Wall clock time and date at job start Mon Mar 30 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47193 * 2 1 4 4 C 1.45637 * 117.70677 * 89.99762 * 3 2 1 5 5 C 1.52995 * 110.77613 * 201.87864 * 4 3 2 6 6 H 1.08992 * 109.75490 * 72.96825 * 5 4 3 7 7 C 1.52999 * 109.72248 * 193.60295 * 5 4 3 8 8 C 1.52997 * 109.46826 * 293.89880 * 7 5 4 9 9 C 1.53007 * 109.47221 * 53.89720 * 7 5 4 10 10 N 1.47269 * 108.18455 * 313.27721 * 5 4 3 11 11 C 1.36939 * 121.35155 * 241.48199 * 10 5 4 12 12 H 1.07999 * 119.99922 * 320.70086 * 11 10 5 13 13 C 1.38810 * 120.00153 * 140.71098 * 11 10 5 14 14 N 1.31615 * 120.00339 * 161.55019 * 13 11 10 15 15 Si 1.86811 * 119.99829 * 341.54511 * 13 11 10 16 16 H 1.48494 * 109.46985 * 91.46677 * 15 13 11 17 17 H 1.48499 * 109.47078 * 211.46609 * 15 13 11 18 18 H 1.48500 * 109.47027 * 331.46915 * 15 13 11 19 19 C 1.47045 * 117.29513 * 61.49816 * 10 5 4 20 20 C 1.33621 * 117.63778 * 269.92799 * 3 2 1 21 21 O 1.21281 * 118.66160 * 355.69180 * 20 3 2 22 22 H 1.09006 * 109.47179 * 300.00162 * 1 2 3 23 23 H 1.08995 * 109.47160 * 60.00244 * 1 2 3 24 24 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99477 * 2 1 3 26 26 H 1.09004 * 109.46988 * 119.99569 * 2 1 3 27 27 H 1.08999 * 109.21978 * 81.54950 * 4 3 2 28 28 H 1.08998 * 109.22086 * 322.21198 * 4 3 2 29 29 H 1.09000 * 109.46802 * 173.89631 * 7 5 4 30 30 H 1.08996 * 109.47174 * 305.44575 * 8 7 5 31 31 H 1.08998 * 109.47465 * 65.45025 * 8 7 5 32 32 H 1.09009 * 109.46877 * 185.44823 * 8 7 5 33 33 H 1.09000 * 109.46858 * 52.46201 * 9 7 5 34 34 H 1.09000 * 109.47031 * 172.46657 * 9 7 5 35 35 H 1.09001 * 109.46785 * 292.46795 * 9 7 5 36 36 H 0.97005 * 120.00010 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.56790 * 77.08739 * 19 10 5 38 38 H 1.09006 * 109.57259 * 197.32089 * 19 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0197 1.2894 5 6 2.2173 3.5433 1.1526 6 1 1.1931 3.8811 0.9949 7 6 2.7832 4.1855 2.4208 8 6 1.8511 3.8952 3.5989 9 6 4.1687 3.6052 2.7118 10 7 3.0472 3.9154 -0.0056 11 6 4.1578 4.7036 0.1375 12 1 4.1434 5.5374 0.8237 13 6 5.3020 4.4311 -0.5996 14 7 6.2237 5.3583 -0.7511 15 14 5.5338 2.7480 -1.3765 16 1 4.9856 2.7602 -2.7565 17 1 6.9811 2.4187 -1.4217 18 1 4.8188 1.7274 -0.5688 19 6 2.6347 3.4064 -1.3221 20 6 2.2264 1.9651 -1.1837 21 8 2.0795 1.3061 -2.1912 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.2148 1.7113 1.6774 28 1 1.4650 1.7083 1.9852 29 1 2.8633 5.2630 2.2777 30 1 0.8411 4.2223 3.3521 31 1 1.8466 2.8247 3.8035 32 1 2.2017 4.4322 4.4804 33 1 4.7932 3.6927 1.8227 34 1 4.6275 4.1548 3.5337 35 1 4.0723 2.5547 2.9861 36 1 7.0235 5.1677 -1.2659 37 1 1.7920 3.9907 -1.6917 38 1 3.4675 3.4844 -2.0211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:09 Heat of formation + Delta-G solvation = -7.599581 kcal Electronic energy + Delta-G solvation = -19096.295456 eV Core-core repulsion = 16360.744656 eV Total energy + Delta-G solvation = -2735.550801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03522 -37.42564 -35.19381 -33.79247 -31.93653 -30.40714 -28.14688 -27.13581 -26.09187 -24.33088 -22.96150 -21.73397 -19.48119 -18.05732 -17.01839 -16.51248 -15.79300 -15.39125 -14.65591 -14.35966 -14.13668 -13.64293 -13.27651 -13.16067 -12.82522 -12.61601 -12.36520 -12.19073 -11.88698 -11.79381 -11.47384 -11.35056 -11.01637 -10.82594 -10.74792 -10.39449 -10.13413 -10.05951 -9.91753 -9.58500 -9.30254 -8.56259 -8.23819 -6.93546 -6.09322 -3.55828 3.16700 3.31421 3.42711 3.48437 3.52426 4.42246 4.67832 5.02243 5.14779 5.32636 5.36387 5.38229 5.52054 5.52662 5.61351 5.72605 5.82159 5.85951 5.95968 6.08783 6.10338 6.19966 6.27604 6.30928 6.32989 6.36643 6.42509 6.68072 6.76346 6.84358 7.03346 7.46628 7.81831 7.96278 8.24672 8.62110 8.81638 9.53856 9.95803 11.03865 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.013972 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.478295 B = 2003.563815 C = 2989.051096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.094 3.906 5 C 0.165 3.835 6 H 0.045 0.955 7 C -0.076 4.076 8 C -0.147 4.147 9 C -0.160 4.160 10 N -0.602 5.602 11 C -0.258 4.258 12 H 0.091 0.909 13 C 0.040 3.960 14 N -0.895 5.895 15 Si 0.863 3.137 16 H -0.280 1.280 17 H -0.298 1.298 18 H -0.264 1.264 19 C 0.115 3.885 20 C 0.508 3.492 21 O -0.571 6.571 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -6.484 7.032 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C -0.030 4.030 5 C 0.058 3.942 6 H 0.063 0.937 7 C -0.095 4.095 8 C -0.205 4.205 9 C -0.216 4.216 10 N -0.329 5.329 11 C -0.386 4.386 12 H 0.109 0.891 13 C -0.162 4.162 14 N -0.536 5.536 15 Si 0.693 3.307 16 H -0.208 1.208 17 H -0.226 1.226 18 H -0.189 1.189 19 C -0.012 4.012 20 C 0.296 3.704 21 O -0.450 6.450 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.848 -6.719 6.454 12.849 hybrid contribution 0.255 -1.060 -0.423 1.169 sum -8.594 -7.779 6.031 13.067 Atomic orbital electron populations 1.22072 0.96172 1.01607 1.02139 1.21425 0.94201 0.84116 1.02779 1.47289 1.65320 1.13772 1.06608 1.22266 1.00969 0.96402 0.83410 1.20959 0.94364 0.89921 0.88940 0.93726 1.20947 0.95355 1.01240 0.91979 1.21916 0.99220 1.00964 0.98397 1.22236 0.97538 0.97908 1.03966 1.44453 1.29591 1.59541 0.99267 1.18612 0.87633 1.06338 1.26040 0.89146 1.25484 0.95551 0.96720 0.98427 1.69798 1.10496 1.32195 1.41071 0.87196 0.76620 0.87108 0.79820 1.20753 1.22570 1.18910 1.21450 1.00885 0.87949 0.90928 1.21217 0.75504 0.91187 0.82447 1.90615 1.53787 1.64700 1.35931 0.92739 0.92388 0.92061 0.89991 0.91214 0.91266 0.91890 0.90033 0.93242 0.93213 0.92946 0.87476 0.94341 0.94666 0.92424 0.91653 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.23 37.16 0.38 -1.71 16 2 C 0.10 1.52 5.92 -4.04 -0.02 1.49 16 3 N -0.60 -11.16 2.81 -174.82 -0.49 -11.66 16 4 C 0.09 1.58 5.15 -4.51 -0.02 1.55 16 5 C 0.16 2.98 2.74 -67.51 -0.18 2.80 16 6 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.08 -1.26 2.23 -90.62 -0.20 -1.47 16 8 C -0.15 -1.88 8.86 37.16 0.33 -1.55 16 9 C -0.16 -2.84 8.10 37.16 0.30 -2.54 16 10 N -0.60 -13.40 2.55 -166.16 -0.42 -13.82 16 11 C -0.26 -6.53 6.41 -15.06 -0.10 -6.63 16 12 H 0.09 2.42 6.64 -52.49 -0.35 2.07 16 13 C 0.04 1.08 5.09 -17.43 -0.09 0.99 16 14 N -0.90 -25.99 13.97 55.49 0.78 -25.21 16 15 Si 0.86 22.16 24.44 -169.99 -4.15 18.00 16 16 H -0.28 -7.39 6.58 56.52 0.37 -7.01 16 17 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 18 H -0.26 -6.75 6.52 56.52 0.37 -6.38 16 19 C 0.12 2.60 5.47 -5.02 -0.03 2.57 16 20 C 0.51 11.13 6.09 -11.63 -0.07 11.06 16 21 O -0.57 -13.71 16.20 5.56 0.09 -13.62 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.40 7.10 -51.93 -0.37 1.04 16 26 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 27 H 0.07 1.23 5.77 -51.93 -0.30 0.93 16 28 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 29 H 0.08 1.49 6.98 -51.93 -0.36 1.12 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.58 7.20 -51.93 -0.37 0.21 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.11 2.36 4.99 -51.93 -0.26 2.10 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.10 2.44 4.03 -51.93 -0.21 2.23 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -29.92 284.49 -5.56 -35.48 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.94 Total: -0.03 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.29 Total: 6.57 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.14 Total: -50.69 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.15 Total: 18.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.92 -5.56 -35.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds