Wall clock time and date at job start Mon Mar 30 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47193 * 2 1 4 4 C 1.45637 * 117.70677 * 89.99762 * 3 2 1 5 5 C 1.52995 * 110.77613 * 201.87864 * 4 3 2 6 6 H 1.08992 * 109.75490 * 72.96825 * 5 4 3 7 7 C 1.52999 * 109.72248 * 193.60295 * 5 4 3 8 8 C 1.52997 * 109.46826 * 293.89880 * 7 5 4 9 9 C 1.53007 * 109.47221 * 53.89720 * 7 5 4 10 10 N 1.47269 * 108.18455 * 313.27721 * 5 4 3 11 11 C 1.36939 * 121.35155 * 241.48199 * 10 5 4 12 12 H 1.07999 * 119.99922 * 320.70086 * 11 10 5 13 13 C 1.38810 * 120.00153 * 140.71098 * 11 10 5 14 14 N 1.31615 * 120.00339 * 161.55019 * 13 11 10 15 15 Si 1.86811 * 119.99829 * 341.54511 * 13 11 10 16 16 H 1.48494 * 109.46985 * 91.46677 * 15 13 11 17 17 H 1.48499 * 109.47078 * 211.46609 * 15 13 11 18 18 H 1.48500 * 109.47027 * 331.46915 * 15 13 11 19 19 C 1.47045 * 117.29513 * 61.49816 * 10 5 4 20 20 C 1.33621 * 117.63778 * 269.92799 * 3 2 1 21 21 O 1.21281 * 118.66160 * 355.69180 * 20 3 2 22 22 H 1.09006 * 109.47179 * 300.00162 * 1 2 3 23 23 H 1.08995 * 109.47160 * 60.00244 * 1 2 3 24 24 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99477 * 2 1 3 26 26 H 1.09004 * 109.46988 * 119.99569 * 2 1 3 27 27 H 1.08999 * 109.21978 * 81.54950 * 4 3 2 28 28 H 1.08998 * 109.22086 * 322.21198 * 4 3 2 29 29 H 1.09000 * 109.46802 * 173.89631 * 7 5 4 30 30 H 1.08996 * 109.47174 * 305.44575 * 8 7 5 31 31 H 1.08998 * 109.47465 * 65.45025 * 8 7 5 32 32 H 1.09009 * 109.46877 * 185.44823 * 8 7 5 33 33 H 1.09000 * 109.46858 * 52.46201 * 9 7 5 34 34 H 1.09000 * 109.47031 * 172.46657 * 9 7 5 35 35 H 1.09001 * 109.46785 * 292.46795 * 9 7 5 36 36 H 0.97005 * 120.00010 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.56790 * 77.08739 * 19 10 5 38 38 H 1.09006 * 109.57259 * 197.32089 * 19 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0197 1.2894 5 6 2.2173 3.5433 1.1526 6 1 1.1931 3.8811 0.9949 7 6 2.7832 4.1855 2.4208 8 6 1.8511 3.8952 3.5989 9 6 4.1687 3.6052 2.7118 10 7 3.0472 3.9154 -0.0056 11 6 4.1578 4.7036 0.1375 12 1 4.1434 5.5374 0.8237 13 6 5.3020 4.4311 -0.5996 14 7 6.2237 5.3583 -0.7511 15 14 5.5338 2.7480 -1.3765 16 1 4.9856 2.7602 -2.7565 17 1 6.9811 2.4187 -1.4217 18 1 4.8188 1.7274 -0.5688 19 6 2.6347 3.4064 -1.3221 20 6 2.2264 1.9651 -1.1837 21 8 2.0795 1.3061 -2.1912 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.2148 1.7113 1.6774 28 1 1.4650 1.7083 1.9852 29 1 2.8633 5.2630 2.2777 30 1 0.8411 4.2223 3.3521 31 1 1.8466 2.8247 3.8035 32 1 2.2017 4.4322 4.4804 33 1 4.7932 3.6927 1.8227 34 1 4.6275 4.1548 3.5337 35 1 4.0723 2.5547 2.9861 36 1 7.0235 5.1677 -1.2659 37 1 1.7920 3.9907 -1.6917 38 1 3.4675 3.4844 -2.0211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:09 Heat of formation + Delta-G solvation = -27.783625 kcal Electronic energy + Delta-G solvation = -19097.170702 eV Core-core repulsion = 16360.744656 eV Total energy + Delta-G solvation = -2736.426047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62717 -39.01621 -36.72550 -35.39891 -33.80112 -31.80401 -29.64955 -28.72010 -27.48016 -25.92261 -24.38316 -23.28498 -20.91695 -19.82087 -18.72724 -18.05804 -17.49334 -17.10296 -16.28855 -15.94723 -15.73343 -15.00238 -14.74346 -14.61274 -14.40370 -14.33504 -13.83812 -13.64694 -13.38116 -13.07765 -12.87374 -12.69044 -12.67385 -12.41391 -12.25027 -11.96826 -11.83741 -11.66347 -11.37110 -11.24581 -10.98496 -10.61680 -9.70460 -8.79641 -8.22154 -5.61483 1.20960 1.33057 1.37634 1.49811 2.02607 2.32913 2.92266 3.16363 3.56313 3.96334 4.10776 4.16212 4.22592 4.31209 4.38904 4.48323 4.52519 4.57146 4.62020 4.65451 4.80945 4.91483 5.00099 5.01719 5.12900 5.24984 5.26656 5.36710 5.43676 5.48983 5.69609 5.84589 5.97228 6.19716 6.38388 6.79395 7.06566 7.50766 7.98067 8.95515 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.013972 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.478295 B = 2003.563815 C = 2989.051096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.094 3.906 5 C 0.158 3.842 6 H 0.062 0.938 7 C -0.073 4.073 8 C -0.137 4.137 9 C -0.156 4.156 10 N -0.613 5.613 11 C -0.215 4.215 12 H 0.074 0.926 13 C -0.004 4.004 14 N -0.940 5.940 15 Si 0.909 3.091 16 H -0.297 1.297 17 H -0.308 1.308 18 H -0.261 1.261 19 C 0.110 3.890 20 C 0.503 3.497 21 O -0.601 6.601 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 -8.088 9.553 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.325 5.325 4 C -0.029 4.029 5 C 0.054 3.946 6 H 0.079 0.921 7 C -0.092 4.092 8 C -0.195 4.195 9 C -0.213 4.213 10 N -0.340 5.340 11 C -0.345 4.345 12 H 0.092 0.908 13 C -0.201 4.201 14 N -0.585 5.585 15 Si 0.740 3.260 16 H -0.226 1.226 17 H -0.237 1.237 18 H -0.186 1.186 19 C -0.017 4.017 20 C 0.291 3.709 21 O -0.483 6.483 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.310 -8.361 9.028 16.714 hybrid contribution 0.898 -0.548 -1.128 1.542 sum -10.412 -8.910 7.901 15.818 Atomic orbital electron populations 1.22000 0.93845 1.03323 1.01840 1.21718 0.96078 0.82041 1.03290 1.47421 1.63900 1.15065 1.06115 1.22350 1.02467 0.94870 0.83218 1.21250 0.94237 0.91411 0.87750 0.92052 1.20921 0.95660 0.99556 0.93086 1.21827 0.98702 1.02431 0.96540 1.22111 0.97561 0.99566 1.02029 1.44590 1.29145 1.59445 1.00777 1.18483 0.87726 1.05176 1.23075 0.90807 1.25805 0.96129 0.98085 1.00074 1.69869 1.11466 1.33453 1.43694 0.86479 0.75510 0.85625 0.78396 1.22597 1.23661 1.18585 1.21401 1.00359 0.89421 0.90558 1.20970 0.75910 0.90684 0.83330 1.90598 1.55426 1.65096 1.37185 0.90835 0.94772 0.89421 0.92282 0.87938 0.91888 0.87035 0.92346 0.91780 0.91315 0.91960 0.92085 0.93516 0.92623 0.92878 0.90220 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 10.23 71.98 0.74 -2.56 16 2 C 0.09 2.49 5.92 86.38 0.51 3.00 16 3 N -0.59 -20.45 2.81 -826.04 -2.32 -22.77 16 4 C 0.09 2.76 5.15 86.54 0.45 3.20 16 5 C 0.16 5.26 2.74 44.84 0.12 5.39 16 6 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 7 C -0.07 -2.22 2.23 -10.79 -0.02 -2.24 16 8 C -0.14 -2.82 8.86 71.98 0.64 -2.19 16 9 C -0.16 -5.23 8.10 71.98 0.58 -4.64 16 10 N -0.61 -26.77 2.55 -679.61 -1.73 -28.50 16 11 C -0.22 -11.00 6.41 84.03 0.54 -10.46 16 12 H 0.07 4.03 6.64 -2.91 -0.02 4.01 16 13 C 0.00 -0.23 5.09 84.86 0.43 0.20 16 14 N -0.94 -56.57 13.97 21.65 0.30 -56.27 16 15 Si 0.91 47.46 24.44 68.60 1.68 49.14 16 16 H -0.30 -16.18 6.58 99.48 0.65 -15.53 16 17 H -0.31 -16.36 7.11 99.48 0.71 -15.65 16 18 H -0.26 -13.24 6.52 99.48 0.65 -12.59 16 19 C 0.11 4.94 5.47 85.45 0.47 5.41 16 20 C 0.50 21.52 6.09 87.75 0.53 22.05 16 21 O -0.60 -28.78 16.20 -3.03 -0.05 -28.83 16 22 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.91 7.10 -2.39 -0.02 1.89 16 26 H 0.10 2.15 8.01 -2.39 -0.02 2.14 16 27 H 0.06 1.98 5.77 -2.39 -0.01 1.97 16 28 H 0.11 2.29 7.35 -2.39 -0.02 2.27 16 29 H 0.06 2.05 6.98 -2.39 -0.02 2.03 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.18 7.20 -2.39 -0.02 1.16 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 2.66 4.99 -2.39 -0.01 2.65 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.61 6.50 -2.39 -0.02 1.60 16 36 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.07 3.52 4.03 -2.38 -0.01 3.51 16 Total: -1.00 -67.38 284.49 3.79 -63.59 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.93 Total: 6.50 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 4.99 Total: 17.15 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.75 Total: -107.54 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.83 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.68 Total: 49.14 kcal Total: -67.38 3.79 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.807 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds