Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99832 * 2 1 4 4 N 1.34775 * 120.00686 * 179.97438 * 2 1 3 5 5 C 1.46934 * 120.62560 * 4.82714 * 4 2 1 6 6 C 1.53184 * 108.77504 * 233.60899 * 5 4 2 7 7 C 1.53040 * 109.31595 * 305.36539 * 6 5 4 8 8 C 1.53040 * 109.53656 * 61.36540 * 7 6 5 9 9 H 1.09000 * 109.49797 * 58.61839 * 8 7 6 10 10 C 1.53003 * 109.49818 * 178.68764 * 8 7 6 11 11 H 1.09002 * 109.46941 * 302.83797 * 10 8 7 12 12 C 1.50695 * 109.47200 * 62.84562 * 10 8 7 13 13 H 1.07994 * 119.99998 * 359.97438 * 12 10 8 14 14 C 1.37883 * 119.99584 * 180.02562 * 12 10 8 15 15 N 1.31515 * 119.99602 * 179.97438 * 14 12 10 16 16 Si 1.86788 * 120.00210 * 359.97438 * 14 12 10 17 17 H 1.48507 * 109.47250 * 270.00195 * 16 14 12 18 18 H 1.48500 * 109.47192 * 30.00272 * 16 14 12 19 19 H 1.48499 * 109.47391 * 150.00378 * 16 14 12 20 20 C 1.53003 * 109.47122 * 182.84508 * 10 8 7 21 21 N 1.46908 * 109.47023 * 63.13757 * 20 10 8 22 22 C 1.46928 * 120.60919 * 184.85223 * 4 2 1 23 23 H 1.09002 * 109.46732 * 174.97754 * 1 2 3 24 24 H 1.09005 * 109.47267 * 294.96919 * 1 2 3 25 25 H 1.08991 * 109.47649 * 54.97460 * 1 2 3 26 26 H 1.09006 * 109.58343 * 113.82293 * 5 4 2 27 27 H 1.08996 * 109.58743 * 353.40162 * 5 4 2 28 28 H 1.09001 * 109.49745 * 185.41350 * 6 5 4 29 29 H 1.09000 * 109.52463 * 65.33524 * 6 5 4 30 30 H 1.09003 * 109.46197 * 301.35164 * 7 6 5 31 31 H 1.08998 * 109.46186 * 181.38303 * 7 6 5 32 32 H 0.96993 * 119.99908 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47158 * 183.14038 * 20 10 8 34 34 H 1.09003 * 109.47351 * 303.14269 * 20 10 8 35 35 H 1.00905 * 110.99869 * 56.05209 * 21 20 10 36 36 H 1.00894 * 110.99748 * 179.97438 * 21 20 10 37 37 H 1.08998 * 109.61479 * 6.61774 * 22 4 2 38 38 H 1.09004 * 109.55949 * 246.19262 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4643 -2.4454 -0.1053 6 6 1.8873 -3.3457 1.0596 7 6 3.4119 -3.4788 1.0689 8 6 4.0448 -2.0999 1.2696 9 1 3.6925 -1.6710 2.2077 10 6 5.5679 -2.2383 1.3114 11 1 5.8482 -2.9310 2.1051 12 6 6.0611 -2.7644 -0.0119 13 1 5.3584 -2.9790 -0.8034 14 6 7.4094 -2.9727 -0.2116 15 7 7.8397 -3.4323 -1.3663 16 14 8.6246 -2.6022 1.1577 17 1 9.0793 -1.1927 1.0481 18 1 7.9668 -2.8093 2.4728 19 1 9.7940 -3.5100 1.0407 20 6 6.1971 -0.8703 1.5828 21 7 5.7756 -0.3913 2.9061 22 6 3.6463 -1.1848 0.1075 23 1 -0.3633 -1.0238 -0.0900 24 1 -0.3634 0.4338 0.9316 25 1 -0.3634 0.5897 -0.8415 26 1 1.7154 -2.9280 -1.0499 27 1 0.3901 -2.2671 -0.0580 28 1 1.4368 -4.3311 0.9401 29 1 1.5548 -2.9054 1.9997 30 1 3.7457 -3.8967 0.1191 31 1 3.7139 -4.1388 1.8821 32 1 8.7881 -3.5785 -1.5070 33 1 7.2832 -0.9584 1.5573 34 1 5.8719 -0.1630 0.8199 35 1 6.0086 -1.0609 3.6241 36 1 6.1785 0.5111 3.1092 37 1 4.0116 -0.1752 0.2955 38 1 4.0753 -1.5640 -0.8200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -37.699072 kcal Electronic energy + Delta-G solvation = -18471.422238 eV Core-core repulsion = 15734.566226 eV Total energy + Delta-G solvation = -2736.856013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78381 -37.48673 -35.39397 -32.56102 -32.22721 -31.05440 -29.66612 -27.46281 -24.72198 -23.63393 -23.03956 -20.72885 -19.00036 -18.62110 -16.91785 -16.77121 -15.28180 -15.23823 -14.97358 -14.61500 -14.09249 -13.54995 -13.40294 -13.29824 -13.16672 -12.75205 -12.60224 -12.29416 -12.10091 -11.78605 -11.28887 -11.08117 -10.87044 -10.49630 -10.40008 -10.32023 -9.93908 -9.64760 -9.49122 -9.25254 -8.97400 -8.62470 -8.04790 -7.88335 -6.11642 -4.10539 2.98782 3.21100 3.29800 3.33562 3.47023 4.34944 4.84419 4.94899 5.14621 5.23595 5.30501 5.39639 5.50603 5.53785 5.67647 5.80831 5.82548 6.01394 6.11113 6.17656 6.26700 6.37592 6.51298 6.53442 6.69585 6.73602 6.86050 6.97016 7.09891 7.21803 7.46700 7.65474 7.84180 7.88758 8.03450 8.48619 8.56902 8.92626 9.50790 11.00757 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.007958 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.496586 B = 3517.719091 C = 3794.589726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.506 3.494 3 O -0.555 6.555 4 N -0.607 5.607 5 C 0.102 3.898 6 C -0.134 4.134 7 C -0.111 4.111 8 C -0.068 4.068 9 H 0.062 0.938 10 C 0.024 3.976 11 H 0.027 0.973 12 C -0.509 4.509 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.283 1.283 18 H -0.271 1.271 19 H -0.299 1.299 20 C 0.052 3.948 21 N -0.850 5.850 22 C 0.119 3.881 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.263 0.737 33 H 0.012 0.988 34 H 0.071 0.929 35 H 0.330 0.670 36 H 0.326 0.674 37 H 0.086 0.914 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 1.024 5.142 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.294 3.706 3 O -0.434 6.434 4 N -0.340 5.340 5 C -0.021 4.021 6 C -0.173 4.173 7 C -0.149 4.149 8 C -0.087 4.087 9 H 0.081 0.919 10 C 0.004 3.996 11 H 0.045 0.955 12 C -0.547 4.547 13 H 0.099 0.901 14 C -0.132 4.132 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.211 1.211 18 H -0.196 1.196 19 H -0.226 1.226 20 C -0.077 4.077 21 N -0.378 5.378 22 C -0.001 4.001 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.500 1.498 4.706 13.440 hybrid contribution 1.922 0.062 0.893 2.120 sum -10.577 1.560 5.598 12.069 Atomic orbital electron populations 1.22024 0.92999 1.04168 1.04685 1.20660 0.90220 0.83520 0.76201 1.90690 1.70660 1.31169 1.50883 1.48338 1.08683 1.05425 1.71539 1.21871 0.96373 0.84517 0.99324 1.21953 0.98469 0.98836 0.98011 1.21557 0.92279 0.97977 1.03058 1.21145 0.96689 0.93818 0.97049 0.91934 1.19159 0.91218 0.91412 0.97771 0.95541 1.21070 0.92887 1.42759 0.98002 0.90108 1.25052 0.98430 0.94628 0.95132 1.69886 1.14976 1.45589 1.23174 0.86821 0.80729 0.77093 0.83248 1.21087 1.19623 1.22643 1.22490 0.96080 0.99771 0.89380 1.58947 1.67345 1.06575 1.04917 1.21897 0.76480 1.01647 1.00117 0.90053 0.89224 0.89345 0.91307 0.89955 0.91496 0.92210 0.90578 0.92569 0.92692 0.97067 0.91104 0.85921 0.86343 0.89608 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 10.12 36.00 0.36 -1.61 16 2 C 0.51 8.48 7.80 -10.99 -0.09 8.40 16 3 O -0.56 -11.81 16.53 5.55 0.09 -11.72 16 4 N -0.61 -10.09 2.97 -172.76 -0.51 -10.61 16 5 C 0.10 1.32 6.36 -3.71 -0.02 1.29 16 6 C -0.13 -1.78 6.08 -26.62 -0.16 -1.94 16 7 C -0.11 -1.91 4.93 -26.69 -0.13 -2.04 16 8 C -0.07 -1.31 2.03 -90.50 -0.18 -1.50 16 9 H 0.06 1.23 7.61 -51.93 -0.40 0.84 16 10 C 0.02 0.54 1.33 -91.77 -0.12 0.42 16 11 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 12 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 13 H 0.08 2.25 5.93 -52.49 -0.31 1.94 16 14 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 15 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 16 Si 0.89 21.64 24.40 -169.99 -4.15 17.50 16 17 H -0.28 -6.88 6.84 56.52 0.39 -6.49 16 18 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 20 C 0.05 1.13 5.49 -3.82 -0.02 1.11 16 21 N -0.85 -15.40 8.95 -10.36 -0.09 -15.49 16 22 C 0.12 2.38 5.06 -3.71 -0.02 2.36 16 23 H 0.08 0.69 5.10 -51.93 -0.26 0.43 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.79 5.04 -51.93 -0.26 0.53 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.46 6.84 -51.93 -0.36 1.10 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.01 0.27 3.23 -51.93 -0.17 0.10 16 34 H 0.07 1.59 6.48 -51.93 -0.34 1.25 16 35 H 0.33 5.60 8.99 -39.29 -0.35 5.24 16 36 H 0.33 5.23 9.08 -39.29 -0.36 4.87 16 37 H 0.09 1.90 5.63 -51.93 -0.29 1.61 16 38 H 0.08 1.77 6.29 -51.93 -0.33 1.45 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -31.33 284.16 -5.86 -37.19 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.51 Total: 9.90 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.74 Total: -5.22 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.17 Total: -51.93 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.15 Total: 17.50 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.33 -5.86 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.509 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds