Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47196 * 2 1 4 4 C 1.50704 * 109.46683 * 240.00670 * 2 1 3 5 5 H 1.08008 * 119.99585 * 239.99943 * 4 2 1 6 6 C 1.37880 * 120.00312 * 59.99674 * 4 2 1 7 7 N 1.31512 * 119.99552 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47023 * 60.00175 * 8 6 4 10 10 H 1.48496 * 109.47081 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46974 * 300.00513 * 8 6 4 12 12 N 1.46893 * 109.47468 * 120.00505 * 2 1 3 13 13 C 1.46903 * 111.00179 * 274.99866 * 12 2 1 14 14 H 1.09008 * 109.46781 * 37.59995 * 13 12 2 15 15 C 1.52998 * 109.46930 * 277.60431 * 13 12 2 16 16 C 1.52994 * 109.47421 * 157.59972 * 13 12 2 17 17 N 1.46497 * 109.47323 * 302.71843 * 16 13 12 18 18 C 1.46760 * 124.35031 * 275.87825 * 17 16 13 19 19 C 1.54479 * 105.47557 * 197.01343 * 18 17 16 20 20 C 1.54625 * 101.76681 * 334.58616 * 19 18 17 21 21 C 1.34421 * 124.35052 * 95.57733 * 17 16 13 22 22 O 1.21277 * 124.94323 * 359.56963 * 21 17 16 23 23 H 1.08999 * 109.46726 * 299.99749 * 1 2 3 24 24 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47192 * 59.99573 * 1 2 3 26 26 H 0.97005 * 119.99571 * 180.02562 * 7 6 4 27 27 H 1.00905 * 111.00337 * 38.95166 * 12 2 1 28 28 H 1.08996 * 109.46914 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.46871 * 299.99612 * 15 13 12 30 30 H 1.09000 * 109.47308 * 59.99589 * 15 13 12 31 31 H 1.09002 * 109.46935 * 62.71527 * 16 13 12 32 32 H 1.09001 * 109.47293 * 182.71425 * 16 13 12 33 33 H 1.08999 * 110.24482 * 316.01438 * 18 17 16 34 34 H 1.09002 * 110.24639 * 77.92870 * 18 17 16 35 35 H 1.09009 * 110.96937 * 92.70447 * 19 18 17 36 36 H 1.09003 * 110.97326 * 216.46061 * 19 18 17 37 37 H 1.08995 * 110.48721 * 143.47751 * 20 19 18 38 38 H 1.09004 * 110.48102 * 265.98889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4829 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0082 9 1 1.8278 -2.5196 -4.0084 10 1 1.8266 -0.4196 -5.2206 11 1 3.8073 -1.1187 -4.0079 12 7 2.0198 -0.6925 1.1993 13 6 2.0826 0.2224 2.3469 14 1 1.2318 0.9032 2.3158 15 6 3.3823 1.0274 2.2866 16 6 2.0426 -0.5850 3.6458 17 7 0.8291 -1.4052 3.6737 18 6 -0.4846 -0.9256 4.1186 19 6 -1.3182 -2.1978 4.3887 20 6 -0.6295 -3.2282 3.4641 21 6 0.7745 -2.6922 3.2896 22 8 1.7145 -3.3315 2.8670 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 0.7087 1.1616 -3.4843 27 1 1.4497 -1.4980 1.4099 28 1 3.4292 1.7060 3.1383 29 1 4.2331 0.3467 2.3176 30 1 3.4109 1.6027 1.3612 31 1 2.9190 -1.2309 3.6992 32 1 2.0406 0.0959 4.4970 33 1 -0.3827 -0.3403 5.0325 34 1 -0.9517 -0.3259 3.3374 35 1 -1.2424 -2.4994 5.4335 36 1 -2.3593 -2.0504 4.1015 37 1 -0.6099 -4.2107 3.9356 38 1 -1.1393 -3.2778 2.5019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = -36.945350 kcal Electronic energy + Delta-G solvation = -18274.529293 eV Core-core repulsion = 15537.705964 eV Total energy + Delta-G solvation = -2736.823329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28499 -36.76987 -36.04707 -33.65051 -31.79905 -30.29425 -27.50355 -26.88175 -25.90468 -25.05714 -21.98490 -20.92180 -19.53768 -19.12877 -16.72317 -16.53390 -16.01820 -15.45510 -14.82012 -14.51378 -13.95464 -13.55923 -13.47358 -12.95857 -12.84329 -12.43680 -12.36970 -11.80983 -11.70913 -11.46263 -11.31507 -11.24052 -11.10183 -10.93575 -10.81720 -10.57482 -10.33872 -10.01684 -9.76122 -9.52563 -8.92902 -8.45644 -8.28817 -7.09417 -5.91933 -3.93884 2.84471 3.18255 3.40099 3.42464 3.47877 4.42602 4.45713 4.50878 4.76104 5.05124 5.12292 5.34286 5.39593 5.44376 5.57068 5.62927 5.66779 5.69533 5.80770 5.92552 5.97304 6.14043 6.32671 6.56780 6.67989 6.70722 6.84610 6.90403 7.16945 7.31732 7.45955 7.78554 7.98366 8.36316 8.41800 8.68119 8.74889 9.14425 9.71218 11.15229 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.007079 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.049413 B = 3954.510605 C = 4242.250919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.491 4.491 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.675 5.675 13 C 0.065 3.935 14 H 0.033 0.967 15 C -0.134 4.134 16 C 0.125 3.875 17 N -0.620 5.620 18 C 0.101 3.899 19 C -0.130 4.130 20 C -0.158 4.158 21 C 0.512 3.488 22 O -0.516 6.516 23 H 0.001 0.999 24 H 0.023 0.977 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.328 0.672 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 -1.653 15.293 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.308 5.308 13 C -0.046 4.046 14 H 0.051 0.949 15 C -0.192 4.192 16 C 0.003 3.997 17 N -0.355 5.355 18 C -0.023 4.023 19 C -0.168 4.168 20 C -0.198 4.198 21 C 0.300 3.700 22 O -0.391 6.391 23 H 0.020 0.980 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.962 -1.764 14.766 15.390 hybrid contribution -0.832 -0.132 -0.734 1.117 sum -4.794 -1.897 14.032 14.949 Atomic orbital electron populations 1.22408 1.01123 0.98743 1.00136 1.19179 0.89241 0.94408 0.86779 0.94854 1.21170 1.29898 1.12277 0.89663 0.92056 1.24938 0.95431 0.95237 0.98955 1.69877 1.37622 1.23304 1.23277 0.86579 0.79249 0.79641 0.82030 1.20405 1.21504 1.20279 1.60829 1.58531 1.08585 1.02850 1.21813 0.97197 0.94459 0.91171 0.94915 1.21711 0.97373 0.99117 1.01038 1.21699 0.86383 0.93976 0.97664 1.48289 1.09753 1.12042 1.65401 1.22059 0.83246 0.96901 1.00050 1.22567 0.99793 0.94282 1.00155 1.22352 0.94569 1.00400 1.02466 1.20854 0.90589 0.81906 0.76683 1.90780 1.41787 1.61901 1.44651 0.97985 0.95816 0.89310 0.93154 0.85227 0.93806 0.92262 0.91891 0.89267 0.90854 0.90638 0.91097 0.90241 0.89338 0.88318 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.92 37.16 0.33 -3.75 16 2 C 0.21 5.56 2.39 -68.86 -0.16 5.39 16 3 H 0.03 0.95 6.92 -51.93 -0.36 0.59 16 4 C -0.49 -14.35 8.84 -34.44 -0.30 -14.66 16 5 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 6 C 0.05 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -26.39 11.32 55.43 0.63 -25.77 16 8 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.68 -15.53 6.03 -100.95 -0.61 -16.14 16 13 C 0.07 1.20 2.76 -67.72 -0.19 1.01 16 14 H 0.03 0.62 7.12 -51.92 -0.37 0.25 16 15 C -0.13 -2.28 9.37 37.16 0.35 -1.94 16 16 C 0.12 1.88 5.65 -4.05 -0.02 1.85 16 17 N -0.62 -8.97 2.59 -172.42 -0.45 -9.41 16 18 C 0.10 1.07 7.35 -3.12 -0.02 1.05 16 19 C -0.13 -1.11 7.18 -25.10 -0.18 -1.29 16 20 C -0.16 -1.82 6.86 -26.74 -0.18 -2.01 16 21 C 0.51 8.37 6.50 -10.86 -0.07 8.30 16 22 O -0.52 -10.78 16.84 5.56 0.09 -10.68 16 23 H 0.00 0.03 7.40 -51.93 -0.38 -0.36 16 24 H 0.02 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.33 7.64 5.22 -39.29 -0.21 7.43 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.21 7.24 -51.93 -0.38 0.84 16 31 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -32.87 304.08 -7.51 -40.38 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.19 Total: 4.21 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.55 Total: -4.57 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.43 Total: -51.32 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.87 -7.51 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.438 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds