834 -0.0056 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5139 -0.8900 26 1 1.6425 -2.9694 0.9400 27 1 0.3918 -2.2657 -0.1150 28 1 1.5118 -4.2881 -1.1217 29 1 1.7043 -2.8195 -2.1093 30 1 3.7540 -3.8920 -0.1172 31 1 3.8513 -4.0603 -1.8865 32 1 9.2888 -3.0055 -1.6502 33 1 7.3830 -0.9085 -1.2449 34 1 5.9457 -0.3011 -2.1011 35 1 6.1912 -0.4847 0.8304 36 1 6.3441 0.9109 -0.0614 37 1 4.0262 -0.1677 -0.1279 38 1 4.0148 -1.5998 0.9333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:04 Heat of formation + Delta-G solvation = -46.348719 kcal Electronic energy + Delta-G solvation = -18362.875989 eV Core-core repulsion = 15625.644900 eV Total energy + Delta-G solvation = -2737.231089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66306 -37.31729 -35.16079 -32.38326 -32.22185 -30.61125 -29.57310 -27.16561 -24.75253 -23.66026 -22.39383 -20.52162 -19.11890 -18.42652 -16.60796 -16.55265 -15.24558 -15.04423 -14.64987 -14.42071 -13.81450 -13.76648 -13.39805 -12.98873 -12.75510 -12.46175 -12.36098 -12.18287 -11.87264 -11.82482 -11.05797 -10.96017 -10.74787 -10.62346 -10.29105 -10.19740 -10.03741 -9.52614 -9.46241 -9.09772 -8.98224 -8.40897 -8.00509 -7.33534 -6.02451 -4.09262 3.04646 3.28516 3.33685 3.36055 3.56126 4.39948 4.91462 5.10654 5.25289 5.32524 5.33355 5.47362 5.50441 5.74276 5.76402 5.85265 5.98552 6.03479 6.25632 6.31995 6.51918 6.60738 6.74432 6.88051 6.96403 7.10830 7.15439 7.29099 7.44184 7.58696 7.88570 7.97295 8.01162 8.12366 8.37393 8.49048 8.65220 8.95284 9.55188 11.01441 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.007183 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.807841 B = 3897.310982 C = 4496.493448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.504 3.496 3 O -0.550 6.550 4 N -0.609 5.609 5 C 0.105 3.895 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.079 4.079 9 H 0.052 0.948 10 C 0.062 3.938 11 H 0.024 0.976 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.055 3.945 21 N -0.850 5.850 22 C 0.099 3.901 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.329 0.671 36 H 0.319 0.681 37 H 0.144 0.856 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 0.226 3.376 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.292 3.708 3 O -0.428 6.428 4 N -0.343 5.343 5 C -0.018 4.018 6 C -0.174 4.174 7 C -0.147 4.147 8 C -0.098 4.098 9 H 0.071 0.929 10 C 0.043 3.957 11 H 0.042 0.958 12 C -0.546 4.546 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.074 4.074 21 N -0.377 5.377 22 C -0.021 4.021 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.162 0.838 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.384 0.693 3.144 12.796 hybrid contribution 1.383 -0.880 -0.637 1.759 sum -11.001 -0.187 2.507 11.285 Atomic orbital electron populations 1.21937 0.93243 1.04628 1.03501 1.20624 0.90058 0.83616 0.76498 1.90694 1.70681 1.31006 1.50422 1.48482 1.08862 1.04926 1.71992 1.21716 0.95897 0.85204 0.99017 1.21966 0.98522 0.98880 0.98006 1.21552 0.92070 0.98880 1.02182 1.21341 0.98192 0.93345 0.96964 0.92924 1.18636 0.87871 0.92004 0.97222 0.95752 1.21149 0.91991 1.30168 1.11331 0.92428 1.24982 0.96980 0.95934 0.96142 1.69853 1.02097 1.45024 1.36189 0.86688 0.77513 0.81000 0.82975 1.20320 1.21395 1.20298 1.22103 1.01492 0.94082 0.89769 1.59271 1.65787 1.06413 1.06208 1.22640 0.75249 1.06677 0.97579 0.89616 0.90012 0.89905 0.91930 0.90779 0.91767 0.92121 0.92878 0.90936 0.93012 0.91645 0.94036 0.85999 0.87021 0.83834 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.67 36.01 0.31 -1.61 16 2 C 0.50 8.43 7.81 -10.98 -0.09 8.35 16 3 O -0.55 -11.58 16.50 5.56 0.09 -11.49 16 4 N -0.61 -10.07 2.98 -173.05 -0.52 -10.58 16 5 C 0.11 1.36 6.34 -3.71 -0.02 1.34 16 6 C -0.14 -1.91 6.08 -26.61 -0.16 -2.08 16 7 C -0.11 -1.98 4.94 -26.69 -0.13 -2.11 16 8 C -0.08 -1.63 1.87 -90.74 -0.17 -1.80 16 9 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 10 C 0.06 1.48 1.66 -91.77 -0.15 1.32 16 11 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.51 -13.28 7.82 -34.44 -0.27 -13.55 16 13 H 0.06 1.49 6.71 -52.49 -0.35 1.14 16 14 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 15 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.06 1.28 5.94 -3.82 -0.02 1.26 16 21 N -0.85 -16.70 5.89 -10.37 -0.06 -16.76 16 22 C 0.10 1.91 4.52 -3.95 -0.02 1.90 16 23 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 24 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 25 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.42 6.58 -51.93 -0.34 1.08 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.07 1.70 5.95 -51.93 -0.31 1.39 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.33 6.26 8.99 -39.29 -0.35 5.90 16 36 H 0.32 5.73 9.08 -39.29 -0.36 5.37 16 37 H 0.14 3.08 4.39 -51.93 -0.23 2.86 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -29.60 293.28 -7.28 -36.87 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.00 Total: 11.26 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.82 Total: -5.45 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.05 Total: -51.42 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.60 -7.28 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.475 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds