Wall clock time and date at job start Mon Mar 30 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47603 * 2 1 4 4 C 1.53006 * 109.47124 * 120.00216 * 2 1 3 5 5 H 1.09000 * 109.59095 * 304.90198 * 4 2 1 6 6 C 1.52980 * 109.59408 * 184.60024 * 4 2 1 7 7 N 1.46009 * 110.04051 * 189.77985 * 6 4 2 8 8 C 1.33711 * 122.92830 * 18.42017 * 7 6 4 9 9 O 1.21281 * 118.62527 * 178.05489 * 8 7 6 10 10 C 1.50265 * 122.74059 * 357.80028 * 8 7 6 11 11 N 1.46906 * 109.92499 * 17.65462 * 10 8 7 12 12 C 1.46899 * 111.00047 * 72.86966 * 11 10 8 13 13 H 1.09007 * 109.46740 * 279.34204 * 12 11 10 14 14 C 1.53000 * 109.47283 * 39.34315 * 12 11 10 15 15 C 1.50699 * 109.47018 * 159.34690 * 12 11 10 16 16 H 1.07993 * 120.00118 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99806 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99839 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00097 * 359.97438 * 17 15 12 20 20 H 1.48494 * 109.47146 * 90.00094 * 19 17 15 21 21 H 1.48500 * 109.46860 * 210.00102 * 19 17 15 22 22 H 1.48493 * 109.46979 * 329.99712 * 19 17 15 23 23 H 1.08995 * 109.47172 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46677 * 300.00161 * 1 2 3 25 25 H 1.08998 * 109.47016 * 59.99601 * 1 2 3 26 26 H 1.09001 * 109.47186 * 239.99720 * 2 1 3 27 27 H 1.08994 * 109.47703 * 185.43335 * 3 2 1 28 28 H 1.08997 * 109.46775 * 305.43203 * 3 2 1 29 29 H 1.09003 * 109.47336 * 65.42497 * 3 2 1 30 30 H 1.09001 * 109.37725 * 69.60779 * 6 4 2 31 31 H 1.08995 * 109.28240 * 309.89451 * 6 4 2 32 32 H 0.96999 * 118.53266 * 198.13886 * 7 6 4 33 33 H 1.09003 * 109.57892 * 257.41070 * 10 8 7 34 34 H 1.09004 * 109.16770 * 137.63524 * 10 8 7 35 35 H 1.08997 * 109.46920 * 52.53193 * 14 12 11 36 36 H 1.08997 * 109.47039 * 172.52942 * 14 12 11 37 37 H 1.09004 * 109.46775 * 292.52688 * 14 12 11 38 38 H 0.97006 * 119.99753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6079 -0.2622 2.1384 6 6 3.5655 -0.6236 1.3112 7 7 4.0805 -1.4969 2.3620 8 6 3.3702 -2.5017 2.8851 9 8 3.8879 -3.2010 3.7300 10 6 1.9554 -2.7972 2.4737 11 7 1.6593 -2.1420 1.1927 12 6 2.3374 -2.8250 0.0829 13 1 3.3771 -2.5007 0.0377 14 6 2.2842 -4.3376 0.3062 15 6 1.6481 -2.4839 -1.2131 16 1 0.7917 -1.8260 -1.2123 17 6 2.1108 -3.0118 -2.3997 18 7 1.5090 -2.7146 -3.5307 19 14 3.5926 -4.1494 -2.4011 20 1 3.1384 -5.5540 -2.2408 21 1 4.3232 -4.0089 -3.6863 22 1 4.4940 -3.7892 -1.2774 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 3.1257 1.4440 -0.0973 28 1 1.5996 1.9835 -0.8373 29 1 1.7584 1.9275 0.9346 30 1 3.8536 0.4060 1.5232 31 1 3.9848 -0.9263 0.3518 32 1 4.9794 -1.3436 2.6925 33 1 1.2689 -2.4285 3.2359 34 1 1.8316 -3.8748 2.3660 35 1 1.2529 -4.6426 0.4836 36 1 2.6675 -4.8489 -0.5768 37 1 2.8943 -4.5989 1.1709 38 1 1.8348 -3.0858 -4.3656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:17 Heat of formation + Delta-G solvation = -13.838265 kcal Electronic energy + Delta-G solvation = -19169.514362 eV Core-core repulsion = 16433.693032 eV Total energy + Delta-G solvation = -2735.821330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52190 -37.73466 -34.64609 -34.18111 -32.59457 -30.05529 -28.62684 -27.07513 -25.36301 -24.49978 -23.07452 -20.98798 -19.95471 -17.80359 -16.89206 -16.82456 -16.16518 -15.47906 -15.16228 -14.37561 -14.18094 -13.75988 -13.45052 -12.97501 -12.80124 -12.47175 -12.43140 -12.07480 -11.81578 -11.62695 -11.22671 -10.93053 -10.81142 -10.70361 -10.41001 -10.16102 -10.07265 -9.98672 -9.76231 -9.46520 -8.99920 -8.81233 -8.56436 -7.47013 -6.13964 -4.10092 2.91558 3.20538 3.32179 3.33412 3.53377 4.32652 4.49880 4.88857 5.12723 5.26130 5.33083 5.47279 5.64208 5.69142 5.85131 5.91410 5.93348 6.06528 6.18635 6.23484 6.32428 6.39805 6.43698 6.46134 6.56279 6.69500 6.79426 6.97012 7.05230 7.18975 7.38552 7.53616 7.55648 7.71633 7.84611 8.45000 8.56348 8.97368 9.47308 10.96577 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.013054 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.152048 B = 2144.421265 C = 2985.407145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.147 4.147 4 C 0.090 3.910 5 H 0.072 0.928 6 C 0.071 3.929 7 N -0.721 5.721 8 C 0.491 3.509 9 O -0.571 6.571 10 C 0.028 3.972 11 N -0.502 5.502 12 C 0.169 3.831 13 H 0.012 0.988 14 C -0.159 4.159 15 C -0.508 4.508 16 H 0.107 0.893 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.271 1.271 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.136 0.864 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.392 0.608 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.028 0.972 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 5.790 7.414 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 C -0.205 4.205 4 C -0.020 4.020 5 H 0.090 0.910 6 C -0.054 4.054 7 N -0.372 5.372 8 C 0.277 3.723 9 O -0.450 6.450 10 C -0.103 4.103 11 N -0.226 5.226 12 C 0.063 3.937 13 H 0.029 0.971 14 C -0.217 4.217 15 C -0.545 4.545 16 H 0.124 0.876 17 C -0.129 4.129 18 N -0.530 5.530 19 Si 0.707 3.293 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.197 1.197 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.153 0.847 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.226 0.774 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.074 5.322 7.469 9.234 hybrid contribution 2.187 -0.552 0.126 2.259 sum 3.261 4.771 7.595 9.543 Atomic orbital electron populations 1.21632 0.94943 1.02823 0.99089 1.21687 0.96731 0.93975 1.00245 1.21922 1.00366 0.97414 1.00779 1.21917 0.90247 0.90198 0.99614 0.90960 1.22322 0.98269 0.93625 0.91176 1.45632 1.18502 1.32684 1.40382 1.21611 0.90776 0.79176 0.80753 1.90681 1.71863 1.48485 1.33999 1.22642 0.90042 1.03541 0.94120 1.62651 1.57617 1.00996 1.01296 1.19985 0.93560 0.89721 0.90465 0.97070 1.22425 1.01252 0.99046 0.98937 1.21246 1.16138 1.29623 0.87517 0.87564 1.24913 0.96259 0.96020 0.95717 1.69856 1.40454 1.44626 0.98095 0.87054 0.83886 0.81814 0.76584 1.20584 1.22492 1.19652 0.90564 0.94978 0.93784 0.84685 0.93364 0.92747 0.93963 0.90732 0.90241 0.77383 0.88150 0.86561 0.91731 0.93365 0.95259 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.24 37.16 0.31 -1.83 16 2 C -0.11 -1.81 1.94 -90.62 -0.18 -1.98 16 3 C -0.15 -2.01 8.56 37.16 0.32 -1.69 16 4 C 0.09 1.45 1.80 -67.56 -0.12 1.33 16 5 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 6 C 0.07 1.08 4.96 -4.32 -0.02 1.06 16 7 N -0.72 -11.42 5.44 -61.06 -0.33 -11.75 16 8 C 0.49 8.91 7.13 -11.67 -0.08 8.83 16 9 O -0.57 -12.00 17.83 5.56 0.10 -11.90 16 10 C 0.03 0.47 5.39 -5.18 -0.03 0.45 16 11 N -0.50 -9.26 4.20 -221.56 -0.93 -10.19 16 12 C 0.17 3.64 1.19 -68.87 -0.08 3.56 16 13 H 0.01 0.27 4.47 -51.93 -0.23 0.03 16 14 C -0.16 -3.38 7.41 37.16 0.28 -3.10 16 15 C -0.51 -12.49 6.72 -34.44 -0.23 -12.72 16 16 H 0.11 2.73 4.40 -52.49 -0.23 2.50 16 17 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 18 N -0.89 -25.16 13.96 55.43 0.77 -24.39 16 19 Si 0.88 20.95 24.43 -169.99 -4.15 16.80 16 20 H -0.28 -6.64 6.81 56.52 0.39 -6.26 16 21 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 23 H 0.08 1.46 6.58 -51.93 -0.34 1.11 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.14 2.80 4.73 -51.93 -0.25 2.56 16 27 H 0.05 0.61 6.91 -51.93 -0.36 0.25 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.92 7.07 -51.93 -0.37 0.55 16 31 H 0.08 1.36 6.45 -51.93 -0.34 1.02 16 32 H 0.39 5.52 8.84 -40.82 -0.36 5.16 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.12 2.02 5.46 -51.93 -0.28 1.74 16 35 H 0.06 1.31 8.01 -51.93 -0.42 0.90 16 36 H 0.05 1.09 3.23 -51.93 -0.17 0.92 16 37 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -28.64 274.81 -5.74 -34.37 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.39 Total: 7.19 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.06 Total: -4.28 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.49 Total: -46.32 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.10 Total: -11.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.15 Total: 16.80 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.64 -5.74 -34.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.536 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds