Wall clock time and date at job start Mon Mar 30 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47603 * 2 1 4 4 C 1.53006 * 109.47124 * 120.00216 * 2 1 3 5 5 H 1.09000 * 109.59095 * 304.90198 * 4 2 1 6 6 C 1.52980 * 109.59408 * 184.60024 * 4 2 1 7 7 N 1.46009 * 110.04051 * 189.77985 * 6 4 2 8 8 C 1.33711 * 122.92830 * 18.42017 * 7 6 4 9 9 O 1.21281 * 118.62527 * 178.05489 * 8 7 6 10 10 C 1.50265 * 122.74059 * 357.80028 * 8 7 6 11 11 N 1.46906 * 109.92499 * 17.65462 * 10 8 7 12 12 C 1.46899 * 111.00047 * 72.86966 * 11 10 8 13 13 H 1.09007 * 109.46740 * 279.34204 * 12 11 10 14 14 C 1.53000 * 109.47283 * 39.34315 * 12 11 10 15 15 C 1.50699 * 109.47018 * 159.34690 * 12 11 10 16 16 H 1.07993 * 120.00118 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99806 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99839 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00097 * 359.97438 * 17 15 12 20 20 H 1.48494 * 109.47146 * 90.00094 * 19 17 15 21 21 H 1.48500 * 109.46860 * 210.00102 * 19 17 15 22 22 H 1.48493 * 109.46979 * 329.99712 * 19 17 15 23 23 H 1.08995 * 109.47172 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46677 * 300.00161 * 1 2 3 25 25 H 1.08998 * 109.47016 * 59.99601 * 1 2 3 26 26 H 1.09001 * 109.47186 * 239.99720 * 2 1 3 27 27 H 1.08994 * 109.47703 * 185.43335 * 3 2 1 28 28 H 1.08997 * 109.46775 * 305.43203 * 3 2 1 29 29 H 1.09003 * 109.47336 * 65.42497 * 3 2 1 30 30 H 1.09001 * 109.37725 * 69.60779 * 6 4 2 31 31 H 1.08995 * 109.28240 * 309.89451 * 6 4 2 32 32 H 0.96999 * 118.53266 * 198.13886 * 7 6 4 33 33 H 1.09003 * 109.57892 * 257.41070 * 10 8 7 34 34 H 1.09004 * 109.16770 * 137.63524 * 10 8 7 35 35 H 1.08997 * 109.46920 * 52.53193 * 14 12 11 36 36 H 1.08997 * 109.47039 * 172.52942 * 14 12 11 37 37 H 1.09004 * 109.46775 * 292.52688 * 14 12 11 38 38 H 0.97006 * 119.99753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6079 -0.2622 2.1384 6 6 3.5655 -0.6236 1.3112 7 7 4.0805 -1.4969 2.3620 8 6 3.3702 -2.5017 2.8851 9 8 3.8879 -3.2010 3.7300 10 6 1.9554 -2.7972 2.4737 11 7 1.6593 -2.1420 1.1927 12 6 2.3374 -2.8250 0.0829 13 1 3.3771 -2.5007 0.0377 14 6 2.2842 -4.3376 0.3062 15 6 1.6481 -2.4839 -1.2131 16 1 0.7917 -1.8260 -1.2123 17 6 2.1108 -3.0118 -2.3997 18 7 1.5090 -2.7146 -3.5307 19 14 3.5926 -4.1494 -2.4011 20 1 3.1384 -5.5540 -2.2408 21 1 4.3232 -4.0089 -3.6863 22 1 4.4940 -3.7892 -1.2774 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 3.1257 1.4440 -0.0973 28 1 1.5996 1.9835 -0.8373 29 1 1.7584 1.9275 0.9346 30 1 3.8536 0.4060 1.5232 31 1 3.9848 -0.9263 0.3518 32 1 4.9794 -1.3436 2.6925 33 1 1.2689 -2.4285 3.2359 34 1 1.8316 -3.8748 2.3660 35 1 1.2529 -4.6426 0.4836 36 1 2.6675 -4.8489 -0.5768 37 1 2.8943 -4.5989 1.1709 38 1 1.8348 -3.0858 -4.3656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:17 Heat of formation + Delta-G solvation = -35.928563 kcal Electronic energy + Delta-G solvation = -19170.472269 eV Core-core repulsion = 16433.693032 eV Total energy + Delta-G solvation = -2736.779238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.92965 -39.19758 -36.15971 -35.54230 -34.41416 -31.76947 -29.97256 -28.41840 -26.88391 -26.14003 -24.43010 -22.60966 -21.30397 -19.28263 -18.71818 -18.23886 -17.59776 -17.04961 -16.57370 -16.01519 -15.76030 -15.14707 -14.81633 -14.64027 -14.29157 -14.18990 -13.78524 -13.62283 -13.21117 -12.88284 -12.69986 -12.56511 -12.46864 -12.31156 -12.02572 -11.58544 -11.51227 -11.45546 -11.41921 -11.07163 -10.82198 -10.49274 -10.13361 -8.95796 -8.17532 -6.12829 1.28322 1.35927 1.40751 1.51635 2.24374 2.35017 3.07014 3.15594 3.56130 3.94601 4.04263 4.18885 4.36709 4.42099 4.49737 4.54164 4.63985 4.67100 4.71087 4.74024 4.89831 5.02358 5.04756 5.13657 5.25970 5.31462 5.36087 5.51665 5.68380 5.72850 5.78977 5.97257 6.07652 6.20127 6.36449 6.64715 6.97571 7.12521 7.46026 8.96018 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.013054 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.152048 B = 2144.421265 C = 2985.407145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.087 3.913 5 H 0.098 0.902 6 C 0.075 3.925 7 N -0.711 5.711 8 C 0.488 3.512 9 O -0.604 6.604 10 C 0.029 3.971 11 N -0.509 5.509 12 C 0.175 3.825 13 H 0.005 0.995 14 C -0.157 4.157 15 C -0.485 4.485 16 H 0.091 0.909 17 C 0.025 3.975 18 N -0.938 5.938 19 Si 0.921 3.079 20 H -0.278 1.278 21 H -0.304 1.304 22 H -0.264 1.264 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.402 0.598 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 6.943 9.425 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.021 4.021 5 H 0.116 0.884 6 C -0.050 4.050 7 N -0.362 5.362 8 C 0.275 3.725 9 O -0.485 6.485 10 C -0.102 4.102 11 N -0.232 5.232 12 C 0.067 3.933 13 H 0.023 0.977 14 C -0.215 4.215 15 C -0.523 4.523 16 H 0.108 0.892 17 C -0.173 4.173 18 N -0.580 5.580 19 Si 0.751 3.249 20 H -0.205 1.205 21 H -0.232 1.232 22 H -0.189 1.189 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.612 6.496 9.493 11.615 hybrid contribution 1.966 -0.823 -0.447 2.177 sum 3.578 5.672 9.046 11.261 Atomic orbital electron populations 1.21541 0.95146 1.01161 1.00012 1.21484 0.96530 0.95771 0.98562 1.21851 1.00891 0.95063 1.02059 1.22031 0.91202 0.88726 1.00178 0.88444 1.22329 0.97258 0.95347 0.90025 1.45585 1.18872 1.31966 1.39789 1.21756 0.91145 0.79199 0.80441 1.90675 1.72540 1.49704 1.35613 1.22704 0.90247 1.03383 0.93818 1.62550 1.57402 1.02198 1.01060 1.19760 0.92911 0.90279 0.90328 0.97734 1.22367 1.01809 0.98506 0.98768 1.21507 1.14794 1.27335 0.88704 0.89159 1.25444 0.98359 0.97717 0.95753 1.69967 1.42458 1.46908 0.98619 0.86314 0.81810 0.80528 0.76231 1.20506 1.23211 1.18904 0.93465 0.92310 0.94533 0.89173 0.92372 0.93037 0.91418 0.86930 0.92326 0.76216 0.85384 0.87001 0.91226 0.94853 0.93879 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.24 71.98 0.59 -3.31 16 2 C -0.10 -3.32 1.94 -10.79 -0.02 -3.34 16 3 C -0.14 -3.41 8.56 71.98 0.62 -2.80 16 4 C 0.09 2.56 1.80 44.86 0.08 2.64 16 5 H 0.10 2.45 8.08 -2.39 -0.02 2.43 16 6 C 0.08 2.03 4.96 86.47 0.43 2.46 16 7 N -0.71 -20.33 5.44 -466.10 -2.54 -22.87 16 8 C 0.49 16.41 7.13 87.69 0.63 17.03 16 9 O -0.60 -24.08 17.83 -3.03 -0.05 -24.14 16 10 C 0.03 0.92 5.39 85.42 0.46 1.38 16 11 N -0.51 -17.72 4.20 -854.89 -3.59 -21.31 16 12 C 0.17 7.33 1.19 44.17 0.05 7.38 16 13 H 0.01 0.23 4.47 -2.38 -0.01 0.22 16 14 C -0.16 -6.48 7.41 71.98 0.53 -5.94 16 15 C -0.49 -24.08 6.72 25.60 0.17 -23.91 16 16 H 0.09 4.74 4.40 -2.91 -0.01 4.73 16 17 C 0.02 1.33 5.45 84.65 0.46 1.79 16 18 N -0.94 -54.48 13.96 21.45 0.30 -54.18 16 19 Si 0.92 43.56 24.43 68.60 1.68 45.24 16 20 H -0.28 -12.99 6.81 99.48 0.68 -12.32 16 21 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 22 H -0.26 -12.02 6.53 99.48 0.65 -11.37 16 23 H 0.05 1.78 6.58 -2.39 -0.02 1.77 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 3.74 4.73 -2.39 -0.01 3.73 16 27 H 0.06 1.29 6.91 -2.39 -0.02 1.27 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 2.23 7.07 -2.39 -0.02 2.21 16 31 H 0.06 1.88 6.45 -2.39 -0.02 1.86 16 32 H 0.40 10.08 8.84 -92.71 -0.82 9.26 16 33 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.11 3.64 5.46 -2.38 -0.01 3.63 16 35 H 0.07 2.75 8.01 -2.39 -0.02 2.73 16 36 H 0.03 1.47 3.23 -2.39 -0.01 1.46 16 37 H 0.04 1.64 6.46 -2.39 -0.02 1.62 16 38 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -62.07 274.81 -0.03 -62.11 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.17 Total: 21.77 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.00 Total: -6.61 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -5.83 Total: -98.37 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.24 kcal Total: -62.07 -0.03 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.177 kcal (2) G-P(sol) polarization free energy of solvation -62.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds