Wall clock time and date at job start Mon Mar 30 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63493 * 0.02562 * 4 2 1 6 6 C 1.53193 * 108.78047 * 126.36515 * 5 4 2 7 7 C 1.53046 * 109.30894 * 54.63195 * 6 5 4 8 8 C 1.53030 * 109.54094 * 298.63834 * 7 6 5 9 9 H 1.08995 * 109.49743 * 301.38074 * 8 7 6 10 10 C 1.53001 * 109.49546 * 181.31496 * 8 7 6 11 11 H 1.08997 * 109.47389 * 299.99799 * 10 8 7 12 12 C 1.50697 * 109.46976 * 60.00125 * 10 8 7 13 13 H 1.07998 * 120.00377 * 359.97438 * 12 10 8 14 14 C 1.37883 * 119.99664 * 179.97438 * 12 10 8 15 15 N 1.31508 * 120.00445 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99758 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47219 * 60.00035 * 16 14 12 18 18 H 1.48502 * 109.47220 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47096 * 300.00278 * 16 14 12 20 20 C 1.53006 * 109.46951 * 179.97438 * 10 8 7 21 21 N 1.46894 * 109.47091 * 65.00279 * 20 10 8 22 22 C 1.46928 * 120.63036 * 179.72051 * 4 2 1 23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 26 26 H 1.09002 * 109.58604 * 246.15897 * 5 4 2 27 27 H 1.09004 * 109.58732 * 6.43497 * 5 4 2 28 28 H 1.08996 * 109.49720 * 174.58949 * 6 5 4 29 29 H 1.08999 * 109.49500 * 294.65809 * 6 5 4 30 30 H 1.09003 * 109.45149 * 58.66059 * 7 6 5 31 31 H 1.09005 * 109.45574 * 178.62518 * 7 6 5 32 32 H 0.96999 * 120.00287 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46850 * 185.00470 * 20 10 8 34 34 H 1.08993 * 109.47154 * 305.00009 * 20 10 8 35 35 H 1.00897 * 111.00378 * 56.04636 * 21 20 10 36 36 H 1.00905 * 111.00248 * 180.02562 * 21 20 10 37 37 H 1.09003 * 109.58531 * 353.41838 * 22 4 2 38 38 H 1.09000 * 109.58854 * 113.84262 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9684 -3.2994 -1.1670 7 6 3.4898 -3.4343 -1.0706 8 6 4.1336 -2.0494 -1.1671 9 1 3.8500 -1.5812 -2.1096 10 6 5.6559 -2.1883 -1.1035 11 1 5.9391 -2.6554 -0.1602 12 6 6.1305 -3.0435 -2.2500 13 1 5.4177 -3.4478 -2.9533 14 6 7.4750 -3.3098 -2.4009 15 7 8.3430 -2.8179 -1.5442 16 14 8.0634 -4.3692 -3.8225 17 1 7.6773 -3.7326 -5.1073 18 1 9.5410 -4.5043 -3.7607 19 1 7.4396 -5.7137 -3.7291 20 6 6.2990 -0.8034 -1.2006 21 7 5.9317 -0.0092 -0.0208 22 6 3.6500 -1.1834 -0.0056 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5139 -0.8900 26 1 1.6425 -2.9694 0.9400 27 1 0.3918 -2.2657 -0.1150 28 1 1.5118 -4.2881 -1.1217 29 1 1.7043 -2.8195 -2.1093 30 1 3.7540 -3.8920 -0.1172 31 1 3.8513 -4.0603 -1.8865 32 1 9.2888 -3.0055 -1.6502 33 1 7.3830 -0.9085 -1.2449 34 1 5.9457 -0.3011 -2.1011 35 1 6.1912 -0.4847 0.8304 36 1 6.3441 0.9109 -0.0614 37 1 4.0262 -0.1677 -0.1279 38 1 4.0148 -1.5998 0.9333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:04 Heat of formation + Delta-G solvation = -66.652662 kcal Electronic energy + Delta-G solvation = -18363.756434 eV Core-core repulsion = 15625.644900 eV Total energy + Delta-G solvation = -2738.111534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01513 -38.86127 -36.77135 -34.23774 -33.81349 -31.98848 -30.82663 -28.81062 -26.27611 -25.42523 -23.85368 -22.01929 -20.88167 -19.74762 -18.49319 -17.88175 -16.75511 -16.50813 -16.27846 -16.07986 -15.41013 -15.21907 -15.00816 -14.34881 -14.15541 -13.85720 -13.82079 -13.56753 -13.28623 -12.93458 -12.84981 -12.73237 -12.46212 -12.09989 -12.03423 -11.76075 -11.65916 -11.23475 -11.09654 -10.87069 -10.57577 -10.45346 -9.39594 -9.07436 -8.07352 -6.21338 1.41199 1.42029 1.49125 1.80128 2.31747 2.44056 3.17090 3.84172 4.01165 4.05819 4.17567 4.25005 4.39358 4.53445 4.61342 4.70363 4.74009 4.79341 4.84463 5.02316 5.05512 5.13796 5.21032 5.22915 5.28376 5.38378 5.52820 5.61796 5.71774 5.86424 5.98119 6.00855 6.26145 6.53196 6.69942 6.73426 6.94158 7.38012 7.45864 8.94122 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.007183 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.807841 B = 3897.310982 C = 4496.493448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.492 3.508 3 O -0.605 6.605 4 N -0.613 5.613 5 C 0.102 3.898 6 C -0.128 4.128 7 C -0.108 4.108 8 C -0.069 4.069 9 H 0.030 0.970 10 C 0.063 3.937 11 H -0.001 1.001 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 C 0.070 3.930 21 N -0.837 5.837 22 C 0.108 3.892 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.334 0.666 36 H 0.331 0.669 37 H 0.122 0.878 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 -0.812 3.457 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.283 3.717 3 O -0.487 6.487 4 N -0.345 5.345 5 C -0.020 4.020 6 C -0.166 4.166 7 C -0.145 4.145 8 C -0.089 4.089 9 H 0.048 0.952 10 C 0.044 3.956 11 H 0.017 0.983 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.060 4.060 21 N -0.365 5.365 22 C -0.014 4.014 23 H 0.107 0.893 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.017 -0.368 3.232 15.365 hybrid contribution 2.202 -0.541 -0.637 2.355 sum -12.815 -0.909 2.594 13.106 Atomic orbital electron populations 1.21941 0.88129 1.05867 1.06136 1.21740 0.92467 0.82573 0.74924 1.90668 1.72295 1.32921 1.52819 1.48559 1.07656 1.06725 1.71582 1.22017 0.97805 0.83145 0.99000 1.21920 0.95051 1.01078 0.98544 1.21483 0.95375 0.96512 1.01164 1.21144 0.96071 0.95257 0.96404 0.95172 1.18561 0.90391 0.91537 0.95139 0.98316 1.21458 0.92225 1.30419 1.11851 0.92647 1.25702 0.97219 0.97170 0.98417 1.69986 1.02120 1.46026 1.37622 0.85741 0.76921 0.79673 0.80101 1.20029 1.21275 1.19453 1.21769 0.99425 0.94334 0.90495 1.59192 1.65588 1.06561 1.05173 1.22174 0.77905 1.04802 0.96502 0.89338 0.86848 0.87353 0.90631 0.86393 0.88479 0.92430 0.93138 0.92953 0.93205 0.94467 0.95571 0.85391 0.85720 0.86086 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.67 71.24 0.62 -2.28 16 2 C 0.49 15.53 7.81 87.66 0.68 16.21 16 3 O -0.60 -25.46 16.50 -3.03 -0.05 -25.51 16 4 N -0.61 -19.09 2.98 -819.79 -2.44 -21.53 16 5 C 0.10 2.23 6.34 86.36 0.55 2.78 16 6 C -0.13 -3.21 6.08 30.67 0.19 -3.02 16 7 C -0.11 -3.84 4.94 30.62 0.15 -3.68 16 8 C -0.07 -2.91 1.87 -10.87 -0.02 -2.93 16 9 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 10 C 0.06 3.11 1.66 -11.54 -0.02 3.09 16 11 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 12 C -0.52 -27.97 7.82 25.60 0.20 -27.77 16 13 H 0.06 2.93 6.71 -2.91 -0.02 2.91 16 14 C 0.01 0.72 5.29 84.66 0.45 1.17 16 15 N -0.92 -52.11 11.29 21.45 0.24 -51.87 16 16 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 C 0.07 3.41 5.94 86.31 0.51 3.93 16 21 N -0.84 -34.00 5.89 -186.73 -1.10 -35.10 16 22 C 0.11 4.21 4.52 86.21 0.39 4.60 16 23 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 24 H 0.11 1.36 7.94 -2.39 -0.02 1.34 16 25 H 0.11 1.44 7.70 -2.38 -0.02 1.42 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.12 1.61 5.93 -2.39 -0.01 1.60 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.05 6.58 -2.38 -0.02 2.03 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.04 2.02 5.95 -2.39 -0.01 2.00 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.33 13.11 8.99 -89.70 -0.81 12.30 16 36 H 0.33 12.18 9.08 -89.69 -0.81 11.36 16 37 H 0.12 5.32 4.39 -2.39 -0.01 5.31 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -67.39 293.28 1.82 -65.58 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.56 Total: 31.17 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 3.70 Total: -7.90 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -3.30 Total: -108.50 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.39 1.82 -65.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.076 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds