Wall clock time and date at job start Mon Mar 30 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46831 * 2 1 4 4 C 1.45650 * 117.70676 * 89.99843 * 3 2 1 5 5 C 1.52985 * 110.77661 * 158.09749 * 4 3 2 6 6 H 1.09005 * 109.72381 * 287.05677 * 5 4 3 7 7 C 1.52994 * 109.72319 * 166.40155 * 5 4 3 8 8 C 1.53001 * 109.46999 * 53.82298 * 7 5 4 9 9 C 1.52994 * 109.47389 * 173.82095 * 7 5 4 10 10 N 1.47271 * 108.18827 * 46.72815 * 5 4 3 11 11 C 1.36931 * 121.35620 * 118.47460 * 10 5 4 12 12 H 1.08006 * 119.99511 * 333.92795 * 11 10 5 13 13 C 1.38811 * 120.00202 * 153.92956 * 11 10 5 14 14 N 1.31618 * 119.99829 * 165.19817 * 13 11 10 15 15 Si 1.86798 * 119.99909 * 345.20279 * 13 11 10 16 16 H 1.48503 * 109.47245 * 86.18424 * 15 13 11 17 17 H 1.48498 * 109.46669 * 206.18261 * 15 13 11 18 18 H 1.48495 * 109.47098 * 326.18042 * 15 13 11 19 19 C 1.47048 * 117.29083 * 298.49747 * 10 5 4 20 20 C 1.33384 * 117.70759 * 269.74008 * 3 2 1 21 21 O 1.21286 * 118.48575 * 4.29581 * 20 3 2 22 22 H 1.08995 * 109.47347 * 299.99739 * 1 2 3 23 23 H 1.09000 * 109.47460 * 60.00337 * 1 2 3 24 24 H 1.09008 * 109.46596 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47460 * 119.99663 * 2 1 3 26 26 H 1.08995 * 109.47347 * 240.00261 * 2 1 3 27 27 H 1.08990 * 109.21881 * 278.43420 * 4 3 2 28 28 H 1.09002 * 109.21382 * 37.76909 * 4 3 2 29 29 H 1.09004 * 109.47080 * 293.82337 * 7 5 4 30 30 H 1.09004 * 109.47002 * 174.44404 * 8 7 5 31 31 H 1.09007 * 109.46737 * 294.43558 * 8 7 5 32 32 H 1.08994 * 109.47200 * 54.43830 * 8 7 5 33 33 H 1.09004 * 109.47123 * 60.57501 * 9 7 5 34 34 H 1.09004 * 109.47444 * 180.57500 * 9 7 5 35 35 H 1.09003 * 109.47577 * 300.57306 * 9 7 5 36 36 H 0.97002 * 120.00122 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.57007 * 162.55830 * 19 10 5 38 38 H 1.08998 * 109.56975 * 282.90959 * 19 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2439 2.0197 1.2895 5 6 3.2227 3.1876 1.1529 6 1 4.2313 2.8056 0.9951 7 6 3.1862 4.0427 2.4210 8 6 3.4325 3.1546 3.6423 9 6 4.2736 5.1163 2.3436 10 7 2.8116 3.9988 -0.0054 11 6 2.4429 5.3097 0.1376 12 1 2.0440 5.6588 1.0786 13 6 2.5817 6.1899 -0.9268 14 7 1.9720 7.3561 -0.9001 15 14 3.6336 5.7192 -2.3969 16 1 2.8152 4.9431 -3.3630 17 1 4.1426 6.9491 -3.0552 18 1 4.7790 4.8913 -1.9412 19 6 2.8128 3.3436 -1.3219 20 6 2.2300 1.9642 -1.1809 21 8 1.9350 1.3555 -2.1876 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.2951 2.3903 1.6773 28 1 2.6538 1.2877 1.9854 29 1 2.2102 4.5199 2.5096 30 1 3.5048 3.7762 4.5349 31 1 2.6056 2.4532 3.7541 32 1 4.3622 2.6019 3.5081 33 1 4.0924 5.7553 1.4793 34 1 4.2543 5.7191 3.2516 35 1 5.2487 4.6394 2.2448 36 1 2.0693 7.9713 -1.6437 37 1 2.2127 3.9267 -2.0205 38 1 3.8355 3.2681 -1.6912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:12 Heat of formation + Delta-G solvation = -8.243905 kcal Electronic energy + Delta-G solvation = -18816.868219 eV Core-core repulsion = 16081.289478 eV Total energy + Delta-G solvation = -2735.578741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01696 -37.39231 -35.25205 -33.87492 -31.93154 -30.45890 -28.38296 -27.29787 -25.96679 -24.05262 -22.98059 -21.78083 -19.55711 -18.61444 -16.82562 -16.51124 -15.78844 -15.22705 -15.00636 -14.68287 -13.69820 -13.58440 -13.45042 -13.01749 -12.96826 -12.68595 -12.30379 -12.04229 -11.96002 -11.75692 -11.69395 -11.30987 -11.05930 -10.87285 -10.55692 -10.33979 -10.20852 -10.16736 -9.99211 -9.51853 -9.22742 -8.66452 -8.32508 -7.12819 -6.01926 -3.42966 3.16031 3.29857 3.39186 3.41568 3.50082 4.43368 4.61262 4.97482 5.18137 5.29162 5.39234 5.42032 5.48425 5.52349 5.60921 5.67024 5.80175 5.84347 5.90499 6.07455 6.08728 6.11990 6.22086 6.26701 6.30883 6.36997 6.41658 6.56471 6.65071 6.87525 6.98000 7.34476 7.69575 7.92597 8.22348 8.61334 8.80125 9.58205 9.91274 11.12661 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.012180 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.848205 B = 2298.259237 C = 3322.418580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.103 3.897 5 C 0.166 3.834 6 H 0.043 0.957 7 C -0.080 4.080 8 C -0.148 4.148 9 C -0.150 4.150 10 N -0.601 5.601 11 C -0.256 4.256 12 H 0.101 0.899 13 C 0.026 3.974 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.282 1.282 17 H -0.300 1.300 18 H -0.270 1.270 19 C 0.105 3.895 20 C 0.512 3.488 21 O -0.570 6.570 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -10.765 7.286 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.331 5.331 4 C -0.022 4.022 5 C 0.060 3.940 6 H 0.061 0.939 7 C -0.099 4.099 8 C -0.206 4.206 9 C -0.207 4.207 10 N -0.327 5.327 11 C -0.384 4.384 12 H 0.119 0.881 13 C -0.174 4.174 14 N -0.549 5.549 15 Si 0.708 3.292 16 H -0.210 1.210 17 H -0.228 1.228 18 H -0.195 1.195 19 C -0.023 4.023 20 C 0.300 3.700 21 O -0.449 6.449 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.822 -10.849 6.690 12.876 hybrid contribution 0.522 -0.208 -0.840 1.011 sum 2.344 -11.057 5.850 12.727 Atomic orbital electron populations 1.22067 0.96168 1.01455 1.02499 1.21452 0.94609 0.83692 1.02378 1.47309 1.65296 1.13909 1.06566 1.22125 1.00689 0.95810 0.83564 1.20860 0.94454 0.89946 0.88791 0.93945 1.21024 1.01304 0.95734 0.91847 1.21934 1.00924 0.99632 0.98108 1.21993 0.96453 0.98926 1.03347 1.44521 1.77836 1.09767 1.00558 1.18839 1.36080 0.82076 1.01369 0.88141 1.25224 0.98867 0.95288 0.98005 1.69746 1.43544 1.09179 1.32412 0.87165 0.81950 0.76503 0.83559 1.20983 1.22831 1.19547 1.21756 1.00070 0.89269 0.91177 1.21260 0.77156 0.89240 0.82329 1.90621 1.53133 1.65045 1.36133 0.92716 0.92124 0.92233 0.91224 0.90206 0.91933 0.91509 0.89986 0.92842 0.93112 0.93147 0.88329 0.94215 0.94485 0.92513 0.87425 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.23 37.16 0.38 -1.84 16 2 C 0.10 1.47 5.89 -4.04 -0.02 1.45 16 3 N -0.60 -10.56 2.81 -174.90 -0.49 -11.05 16 4 C 0.10 1.62 4.95 -4.51 -0.02 1.59 16 5 C 0.17 2.98 2.53 -67.52 -0.17 2.81 16 6 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.08 -1.31 1.99 -90.63 -0.18 -1.49 16 8 C -0.15 -1.84 8.53 37.16 0.32 -1.52 16 9 C -0.15 -2.61 8.80 37.15 0.33 -2.28 16 10 N -0.60 -13.42 2.81 -166.18 -0.47 -13.89 16 11 C -0.26 -6.51 7.08 -15.06 -0.11 -6.61 16 12 H 0.10 2.67 5.98 -52.48 -0.31 2.35 16 13 C 0.03 0.70 5.35 -17.43 -0.09 0.61 16 14 N -0.91 -26.51 13.97 55.49 0.78 -25.73 16 15 Si 0.88 21.75 24.10 -169.99 -4.10 17.66 16 16 H -0.28 -7.02 6.41 56.52 0.36 -6.65 16 17 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 18 H -0.27 -6.49 6.33 56.52 0.36 -6.13 16 19 C 0.11 2.39 4.25 -5.04 -0.02 2.37 16 20 C 0.51 10.92 7.57 -11.75 -0.09 10.83 16 21 O -0.57 -13.32 16.25 5.55 0.09 -13.23 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 26 H 0.08 1.24 7.22 -51.93 -0.38 0.86 16 27 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.07 0.84 7.00 -51.93 -0.36 0.48 16 29 H 0.08 1.49 6.70 -51.93 -0.35 1.14 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.56 7.00 -51.93 -0.36 0.20 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 2.10 5.52 -51.93 -0.29 1.81 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.11 2.69 4.85 -51.93 -0.25 2.44 16 38 H 0.06 1.40 6.17 -51.93 -0.32 1.08 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -29.77 286.70 -5.60 -35.37 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.05 Total: 0.64 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 0.32 Total: 5.92 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.18 Total: -50.67 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.10 Total: 17.66 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.77 -5.60 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.123 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds