Wall clock time and date at job start Mon Mar 30 2020 03:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47365 * 2 1 4 4 C 1.47259 * 119.95072 * 90.00455 * 3 2 1 5 5 C 1.53057 * 108.55966 * 109.34428 * 4 3 2 6 6 N 1.45561 * 110.85377 * 85.74082 * 5 4 3 7 7 C 1.46904 * 111.00203 * 59.45389 * 6 5 4 8 8 H 1.09004 * 109.46762 * 296.75429 * 7 6 5 9 9 C 1.52999 * 109.47085 * 176.75656 * 7 6 5 10 10 C 1.50702 * 109.46981 * 56.75313 * 7 6 5 11 11 H 1.08001 * 119.99843 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00064 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00031 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00050 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47251 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47191 * 120.00485 * 14 12 10 17 17 H 1.48501 * 109.47393 * 240.00257 * 14 12 10 18 18 C 1.45586 * 116.01515 * 291.53763 * 6 5 4 19 19 C 1.53149 * 110.68424 * 68.21515 * 18 6 5 20 20 C 1.33628 * 119.94950 * 270.02200 * 3 2 1 21 21 O 1.21281 * 120.05127 * 0.20581 * 20 3 2 22 22 H 1.08996 * 109.47720 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46727 * 299.99867 * 1 2 3 24 24 H 1.08998 * 109.47303 * 59.99615 * 1 2 3 25 25 H 1.09010 * 109.46727 * 240.00133 * 2 1 3 26 26 H 1.08998 * 109.47303 * 120.00385 * 2 1 3 27 27 H 1.08998 * 109.62042 * 229.06613 * 4 3 2 28 28 H 1.08999 * 109.62070 * 349.62478 * 4 3 2 29 29 H 1.08996 * 109.20172 * 206.08989 * 5 4 3 30 30 H 1.08997 * 109.20405 * 325.38579 * 5 4 3 31 31 H 1.09005 * 109.46584 * 186.09378 * 9 7 6 32 32 H 1.08996 * 109.47087 * 306.08780 * 9 7 6 33 33 H 1.08999 * 109.47168 * 66.09277 * 9 7 6 34 34 H 0.96994 * 120.00070 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.23878 * 307.90192 * 18 6 5 36 36 H 1.09000 * 109.20419 * 188.49914 * 18 6 5 37 37 H 1.09004 * 109.68114 * 156.13995 * 19 18 6 38 38 H 1.08992 * 109.68586 * 35.58077 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2635 2.0743 1.2759 5 6 3.7742 2.2398 1.4580 6 7 4.2474 3.4447 0.7923 7 6 3.5818 4.6390 1.3296 8 1 2.5125 4.5817 1.1256 9 6 4.1617 5.8888 0.6644 10 6 3.8060 4.7122 2.8181 11 1 4.3853 3.9482 3.3151 12 6 3.2723 5.7550 3.5452 13 7 2.5672 6.6857 2.9398 14 14 3.5508 5.8461 5.3900 15 1 4.3714 4.6872 5.8246 16 1 4.2613 7.1072 5.7217 17 1 2.2417 5.8166 6.0904 18 6 4.1998 3.4310 -0.6627 19 6 2.7501 3.4368 -1.1566 20 6 2.2403 2.0103 -1.1578 21 8 2.0342 1.4400 -2.2082 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.7875 3.0546 1.2573 28 1 1.8585 1.4832 2.0973 29 1 4.0021 2.3051 2.5219 30 1 4.2833 1.3735 1.0356 31 1 3.7468 6.7784 1.1385 32 1 5.2459 5.8899 0.7760 33 1 3.9054 5.8886 -0.3951 34 1 2.1915 7.4191 3.4514 35 1 4.7007 2.5353 -1.0300 36 1 4.7134 4.3125 -1.0465 37 1 2.7083 3.8426 -2.1674 38 1 2.1379 4.0449 -0.4907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:19 Heat of formation + Delta-G solvation = -40.213346 kcal Electronic energy + Delta-G solvation = -18673.402393 eV Core-core repulsion = 15936.437353 eV Total energy + Delta-G solvation = -2736.965040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65839 -39.03557 -36.80606 -34.95055 -32.48847 -32.40304 -30.78416 -28.05436 -27.24630 -25.32909 -24.06108 -23.73755 -20.56639 -19.76843 -18.60384 -17.85812 -17.66085 -16.83317 -16.06900 -16.01448 -15.86535 -15.04538 -14.85935 -14.66308 -14.05442 -13.78080 -13.66033 -13.44280 -13.28664 -12.97442 -12.88722 -12.61094 -12.43947 -12.37120 -12.29732 -11.96930 -11.94605 -11.76001 -11.49216 -10.86544 -10.69524 -10.42313 -9.98491 -8.63654 -8.03432 -6.13914 1.45747 1.50558 1.56377 1.59369 2.04011 2.48119 3.25317 3.34037 3.48165 4.05276 4.09793 4.15209 4.23280 4.31025 4.39910 4.47352 4.51037 4.54383 4.70047 4.78625 4.87318 4.95652 5.00008 5.09760 5.12272 5.20012 5.27069 5.31403 5.58120 5.61046 5.82145 5.90702 6.30695 6.38824 6.51441 6.87247 7.02160 7.12084 7.55534 9.01438 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.007831 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.486745 B = 3574.886167 C = 4066.906189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.079 3.921 5 C 0.066 3.934 6 N -0.560 5.560 7 C 0.219 3.781 8 H -0.009 1.009 9 C -0.131 4.131 10 C -0.509 4.509 11 H 0.063 0.937 12 C 0.015 3.985 13 N -0.919 5.919 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.285 1.285 18 C 0.083 3.917 19 C -0.176 4.176 20 C 0.516 3.484 21 O -0.593 6.593 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -9.805 -2.103 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.018 4.018 3 N -0.334 5.334 4 C -0.045 4.045 5 C -0.063 4.063 6 N -0.282 5.282 7 C 0.113 3.887 8 H 0.008 0.992 9 C -0.189 4.189 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.183 4.183 13 N -0.559 5.559 14 Si 0.778 3.222 15 H -0.189 1.189 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.046 4.046 19 C -0.218 4.218 20 C 0.305 3.695 21 O -0.475 6.475 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.745 -9.945 -2.460 10.271 hybrid contribution -0.910 0.571 0.676 1.269 sum -1.655 -9.374 -1.784 9.685 Atomic orbital electron populations 1.22067 0.95297 1.03184 1.01225 1.21639 0.94979 0.81496 1.03695 1.48150 1.64189 1.14799 1.06264 1.22629 0.99250 0.97867 0.84752 1.22083 0.91760 0.91643 1.00818 1.60012 1.60416 1.03910 1.03887 1.19043 0.90800 0.85531 0.93321 0.99213 1.21761 0.98990 1.01201 0.96970 1.21470 1.31800 1.08702 0.92784 0.91884 1.25582 0.95237 0.95519 1.02012 1.70007 1.36135 1.13163 1.36609 0.85614 0.77543 0.77870 0.81211 1.18906 1.21534 1.21145 1.21697 0.92089 1.02792 0.88065 1.22728 1.01333 0.93038 1.04728 1.20825 0.76214 0.89260 0.83172 1.90615 1.55091 1.69336 1.32459 0.89278 0.92259 0.94837 0.91186 0.87789 0.91652 0.87431 0.89336 0.91038 0.92125 0.95019 0.95210 0.93207 0.91321 0.89405 0.88167 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.24 71.98 0.74 -2.84 16 2 C 0.10 2.53 6.06 86.38 0.52 3.05 16 3 N -0.60 -18.32 2.48 -820.39 -2.03 -20.35 16 4 C 0.08 2.43 5.81 86.25 0.50 2.93 16 5 C 0.07 2.18 5.34 86.57 0.46 2.64 16 6 N -0.56 -21.24 4.45 -881.96 -3.92 -25.16 16 7 C 0.22 9.83 1.29 44.17 0.06 9.88 16 8 H -0.01 -0.45 4.53 -2.38 -0.01 -0.46 16 9 C -0.13 -5.93 8.32 71.98 0.60 -5.33 16 10 C -0.51 -25.08 7.93 25.60 0.20 -24.88 16 11 H 0.06 3.07 6.43 -2.91 -0.02 3.05 16 12 C 0.02 0.77 5.29 84.65 0.45 1.22 16 13 N -0.92 -49.57 11.29 21.45 0.24 -49.33 16 14 Si 0.95 40.93 29.54 68.60 2.03 42.95 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 18 C 0.08 2.79 5.08 86.60 0.44 3.23 16 19 C -0.18 -6.03 5.33 30.15 0.16 -5.87 16 20 C 0.52 18.28 6.82 88.09 0.60 18.88 16 21 O -0.59 -24.05 16.65 -3.03 -0.05 -24.10 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.87 7.41 -2.38 -0.02 1.85 16 26 H 0.10 1.94 8.03 -2.39 -0.02 1.92 16 27 H 0.07 2.44 4.95 -2.39 -0.01 2.43 16 28 H 0.11 2.75 7.92 -2.39 -0.02 2.74 16 29 H 0.09 3.08 6.25 -2.39 -0.01 3.07 16 30 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 31 H 0.06 3.10 5.93 -2.38 -0.01 3.08 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 1.18 6.58 -2.39 -0.02 1.17 16 34 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.07 2.20 7.87 -2.39 -0.02 2.18 16 36 H 0.09 2.91 6.33 -2.39 -0.02 2.90 16 37 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.08 3.20 5.09 -2.39 -0.01 3.19 16 Total: -1.00 -58.56 287.61 2.04 -56.52 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.05 Total: 16.55 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 4.73 Total: 2.91 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.71 Total: -94.84 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -58.56 2.04 -56.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.311 kcal (2) G-P(sol) polarization free energy of solvation -58.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds