Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46671 * 2 1 4 4 N 1.46895 * 109.47530 * 119.99812 * 2 1 3 5 5 C 1.47184 * 111.00155 * 180.02562 * 4 2 1 6 6 C 1.52982 * 108.73286 * 167.63697 * 5 4 2 7 7 N 1.46007 * 109.94758 * 50.34735 * 6 5 4 8 8 C 1.46503 * 118.53670 * 161.76428 * 7 6 5 9 9 H 1.08999 * 109.46836 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.46615 * 239.99738 * 8 7 6 11 11 C 1.50693 * 109.47373 * 120.00016 * 8 7 6 12 12 H 1.08004 * 120.00423 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00074 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00038 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00225 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46751 * 60.00334 * 15 13 11 17 17 H 1.48493 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47170 * 300.00389 * 15 13 11 19 19 C 1.33566 * 123.04583 * 341.65884 * 7 6 5 20 20 O 1.21275 * 118.67423 * 181.79126 * 19 7 6 21 21 C 1.46899 * 110.99960 * 57.10627 * 4 2 1 22 22 H 1.08992 * 109.47178 * 60.00057 * 1 2 3 23 23 H 1.09000 * 109.46518 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46798 * 299.99657 * 1 2 3 25 25 H 1.08998 * 109.47035 * 240.00482 * 2 1 3 26 26 H 1.09003 * 109.46632 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46891 * 299.99982 * 3 2 1 28 28 H 1.08996 * 109.47439 * 60.00202 * 3 2 1 29 29 H 1.08994 * 109.59813 * 47.85965 * 5 4 2 30 30 H 1.09004 * 109.58941 * 287.40674 * 5 4 2 31 31 H 1.09002 * 109.37777 * 170.46551 * 6 5 4 32 32 H 1.08999 * 109.37532 * 290.23393 * 6 5 4 33 33 H 1.08999 * 109.47213 * 299.99394 * 10 8 7 34 34 H 1.08997 * 109.47046 * 60.00130 * 10 8 7 35 35 H 1.09006 * 109.46517 * 179.97438 * 10 8 7 36 36 H 0.96997 * 120.00165 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.39187 * 293.82246 * 21 4 2 38 38 H 1.09001 * 109.38411 * 53.61766 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4911 -0.7115 1.2336 6 6 3.9444 -1.1567 2.6253 7 7 3.2500 -2.3831 3.0067 8 6 3.8083 -3.1954 4.0906 9 1 4.7163 -2.7243 4.4670 10 6 4.1403 -4.5923 3.5620 11 6 2.8004 -3.3066 5.2053 12 1 1.8401 -2.8206 5.1157 13 6 3.1041 -4.0290 6.3398 14 7 4.2732 -4.6213 6.4489 15 14 1.8550 -4.1664 7.7220 16 1 0.6177 -4.8076 7.2089 17 1 2.4209 -4.9898 8.8205 18 1 1.5336 -2.8105 8.2353 19 6 2.1272 -2.7987 2.4145 20 8 1.5982 -3.8131 2.8168 21 6 1.4931 -2.0620 1.2685 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.8746 0.2875 1.0265 30 1 3.8651 -1.4112 0.4861 31 1 5.0192 -1.3381 2.6147 32 1 3.7171 -0.3728 3.3477 33 1 3.2325 -5.0635 3.1854 34 1 4.8693 -4.5118 2.7557 35 1 4.5561 -5.1964 4.3684 36 1 4.4870 -5.1292 7.2471 37 1 0.4134 -2.0276 1.4133 38 1 1.7170 -2.5831 0.3377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -19.511800 kcal Electronic energy + Delta-G solvation = -18374.933824 eV Core-core repulsion = 15638.866470 eV Total energy + Delta-G solvation = -2736.067353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90263 -37.53456 -35.08193 -33.40634 -31.69032 -29.84586 -28.80627 -27.03410 -25.23717 -24.92611 -22.96999 -20.92533 -20.16651 -17.94589 -16.59033 -16.56719 -15.59091 -15.04165 -14.82256 -14.65243 -14.23291 -13.77302 -13.19158 -12.96702 -12.59203 -12.29654 -12.19805 -12.15842 -12.02734 -11.42258 -11.32631 -11.16390 -11.09288 -10.83101 -10.70088 -10.59730 -10.35200 -10.23284 -9.88265 -9.12683 -8.59181 -8.32204 -8.15353 -7.47006 -5.90321 -3.91869 3.41970 3.44617 3.50141 3.57107 3.82517 4.09513 4.56765 4.81373 4.87729 5.01755 5.19985 5.23346 5.40402 5.42549 5.54549 5.56060 5.65723 5.67302 5.73815 5.78664 5.93871 6.00004 6.12684 6.18762 6.32508 6.83429 6.96979 7.04082 7.06635 7.24081 7.33543 7.84190 7.94923 8.19467 8.32335 8.72770 9.05776 9.28916 9.71303 11.15823 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035070 B = 0.006725 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.218895 B = 4162.265288 C = 4374.216843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.146 4.146 4 N -0.525 5.525 5 C 0.033 3.967 6 C 0.122 3.878 7 N -0.589 5.589 8 C 0.267 3.733 9 H 0.041 0.959 10 C -0.154 4.154 11 C -0.492 4.492 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.510 3.490 20 O -0.529 6.529 21 C 0.037 3.963 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.001 0.999 35 H 0.089 0.911 36 H 0.260 0.740 37 H 0.105 0.895 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 10.614 -13.126 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 C -0.203 4.203 4 N -0.252 5.252 5 C -0.095 4.095 6 C -0.002 4.002 7 N -0.322 5.322 8 C 0.167 3.833 9 H 0.059 0.941 10 C -0.213 4.213 11 C -0.531 4.531 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.541 5.541 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.205 1.205 19 C 0.296 3.704 20 O -0.405 6.405 21 C -0.094 4.094 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.020 0.980 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.032 10.224 -12.361 16.170 hybrid contribution -0.292 -0.464 -0.007 0.548 sum -2.324 9.760 -12.368 15.926 Atomic orbital electron populations 1.21901 0.94224 1.02286 1.02187 1.21669 0.95911 0.95124 0.90748 1.21903 1.01023 0.95179 1.02208 1.62543 1.08019 1.15819 1.38821 1.22599 0.87946 1.01679 0.97286 1.21340 0.96376 0.88001 0.94532 1.47797 1.24679 1.23235 1.36502 1.18858 0.93930 0.87555 0.82957 0.94121 1.22140 0.99205 1.00564 0.99361 1.21211 1.00997 1.31186 0.99713 0.92438 1.24839 0.95480 0.95518 0.98361 1.69859 1.21157 1.34624 1.28425 0.86552 0.81722 0.77883 0.81209 1.20269 1.21426 1.20488 1.19561 0.81227 0.85720 0.83921 1.90715 1.61150 1.25492 1.63192 1.22437 1.01680 0.87760 0.97478 0.92326 0.92388 0.91526 0.94310 0.92434 0.92361 0.91527 0.88983 0.94266 0.91103 0.91568 0.92820 0.98032 0.89222 0.93025 0.87698 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.87 37.16 0.33 -1.17 16 2 C 0.07 0.80 2.64 -67.71 -0.18 0.62 16 3 C -0.15 -1.32 9.00 37.16 0.33 -0.99 16 4 N -0.53 -7.41 4.59 -228.12 -1.05 -8.46 16 5 C 0.03 0.44 5.43 -3.68 -0.02 0.42 16 6 C 0.12 2.03 6.50 -4.32 -0.03 2.00 16 7 N -0.59 -12.91 2.79 -168.36 -0.47 -13.38 16 8 C 0.27 6.96 2.63 -69.08 -0.18 6.78 16 9 H 0.04 1.09 7.84 -51.93 -0.41 0.68 16 10 C -0.15 -4.04 8.87 37.16 0.33 -3.71 16 11 C -0.49 -14.35 7.41 -34.44 -0.26 -14.60 16 12 H 0.06 1.76 7.35 -52.48 -0.39 1.37 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.90 -26.43 11.32 55.43 0.63 -25.80 16 15 Si 0.90 22.79 29.54 -169.99 -5.02 17.77 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C 0.51 11.28 6.83 -11.74 -0.08 11.20 16 20 O -0.53 -14.05 13.57 5.56 0.08 -13.98 16 21 C 0.04 0.61 4.92 -5.19 -0.03 0.59 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.61 6.50 -51.93 -0.34 0.28 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.49 6.16 -51.93 -0.32 0.17 16 27 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.97 5.76 -51.93 -0.30 0.67 16 30 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.48 6.04 -51.93 -0.31 1.17 16 34 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.10 1.68 6.61 -51.93 -0.34 1.34 16 38 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 LS Contribution 293.44 15.07 4.42 4.42 Total: -1.00 -32.45 293.44 -7.36 -39.81 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.08 Total: -3.12 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 0.13 Total: 2.73 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.89 Total: -47.64 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.45 -7.36 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.302 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds