Wall clock time and date at job start Mon Mar 30 2020 03:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 C 1.53008 * 109.46701 * 119.99284 * 2 1 3 5 5 H 1.08993 * 109.71979 * 289.79749 * 4 2 1 6 6 C 1.52987 * 109.58959 * 169.41512 * 4 2 1 7 7 N 1.46006 * 110.04127 * 189.93538 * 6 4 2 8 8 C 1.33719 * 122.92395 * 18.42056 * 7 6 4 9 9 O 1.21289 * 118.62057 * 178.05531 * 8 7 6 10 10 C 1.50266 * 122.74505 * 357.80526 * 8 7 6 11 11 N 1.46901 * 109.92149 * 17.65024 * 10 8 7 12 12 C 1.46902 * 111.00394 * 72.86924 * 11 10 8 13 13 H 1.08997 * 109.46910 * 275.05108 * 12 11 10 14 14 C 1.53002 * 109.47184 * 155.04522 * 12 11 10 15 15 C 1.50704 * 109.46704 * 35.05253 * 12 11 10 16 16 H 1.07997 * 120.00092 * 6.02913 * 15 12 11 17 17 C 1.37875 * 119.99759 * 186.03832 * 15 12 11 18 18 N 1.31516 * 120.00062 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00064 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46963 * 59.99227 * 19 17 15 21 21 H 1.48500 * 109.47217 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46795 * 299.99666 * 19 17 15 23 23 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47776 * 300.00282 * 1 2 3 25 25 H 1.09001 * 109.46849 * 60.00577 * 1 2 3 26 26 H 1.08991 * 109.47687 * 239.99219 * 2 1 3 27 27 H 1.08997 * 109.47339 * 185.36436 * 3 2 1 28 28 H 1.09005 * 109.46863 * 305.36483 * 3 2 1 29 29 H 1.08999 * 109.47361 * 65.36095 * 3 2 1 30 30 H 1.09002 * 109.37533 * 69.76481 * 6 4 2 31 31 H 1.08996 * 109.28274 * 310.05329 * 6 4 2 32 32 H 0.97000 * 118.53705 * 198.14404 * 7 6 4 33 33 H 1.08992 * 109.57369 * 257.41227 * 10 8 7 34 34 H 1.08999 * 109.17192 * 137.63374 * 10 8 7 35 35 H 1.08995 * 109.47612 * 312.59223 * 14 12 11 36 36 H 1.09006 * 109.46835 * 72.58946 * 14 12 11 37 37 H 1.08997 * 109.47066 * 192.57924 * 14 12 11 38 38 H 0.96996 * 120.00043 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.8348 -0.1163 2.1326 6 6 3.5467 -0.9562 1.1270 7 7 4.0028 -1.8438 2.1927 8 6 3.1742 -2.6285 2.8896 9 8 3.6420 -3.3623 3.7345 10 6 1.6872 -2.6352 2.6734 11 7 1.3672 -2.0242 1.3764 12 6 1.7347 -2.9165 0.2689 13 1 2.7874 -2.7763 0.0234 14 6 0.8774 -2.5896 -0.9555 15 6 1.5005 -4.3479 0.6783 16 1 1.0269 -4.5686 1.6234 17 6 1.8911 -5.3755 -0.1538 18 7 2.4676 -5.1067 -1.3049 19 14 1.6015 -7.1498 0.3540 20 1 0.1471 -7.3780 0.5478 21 1 2.1075 -8.0572 -0.7071 22 1 2.3194 -7.4244 1.6246 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8898 27 1 3.1257 1.4440 -0.0961 28 1 1.6003 1.9833 -0.8381 29 1 1.7572 1.9279 0.9341 30 1 4.0688 -0.0023 1.2026 31 1 3.7626 -1.4110 0.1603 32 1 4.9497 -1.8682 2.4019 33 1 1.2000 -2.0716 3.4689 34 1 1.3281 -3.6643 2.6868 35 1 -0.1678 -2.5110 -0.6568 36 1 1.2045 -1.6430 -1.3858 37 1 0.9851 -3.3818 -1.6964 38 1 2.7420 -5.8297 -1.8904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:22 Heat of formation + Delta-G solvation = -10.589644 kcal Electronic energy + Delta-G solvation = -19075.558932 eV Core-core repulsion = 16339.878473 eV Total energy + Delta-G solvation = -2735.680460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26043 -37.58789 -34.41376 -34.14758 -32.34239 -29.66626 -28.51283 -26.98710 -25.04083 -24.51659 -23.01217 -20.73316 -20.04355 -18.32272 -16.63724 -16.50622 -15.51762 -14.97476 -14.92796 -14.56527 -14.05748 -13.91235 -13.15330 -12.96793 -12.55243 -12.43650 -12.25905 -11.89560 -11.72983 -11.38337 -11.06108 -10.95358 -10.76272 -10.65396 -10.41510 -10.24573 -9.98361 -9.80771 -9.56377 -9.51300 -8.74534 -8.52862 -8.42665 -7.25993 -6.08578 -4.13691 3.32090 3.33714 3.35620 3.40922 3.82378 4.38741 4.69997 4.97174 5.25529 5.32228 5.37935 5.44568 5.60295 5.60597 5.77468 5.94552 6.01155 6.14911 6.18042 6.22547 6.27164 6.38584 6.50908 6.60967 6.80026 6.96014 7.10267 7.19273 7.26239 7.36350 7.58463 7.76335 7.88270 7.97127 8.18103 8.45131 8.83137 8.92821 9.52787 10.98711 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.010570 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.980252 B = 2648.247585 C = 3349.101139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.147 4.147 4 C 0.075 3.925 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.723 5.723 8 C 0.506 3.494 9 O -0.571 6.571 10 C 0.036 3.964 11 N -0.517 5.517 12 C 0.199 3.801 13 H 0.021 0.979 14 C -0.136 4.136 15 C -0.524 4.524 16 H 0.068 0.932 17 C 0.067 3.933 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 11.247 1.246 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.035 4.035 5 H 0.093 0.907 6 C -0.048 4.048 7 N -0.374 5.374 8 C 0.293 3.707 9 O -0.450 6.450 10 C -0.094 4.094 11 N -0.241 5.241 12 C 0.094 3.906 13 H 0.039 0.961 14 C -0.193 4.193 15 C -0.562 4.562 16 H 0.086 0.914 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.347 10.839 1.439 11.017 hybrid contribution 1.323 -1.060 0.175 1.704 sum -0.025 9.780 1.614 9.912 Atomic orbital electron populations 1.21977 0.94271 1.04398 0.99544 1.21388 0.97272 0.94455 0.97999 1.21910 1.00518 0.96701 1.01393 1.22025 0.89455 0.93290 0.98694 0.90720 1.22137 0.97969 0.93174 0.91472 1.45487 1.10702 1.43619 1.37602 1.21448 0.91854 0.77811 0.79593 1.90653 1.78176 1.40503 1.35633 1.22606 0.88532 1.05449 0.92840 1.62779 1.55750 1.02748 1.02809 1.19462 0.94615 0.89997 0.86568 0.96139 1.22237 0.98569 0.99222 0.99313 1.21313 1.40109 0.90157 1.04613 0.91419 1.24885 0.94750 0.99127 0.94842 1.69912 1.40340 1.32350 1.09963 0.86662 0.78717 0.84446 0.78371 1.20055 1.21309 1.20069 0.89107 0.93892 0.94247 0.89182 0.93138 0.92780 0.93086 0.91531 0.90781 0.77660 0.89683 0.84514 0.94188 0.95317 0.91125 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.17 37.16 0.30 -1.77 16 2 C -0.09 -1.32 1.81 -90.62 -0.16 -1.48 16 3 C -0.15 -1.67 8.94 37.16 0.33 -1.33 16 4 C 0.08 1.20 1.83 -67.56 -0.12 1.07 16 5 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 6 C 0.08 1.24 5.43 -4.32 -0.02 1.22 16 7 N -0.72 -13.02 5.49 -61.06 -0.34 -13.36 16 8 C 0.51 10.71 7.35 -11.67 -0.09 10.62 16 9 O -0.57 -13.97 17.83 5.55 0.10 -13.87 16 10 C 0.04 0.72 5.48 -5.19 -0.03 0.70 16 11 N -0.52 -9.99 3.80 -221.56 -0.84 -10.84 16 12 C 0.20 4.56 1.47 -68.86 -0.10 4.45 16 13 H 0.02 0.53 5.34 -51.93 -0.28 0.25 16 14 C -0.14 -2.96 7.56 37.16 0.28 -2.68 16 15 C -0.52 -13.69 7.63 -34.44 -0.26 -13.95 16 16 H 0.07 1.77 5.25 -52.49 -0.28 1.49 16 17 C 0.07 1.80 5.24 -17.82 -0.09 1.71 16 18 N -0.89 -24.65 11.80 55.43 0.65 -24.00 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.09 1.53 4.29 -51.92 -0.22 1.30 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.45 5.08 -51.93 -0.26 1.18 16 27 H 0.05 0.53 7.25 -51.93 -0.38 0.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.07 0.84 7.35 -51.93 -0.38 0.46 16 31 H 0.07 1.32 6.27 -51.93 -0.33 0.99 16 32 H 0.39 6.40 8.84 -40.82 -0.36 6.04 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.14 3.04 4.87 -51.93 -0.25 2.79 16 35 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 36 H 0.03 0.55 4.26 -51.93 -0.22 0.33 16 37 H 0.07 1.76 6.38 -51.93 -0.33 1.43 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -29.48 279.19 -6.48 -35.97 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.28 Total: 6.92 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.52 Total: -48.19 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.10 Total: -13.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.48 -6.48 -35.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.379 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds