Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99832 * 2 1 4 4 N 1.34775 * 120.00686 * 179.97438 * 2 1 3 5 5 C 1.46934 * 120.62560 * 4.82714 * 4 2 1 6 6 C 1.53184 * 108.77504 * 233.60899 * 5 4 2 7 7 C 1.53040 * 109.31595 * 305.36539 * 6 5 4 8 8 C 1.53040 * 109.53656 * 61.36540 * 7 6 5 9 9 H 1.09000 * 109.49797 * 58.61839 * 8 7 6 10 10 C 1.53003 * 109.49818 * 178.68764 * 8 7 6 11 11 H 1.09002 * 109.46941 * 302.83797 * 10 8 7 12 12 C 1.50695 * 109.47200 * 62.84562 * 10 8 7 13 13 H 1.07994 * 119.99998 * 359.97438 * 12 10 8 14 14 C 1.37883 * 119.99584 * 180.02562 * 12 10 8 15 15 N 1.31515 * 119.99602 * 179.97438 * 14 12 10 16 16 Si 1.86788 * 120.00210 * 359.97438 * 14 12 10 17 17 H 1.48507 * 109.47250 * 270.00195 * 16 14 12 18 18 H 1.48500 * 109.47192 * 30.00272 * 16 14 12 19 19 H 1.48499 * 109.47391 * 150.00378 * 16 14 12 20 20 C 1.53003 * 109.47122 * 182.84508 * 10 8 7 21 21 N 1.46908 * 109.47023 * 63.13757 * 20 10 8 22 22 C 1.46928 * 120.60919 * 184.85223 * 4 2 1 23 23 H 1.09002 * 109.46732 * 174.97754 * 1 2 3 24 24 H 1.09005 * 109.47267 * 294.96919 * 1 2 3 25 25 H 1.08991 * 109.47649 * 54.97460 * 1 2 3 26 26 H 1.09006 * 109.58343 * 113.82293 * 5 4 2 27 27 H 1.08996 * 109.58743 * 353.40162 * 5 4 2 28 28 H 1.09001 * 109.49745 * 185.41350 * 6 5 4 29 29 H 1.09000 * 109.52463 * 65.33524 * 6 5 4 30 30 H 1.09003 * 109.46197 * 301.35164 * 7 6 5 31 31 H 1.08998 * 109.46186 * 181.38303 * 7 6 5 32 32 H 0.96993 * 119.99908 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47158 * 183.14038 * 20 10 8 34 34 H 1.09003 * 109.47351 * 303.14269 * 20 10 8 35 35 H 1.00905 * 110.99869 * 56.05209 * 21 20 10 36 36 H 1.00894 * 110.99748 * 179.97438 * 21 20 10 37 37 H 1.08998 * 109.61479 * 6.61774 * 22 4 2 38 38 H 1.09004 * 109.55949 * 246.19262 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4643 -2.4454 -0.1053 6 6 1.8873 -3.3457 1.0596 7 6 3.4119 -3.4788 1.0689 8 6 4.0448 -2.0999 1.2696 9 1 3.6925 -1.6710 2.2077 10 6 5.5679 -2.2383 1.3114 11 1 5.8482 -2.9310 2.1051 12 6 6.0611 -2.7644 -0.0119 13 1 5.3584 -2.9790 -0.8034 14 6 7.4094 -2.9727 -0.2116 15 7 7.8397 -3.4323 -1.3663 16 14 8.6246 -2.6022 1.1577 17 1 9.0793 -1.1927 1.0481 18 1 7.9668 -2.8093 2.4728 19 1 9.7940 -3.5100 1.0407 20 6 6.1971 -0.8703 1.5828 21 7 5.7756 -0.3913 2.9061 22 6 3.6463 -1.1848 0.1075 23 1 -0.3633 -1.0238 -0.0900 24 1 -0.3634 0.4338 0.9316 25 1 -0.3634 0.5897 -0.8415 26 1 1.7154 -2.9280 -1.0499 27 1 0.3901 -2.2671 -0.0580 28 1 1.4368 -4.3311 0.9401 29 1 1.5548 -2.9054 1.9997 30 1 3.7457 -3.8967 0.1191 31 1 3.7139 -4.1388 1.8821 32 1 8.7881 -3.5785 -1.5070 33 1 7.2832 -0.9584 1.5573 34 1 5.8719 -0.1630 0.8199 35 1 6.0086 -1.0609 3.6241 36 1 6.1785 0.5111 3.1092 37 1 4.0116 -0.1752 0.2955 38 1 4.0753 -1.5640 -0.8200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -62.106235 kcal Electronic energy + Delta-G solvation = -18472.480612 eV Core-core repulsion = 15734.566226 eV Total energy + Delta-G solvation = -2737.914387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15328 -39.02478 -36.93097 -34.36257 -33.89554 -32.42066 -30.91136 -29.04561 -26.13205 -25.51058 -24.48950 -22.11917 -20.70718 -20.07142 -18.65871 -18.10072 -17.02307 -16.66180 -16.42292 -16.15384 -15.44242 -15.24741 -15.12326 -14.78449 -14.67898 -14.12003 -14.00839 -13.57618 -13.52696 -12.95417 -12.91089 -12.65253 -12.57118 -12.22030 -11.83052 -11.79961 -11.68333 -11.35578 -11.11377 -10.86894 -10.68645 -10.61403 -9.49873 -9.46728 -8.27030 -6.28350 1.25470 1.29590 1.39261 1.70725 2.19947 2.30043 3.06637 3.73995 3.82383 3.93869 4.07937 4.15140 4.25987 4.33329 4.45288 4.59962 4.64364 4.68441 4.69529 4.81342 4.92147 4.97552 5.09790 5.11414 5.18278 5.25789 5.30552 5.37124 5.56267 5.64939 5.71816 5.83882 6.20129 6.38740 6.60915 6.62132 6.81544 7.26947 7.35498 8.88426 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.007958 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.496586 B = 3517.719091 C = 3794.589726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.494 3.506 3 O -0.611 6.611 4 N -0.610 5.610 5 C 0.096 3.904 6 C -0.125 4.125 7 C -0.111 4.111 8 C -0.058 4.058 9 H 0.068 0.932 10 C 0.024 3.976 11 H 0.027 0.973 12 C -0.496 4.496 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.946 3.054 17 H -0.282 1.282 18 H -0.248 1.248 19 H -0.303 1.303 20 C 0.061 3.939 21 N -0.843 5.843 22 C 0.131 3.869 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.000 1.000 34 H 0.053 0.947 35 H 0.341 0.659 36 H 0.342 0.658 37 H 0.057 0.943 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 0.801 7.220 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.285 3.715 3 O -0.494 6.494 4 N -0.342 5.342 5 C -0.025 4.025 6 C -0.163 4.163 7 C -0.149 4.149 8 C -0.078 4.078 9 H 0.086 0.914 10 C 0.004 3.996 11 H 0.045 0.955 12 C -0.534 4.534 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.775 3.225 17 H -0.209 1.209 18 H -0.172 1.172 19 H -0.231 1.231 20 C -0.070 4.070 21 N -0.372 5.372 22 C 0.008 3.992 23 H 0.131 0.869 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.075 0.925 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.021 1.257 6.814 16.542 hybrid contribution 2.629 0.140 0.192 2.640 sum -12.392 1.397 7.006 14.303 Atomic orbital electron populations 1.22038 0.87618 1.06649 1.06099 1.21830 0.92695 0.82395 0.74557 1.90663 1.72307 1.33116 1.53284 1.48453 1.07232 1.07315 1.71154 1.22207 0.98547 0.82576 0.99186 1.21911 0.94950 1.00780 0.98665 1.21517 0.95647 0.96148 1.01574 1.21031 0.94749 0.95207 0.96781 0.91397 1.19123 0.93490 0.91616 0.95337 0.95537 1.21296 0.92226 1.41062 0.98858 0.93171 1.25810 1.00473 0.95046 0.97212 1.70028 1.15241 1.48097 1.25444 0.85884 0.78425 0.76643 0.81523 1.20945 1.17236 1.23066 1.22198 0.95056 0.98831 0.90902 1.58791 1.67241 1.07644 1.03555 1.21423 0.79311 0.99754 0.98710 0.86906 0.87564 0.88070 0.91627 0.85307 0.88348 0.90972 0.93423 0.92216 0.92863 0.98234 0.92847 0.84629 0.84586 0.92452 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.12 71.24 0.72 -2.24 16 2 C 0.49 15.85 7.80 87.66 0.68 16.53 16 3 O -0.61 -26.21 16.53 -3.05 -0.05 -26.26 16 4 N -0.61 -19.60 2.97 -818.89 -2.43 -22.03 16 5 C 0.10 2.17 6.36 86.36 0.55 2.72 16 6 C -0.13 -2.87 6.08 30.67 0.19 -2.69 16 7 C -0.11 -3.71 4.93 30.62 0.15 -3.56 16 8 C -0.06 -2.25 2.03 -10.71 -0.02 -2.27 16 9 H 0.07 2.57 7.61 -2.39 -0.02 2.55 16 10 C 0.02 1.07 1.33 -11.54 -0.02 1.06 16 11 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 12 C -0.50 -26.77 7.65 25.60 0.20 -26.57 16 13 H 0.05 2.97 5.93 -2.91 -0.02 2.95 16 14 C 0.01 0.65 5.45 84.66 0.46 1.11 16 15 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 16 Si 0.95 45.06 24.40 68.60 1.67 46.73 16 17 H -0.28 -13.30 6.84 99.48 0.68 -12.62 16 18 H -0.25 -10.79 6.53 99.48 0.65 -10.14 16 19 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 20 C 0.06 2.59 5.49 86.30 0.47 3.07 16 21 N -0.84 -29.07 8.95 -186.70 -1.67 -30.74 16 22 C 0.13 5.36 5.06 86.36 0.44 5.79 16 23 H 0.11 1.25 5.10 -2.39 -0.01 1.24 16 24 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.13 1.74 5.04 -2.39 -0.01 1.73 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.85 6.84 -2.39 -0.02 1.84 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.00 0.00 3.23 -2.39 -0.01 -0.01 16 34 H 0.05 2.46 6.48 -2.39 -0.02 2.45 16 35 H 0.34 10.67 8.99 -89.69 -0.81 9.87 16 36 H 0.34 10.29 9.08 -89.70 -0.81 9.47 16 37 H 0.06 2.66 5.63 -2.39 -0.01 2.64 16 38 H 0.05 2.21 6.29 -2.38 -0.01 2.20 16 Total: -1.00 -72.40 284.16 1.02 -71.38 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.62 Total: 26.02 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 3.82 Total: -7.05 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -3.81 Total: -110.83 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -72.40 1.02 -71.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.274 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds