Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46671 * 2 1 4 4 N 1.46895 * 109.47530 * 119.99812 * 2 1 3 5 5 C 1.47184 * 111.00155 * 180.02562 * 4 2 1 6 6 C 1.52982 * 108.73286 * 167.63697 * 5 4 2 7 7 N 1.46007 * 109.94758 * 50.34735 * 6 5 4 8 8 C 1.46503 * 118.53670 * 161.76428 * 7 6 5 9 9 H 1.08999 * 109.46836 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.46615 * 239.99738 * 8 7 6 11 11 C 1.50693 * 109.47373 * 120.00016 * 8 7 6 12 12 H 1.08004 * 120.00423 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00074 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00038 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00225 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46751 * 60.00334 * 15 13 11 17 17 H 1.48493 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47170 * 300.00389 * 15 13 11 19 19 C 1.33566 * 123.04583 * 341.65884 * 7 6 5 20 20 O 1.21275 * 118.67423 * 181.79126 * 19 7 6 21 21 C 1.46899 * 110.99960 * 57.10627 * 4 2 1 22 22 H 1.08992 * 109.47178 * 60.00057 * 1 2 3 23 23 H 1.09000 * 109.46518 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46798 * 299.99657 * 1 2 3 25 25 H 1.08998 * 109.47035 * 240.00482 * 2 1 3 26 26 H 1.09003 * 109.46632 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46891 * 299.99982 * 3 2 1 28 28 H 1.08996 * 109.47439 * 60.00202 * 3 2 1 29 29 H 1.08994 * 109.59813 * 47.85965 * 5 4 2 30 30 H 1.09004 * 109.58941 * 287.40674 * 5 4 2 31 31 H 1.09002 * 109.37777 * 170.46551 * 6 5 4 32 32 H 1.08999 * 109.37532 * 290.23393 * 6 5 4 33 33 H 1.08999 * 109.47213 * 299.99394 * 10 8 7 34 34 H 1.08997 * 109.47046 * 60.00130 * 10 8 7 35 35 H 1.09006 * 109.46517 * 179.97438 * 10 8 7 36 36 H 0.96997 * 120.00165 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.39187 * 293.82246 * 21 4 2 38 38 H 1.09001 * 109.38411 * 53.61766 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4911 -0.7115 1.2336 6 6 3.9444 -1.1567 2.6253 7 7 3.2500 -2.3831 3.0067 8 6 3.8083 -3.1954 4.0906 9 1 4.7163 -2.7243 4.4670 10 6 4.1403 -4.5923 3.5620 11 6 2.8004 -3.3066 5.2053 12 1 1.8401 -2.8206 5.1157 13 6 3.1041 -4.0290 6.3398 14 7 4.2732 -4.6213 6.4489 15 14 1.8550 -4.1664 7.7220 16 1 0.6177 -4.8076 7.2089 17 1 2.4209 -4.9898 8.8205 18 1 1.5336 -2.8105 8.2353 19 6 2.1272 -2.7987 2.4145 20 8 1.5982 -3.8131 2.8168 21 6 1.4931 -2.0620 1.2685 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.8746 0.2875 1.0265 30 1 3.8651 -1.4112 0.4861 31 1 5.0192 -1.3381 2.6147 32 1 3.7171 -0.3728 3.3477 33 1 3.2325 -5.0635 3.1854 34 1 4.8693 -4.5118 2.7557 35 1 4.5561 -5.1964 4.3684 36 1 4.4870 -5.1292 7.2471 37 1 0.4134 -2.0276 1.4133 38 1 1.7170 -2.5831 0.3377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -42.217064 kcal Electronic energy + Delta-G solvation = -18375.918398 eV Core-core repulsion = 15638.866470 eV Total energy + Delta-G solvation = -2737.051927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41812 -38.84484 -36.86465 -35.14822 -33.20156 -31.24095 -30.48906 -27.95687 -27.27287 -26.44469 -24.40069 -22.68704 -21.13175 -19.55351 -18.52542 -17.92050 -17.16296 -16.68596 -16.36812 -15.99583 -15.64055 -15.33048 -14.70916 -14.25996 -14.20723 -13.74153 -13.55882 -13.28512 -13.16586 -12.93919 -12.87217 -12.73013 -12.61429 -12.51168 -12.22464 -12.18744 -12.01767 -11.88032 -11.48460 -11.17285 -10.61407 -10.20225 -9.39944 -9.27702 -8.11659 -6.20412 1.35804 1.39865 1.47015 1.90842 2.34982 2.50046 2.79458 3.15587 3.71409 3.89953 3.98213 4.10312 4.30153 4.33608 4.46257 4.54001 4.61332 4.68948 4.77622 4.88440 4.93529 4.96401 5.00270 5.02494 5.12028 5.15531 5.29020 5.37089 5.45766 5.62062 5.84428 5.89212 6.03967 6.14417 6.21986 6.77280 6.98255 7.39768 7.62124 8.92344 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035070 B = 0.006725 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.218895 B = 4162.265288 C = 4374.216843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.141 4.141 4 N -0.537 5.537 5 C 0.042 3.958 6 C 0.113 3.887 7 N -0.593 5.593 8 C 0.268 3.732 9 H 0.032 0.968 10 C -0.139 4.139 11 C -0.509 4.509 12 H 0.034 0.966 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.954 3.046 16 H -0.287 1.287 17 H -0.274 1.274 18 H -0.269 1.269 19 C 0.498 3.502 20 O -0.586 6.586 21 C 0.054 3.946 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.263 0.737 37 H 0.107 0.893 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 12.410 -14.582 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 C -0.199 4.199 4 N -0.265 5.265 5 C -0.086 4.086 6 C -0.010 4.010 7 N -0.325 5.325 8 C 0.166 3.834 9 H 0.050 0.950 10 C -0.198 4.198 11 C -0.548 4.548 12 H 0.052 0.948 13 C -0.185 4.185 14 N -0.558 5.558 15 Si 0.780 3.220 16 H -0.213 1.213 17 H -0.199 1.199 18 H -0.195 1.195 19 C 0.286 3.714 20 O -0.466 6.466 21 C -0.077 4.077 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.936 12.072 -13.842 18.468 hybrid contribution -0.297 -0.986 0.418 1.112 sum -2.233 11.086 -13.424 17.552 Atomic orbital electron populations 1.21912 0.93894 1.01950 1.02803 1.21814 0.96236 0.95915 0.89517 1.21886 1.01516 0.93686 1.02785 1.62551 1.08587 1.14158 1.41188 1.22603 0.87527 1.03645 0.94813 1.21666 0.96922 0.85650 0.96779 1.47813 1.25002 1.24313 1.35333 1.18563 0.92968 0.88101 0.83738 0.95034 1.21916 0.98524 1.00260 0.99076 1.21351 1.00644 1.31520 1.01297 0.94784 1.25542 0.97241 0.95237 1.00440 1.69945 1.22173 1.34716 1.29003 0.85686 0.79149 0.78309 0.78890 1.21272 1.19921 1.19459 1.20555 0.80760 0.85375 0.84733 1.90676 1.62609 1.28093 1.65265 1.22180 1.01169 0.88953 0.95355 0.90032 0.93225 0.92613 0.93169 0.91587 0.90341 0.92447 0.85501 0.93520 0.89671 0.91908 0.94946 0.95625 0.91541 0.92767 0.87478 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.87 71.98 0.64 -1.98 16 2 C 0.07 1.33 2.64 44.92 0.12 1.45 16 3 C -0.14 -2.00 9.00 71.98 0.65 -1.36 16 4 N -0.54 -13.85 4.59 -875.63 -4.02 -17.87 16 5 C 0.04 0.98 5.43 86.24 0.47 1.45 16 6 C 0.11 3.59 6.50 86.47 0.56 4.15 16 7 N -0.59 -26.03 2.79 -805.64 -2.25 -28.28 16 8 C 0.27 14.26 2.63 44.24 0.12 14.37 16 9 H 0.03 1.72 7.84 -2.39 -0.02 1.70 16 10 C -0.14 -7.44 8.87 71.98 0.64 -6.80 16 11 C -0.51 -30.50 7.41 25.60 0.19 -30.31 16 12 H 0.03 2.15 7.35 -2.91 -0.02 2.13 16 13 C 0.01 0.80 5.30 84.66 0.45 1.25 16 14 N -0.92 -54.58 11.32 21.45 0.24 -54.33 16 15 Si 0.95 47.34 29.54 68.60 2.03 49.36 16 16 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 17 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 19 C 0.50 22.19 6.83 87.71 0.60 22.79 16 20 O -0.59 -32.18 13.57 -3.01 -0.04 -32.22 16 21 C 0.05 1.72 4.92 85.42 0.42 2.14 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.05 0.95 6.50 -2.39 -0.02 0.94 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.83 6.16 -2.39 -0.01 0.81 16 27 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.13 2.13 5.76 -2.39 -0.01 2.11 16 30 H 0.05 1.06 8.08 -2.38 -0.02 1.04 16 31 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.03 1.83 6.04 -2.39 -0.01 1.82 16 34 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 3.83 6.07 -2.38 -0.01 3.82 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.11 3.36 6.61 -2.39 -0.02 3.34 16 38 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 Total: -1.00 -72.05 293.44 1.84 -70.21 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.03 Total: 5.96 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.85 Total: 7.16 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -6.02 Total: -100.48 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.04 Total: -32.22 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -72.05 1.84 -70.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.994 kcal (2) G-P(sol) polarization free energy of solvation -72.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds