Wall clock time and date at job start Mon Mar 30 2020 03:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 C 1.53008 * 109.46701 * 119.99284 * 2 1 3 5 5 H 1.08993 * 109.71979 * 289.79749 * 4 2 1 6 6 C 1.52987 * 109.58959 * 169.41512 * 4 2 1 7 7 N 1.46006 * 110.04127 * 189.93538 * 6 4 2 8 8 C 1.33719 * 122.92395 * 18.42056 * 7 6 4 9 9 O 1.21289 * 118.62057 * 178.05531 * 8 7 6 10 10 C 1.50266 * 122.74505 * 357.80526 * 8 7 6 11 11 N 1.46901 * 109.92149 * 17.65024 * 10 8 7 12 12 C 1.46902 * 111.00394 * 72.86924 * 11 10 8 13 13 H 1.08997 * 109.46910 * 275.05108 * 12 11 10 14 14 C 1.53002 * 109.47184 * 155.04522 * 12 11 10 15 15 C 1.50704 * 109.46704 * 35.05253 * 12 11 10 16 16 H 1.07997 * 120.00092 * 6.02913 * 15 12 11 17 17 C 1.37875 * 119.99759 * 186.03832 * 15 12 11 18 18 N 1.31516 * 120.00062 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00064 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46963 * 59.99227 * 19 17 15 21 21 H 1.48500 * 109.47217 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46795 * 299.99666 * 19 17 15 23 23 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47776 * 300.00282 * 1 2 3 25 25 H 1.09001 * 109.46849 * 60.00577 * 1 2 3 26 26 H 1.08991 * 109.47687 * 239.99219 * 2 1 3 27 27 H 1.08997 * 109.47339 * 185.36436 * 3 2 1 28 28 H 1.09005 * 109.46863 * 305.36483 * 3 2 1 29 29 H 1.08999 * 109.47361 * 65.36095 * 3 2 1 30 30 H 1.09002 * 109.37533 * 69.76481 * 6 4 2 31 31 H 1.08996 * 109.28274 * 310.05329 * 6 4 2 32 32 H 0.97000 * 118.53705 * 198.14404 * 7 6 4 33 33 H 1.08992 * 109.57369 * 257.41227 * 10 8 7 34 34 H 1.08999 * 109.17192 * 137.63374 * 10 8 7 35 35 H 1.08995 * 109.47612 * 312.59223 * 14 12 11 36 36 H 1.09006 * 109.46835 * 72.58946 * 14 12 11 37 37 H 1.08997 * 109.47066 * 192.57924 * 14 12 11 38 38 H 0.96996 * 120.00043 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.8348 -0.1163 2.1326 6 6 3.5467 -0.9562 1.1270 7 7 4.0028 -1.8438 2.1927 8 6 3.1742 -2.6285 2.8896 9 8 3.6420 -3.3623 3.7345 10 6 1.6872 -2.6352 2.6734 11 7 1.3672 -2.0242 1.3764 12 6 1.7347 -2.9165 0.2689 13 1 2.7874 -2.7763 0.0234 14 6 0.8774 -2.5896 -0.9555 15 6 1.5005 -4.3479 0.6783 16 1 1.0269 -4.5686 1.6234 17 6 1.8911 -5.3755 -0.1538 18 7 2.4676 -5.1067 -1.3049 19 14 1.6015 -7.1498 0.3540 20 1 0.1471 -7.3780 0.5478 21 1 2.1075 -8.0572 -0.7071 22 1 2.3194 -7.4244 1.6246 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8898 27 1 3.1257 1.4440 -0.0961 28 1 1.6003 1.9833 -0.8381 29 1 1.7572 1.9279 0.9341 30 1 4.0688 -0.0023 1.2026 31 1 3.7626 -1.4110 0.1603 32 1 4.9497 -1.8682 2.4019 33 1 1.2000 -2.0716 3.4689 34 1 1.3281 -3.6643 2.6868 35 1 -0.1678 -2.5110 -0.6568 36 1 1.2045 -1.6430 -1.3858 37 1 0.9851 -3.3818 -1.6964 38 1 2.7420 -5.8297 -1.8904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:22 Heat of formation + Delta-G solvation = -32.088372 kcal Electronic energy + Delta-G solvation = -19076.491187 eV Core-core repulsion = 16339.878473 eV Total energy + Delta-G solvation = -2736.612714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79508 -39.17353 -36.03078 -35.57324 -34.15260 -31.42898 -29.91696 -28.25515 -26.73277 -26.10081 -24.44492 -22.42701 -21.33973 -19.90262 -18.30044 -18.19678 -17.18146 -16.74957 -16.43493 -16.13285 -15.70959 -15.28040 -14.67679 -14.44303 -14.07916 -13.83271 -13.69404 -13.42877 -12.96762 -12.90327 -12.73035 -12.62117 -12.35963 -12.26123 -11.93425 -11.75581 -11.53871 -11.40037 -11.21279 -10.99669 -10.57649 -10.40549 -10.04798 -8.86820 -8.14732 -6.22884 1.37470 1.39663 1.45364 1.67137 2.34955 2.41396 3.17269 3.24725 3.64642 3.97570 4.10519 4.21441 4.37799 4.47805 4.57523 4.65824 4.77626 4.87828 4.92457 5.01503 5.04578 5.22818 5.24577 5.26902 5.36349 5.43799 5.55069 5.62905 5.70681 5.81591 5.86083 5.99288 6.20068 6.30060 6.32332 6.69733 6.93038 7.24782 7.45823 8.91334 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.010570 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.980252 B = 2648.247585 C = 3349.101139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.072 3.928 5 H 0.097 0.903 6 C 0.079 3.921 7 N -0.714 5.714 8 C 0.498 3.502 9 O -0.613 6.613 10 C 0.037 3.963 11 N -0.513 5.513 12 C 0.208 3.792 13 H -0.004 1.004 14 C -0.123 4.123 15 C -0.534 4.534 16 H 0.063 0.937 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.939 3.061 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 13.460 1.517 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.198 4.198 4 C -0.037 4.037 5 H 0.115 0.885 6 C -0.046 4.046 7 N -0.364 5.364 8 C 0.286 3.714 9 O -0.495 6.495 10 C -0.093 4.093 11 N -0.237 5.237 12 C 0.102 3.898 13 H 0.014 0.986 14 C -0.180 4.180 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.211 1.211 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.232 0.768 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.643 13.087 1.687 13.297 hybrid contribution 1.420 -1.671 0.103 2.195 sum -0.223 11.416 1.791 11.558 Atomic orbital electron populations 1.21907 0.94202 1.02913 1.00885 1.21322 0.97251 0.96178 0.95931 1.21850 1.01133 0.94211 1.02654 1.22254 0.89215 0.91610 1.00628 0.88532 1.22280 0.98481 0.94271 0.89573 1.45487 1.10965 1.42908 1.37084 1.21706 0.92644 0.77668 0.79411 1.90627 1.78883 1.42362 1.37663 1.22556 0.88096 1.04604 0.94077 1.62740 1.56180 1.03382 1.01350 1.19195 0.93308 0.89276 0.88023 0.98607 1.22079 0.98707 0.99225 0.98022 1.21740 1.39067 0.92161 1.04206 0.91879 1.25512 0.95164 1.02133 0.95112 1.70013 1.41504 1.32864 1.10665 0.85900 0.78839 0.81251 0.77438 1.19121 1.20943 1.21135 0.91885 0.92673 0.92855 0.91327 0.92168 0.91699 0.91727 0.87145 0.92869 0.76763 0.86580 0.87228 0.93793 0.92762 0.94609 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.17 71.98 0.59 -3.07 16 2 C -0.09 -2.24 1.81 -10.79 -0.02 -2.26 16 3 C -0.14 -2.56 8.94 71.98 0.64 -1.91 16 4 C 0.07 2.09 1.83 44.86 0.08 2.17 16 5 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 6 C 0.08 2.30 5.43 86.47 0.47 2.77 16 7 N -0.71 -24.73 5.49 -466.07 -2.56 -27.29 16 8 C 0.50 20.82 7.35 87.69 0.64 21.47 16 9 O -0.61 -30.19 17.83 -3.06 -0.05 -30.25 16 10 C 0.04 1.47 5.48 85.42 0.47 1.93 16 11 N -0.51 -19.21 3.80 -854.89 -3.25 -22.46 16 12 C 0.21 9.57 1.47 44.17 0.07 9.63 16 13 H 0.00 -0.18 5.34 -2.39 -0.01 -0.19 16 14 C -0.12 -5.36 7.56 71.98 0.54 -4.82 16 15 C -0.53 -28.32 7.63 25.60 0.20 -28.13 16 16 H 0.06 3.37 5.25 -2.91 -0.02 3.35 16 17 C 0.02 1.13 5.24 84.65 0.44 1.57 16 18 N -0.91 -51.66 11.80 21.45 0.25 -51.41 16 19 Si 0.94 44.72 29.54 68.60 2.03 46.75 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H 0.06 2.00 4.29 -2.38 -0.01 1.99 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 2.06 5.08 -2.39 -0.01 2.05 16 27 H 0.06 0.99 7.25 -2.39 -0.02 0.97 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 30 H 0.11 2.31 7.35 -2.39 -0.02 2.29 16 31 H 0.05 1.83 6.27 -2.39 -0.01 1.82 16 32 H 0.40 12.52 8.84 -92.71 -0.82 11.70 16 33 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.11 4.94 4.87 -2.39 -0.01 4.93 16 35 H 0.04 1.85 6.31 -2.39 -0.02 1.83 16 36 H 0.05 2.06 4.26 -2.38 -0.01 2.05 16 37 H 0.03 1.80 6.38 -2.39 -0.02 1.78 16 38 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -64.63 279.19 0.81 -63.82 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.26 Total: 21.49 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 4.12 Total: -0.66 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -5.55 Total: -101.16 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.63 0.81 -63.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.736 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds