Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47196 * 2 1 4 4 C 1.50704 * 109.46683 * 240.00670 * 2 1 3 5 5 H 1.08008 * 119.99585 * 239.99943 * 4 2 1 6 6 C 1.37880 * 120.00312 * 59.99674 * 4 2 1 7 7 N 1.31512 * 119.99552 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47023 * 60.00175 * 8 6 4 10 10 H 1.48496 * 109.47081 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46974 * 300.00513 * 8 6 4 12 12 N 1.46893 * 109.47468 * 120.00505 * 2 1 3 13 13 C 1.46903 * 111.00179 * 274.99866 * 12 2 1 14 14 H 1.09008 * 109.46781 * 37.59995 * 13 12 2 15 15 C 1.52998 * 109.46930 * 277.60431 * 13 12 2 16 16 C 1.52994 * 109.47421 * 157.59972 * 13 12 2 17 17 N 1.46497 * 109.47323 * 302.71843 * 16 13 12 18 18 C 1.46760 * 124.35031 * 275.87825 * 17 16 13 19 19 C 1.54479 * 105.47557 * 197.01343 * 18 17 16 20 20 C 1.54625 * 101.76681 * 334.58616 * 19 18 17 21 21 C 1.34421 * 124.35052 * 95.57733 * 17 16 13 22 22 O 1.21277 * 124.94323 * 359.56963 * 21 17 16 23 23 H 1.08999 * 109.46726 * 299.99749 * 1 2 3 24 24 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47192 * 59.99573 * 1 2 3 26 26 H 0.97005 * 119.99571 * 180.02562 * 7 6 4 27 27 H 1.00905 * 111.00337 * 38.95166 * 12 2 1 28 28 H 1.08996 * 109.46914 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.46871 * 299.99612 * 15 13 12 30 30 H 1.09000 * 109.47308 * 59.99589 * 15 13 12 31 31 H 1.09002 * 109.46935 * 62.71527 * 16 13 12 32 32 H 1.09001 * 109.47293 * 182.71425 * 16 13 12 33 33 H 1.08999 * 110.24482 * 316.01438 * 18 17 16 34 34 H 1.09002 * 110.24639 * 77.92870 * 18 17 16 35 35 H 1.09009 * 110.96937 * 92.70447 * 19 18 17 36 36 H 1.09003 * 110.97326 * 216.46061 * 19 18 17 37 37 H 1.08995 * 110.48721 * 143.47751 * 20 19 18 38 38 H 1.09004 * 110.48102 * 265.98889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4829 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0082 9 1 1.8278 -2.5196 -4.0084 10 1 1.8266 -0.4196 -5.2206 11 1 3.8073 -1.1187 -4.0079 12 7 2.0198 -0.6925 1.1993 13 6 2.0826 0.2224 2.3469 14 1 1.2318 0.9032 2.3158 15 6 3.3823 1.0274 2.2866 16 6 2.0426 -0.5850 3.6458 17 7 0.8291 -1.4052 3.6737 18 6 -0.4846 -0.9256 4.1186 19 6 -1.3182 -2.1978 4.3887 20 6 -0.6295 -3.2282 3.4641 21 6 0.7745 -2.6922 3.2896 22 8 1.7145 -3.3315 2.8670 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 0.7087 1.1616 -3.4843 27 1 1.4497 -1.4980 1.4099 28 1 3.4292 1.7060 3.1383 29 1 4.2331 0.3467 2.3176 30 1 3.4109 1.6027 1.3612 31 1 2.9190 -1.2309 3.6992 32 1 2.0406 0.0959 4.4970 33 1 -0.3827 -0.3403 5.0325 34 1 -0.9517 -0.3259 3.3374 35 1 -1.2424 -2.4994 5.4335 36 1 -2.3593 -2.0504 4.1015 37 1 -0.6099 -4.2107 3.9356 38 1 -1.1393 -3.2778 2.5019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = -59.847248 kcal Electronic energy + Delta-G solvation = -18275.522394 eV Core-core repulsion = 15537.705964 eV Total energy + Delta-G solvation = -2737.816430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43411 -38.41850 -37.30479 -35.44268 -33.40144 -31.83627 -28.79552 -28.38650 -27.31814 -27.06581 -22.97977 -22.58920 -21.20838 -20.34772 -18.49468 -17.63314 -17.51246 -16.93731 -16.70623 -15.91686 -15.50495 -14.85148 -14.59230 -14.47412 -14.35571 -13.90454 -13.61749 -13.38180 -13.11053 -13.03411 -12.97544 -12.80952 -12.60550 -12.39536 -12.28140 -12.21890 -11.92517 -11.86996 -11.62076 -11.06957 -10.77582 -10.51044 -9.64559 -8.92337 -8.13149 -6.23780 1.37959 1.40106 1.48393 1.62229 2.11677 2.41012 3.14066 3.44929 3.59676 3.69907 3.98790 4.07910 4.25501 4.29065 4.40564 4.53175 4.67439 4.69076 4.71975 4.79535 4.82096 4.89145 4.92713 4.97926 5.09197 5.19353 5.23715 5.36007 5.42570 5.64674 5.67825 5.79707 6.19873 6.27208 6.66615 6.85165 6.91777 7.22680 7.46131 8.91945 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.007079 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.049413 B = 3954.510605 C = 4242.250919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.219 3.781 3 H 0.007 0.993 4 C -0.521 4.521 5 H 0.041 0.959 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.275 1.275 12 N -0.688 5.688 13 C 0.062 3.938 14 H 0.032 0.968 15 C -0.129 4.129 16 C 0.130 3.870 17 N -0.621 5.621 18 C 0.093 3.907 19 C -0.114 4.114 20 C -0.155 4.155 21 C 0.494 3.506 22 O -0.577 6.577 23 H 0.027 0.973 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.262 0.738 27 H 0.326 0.674 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -1.365 16.915 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.110 3.890 3 H 0.025 0.975 4 C -0.559 4.559 5 H 0.059 0.941 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.321 5.321 13 C -0.049 4.049 14 H 0.050 0.950 15 C -0.187 4.187 16 C 0.007 3.993 17 N -0.354 5.354 18 C -0.029 4.029 19 C -0.151 4.151 20 C -0.195 4.195 21 C 0.284 3.716 22 O -0.456 6.456 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.214 -1.443 16.419 17.287 hybrid contribution -0.442 -0.169 -1.199 1.289 sum -5.656 -1.612 15.220 16.317 Atomic orbital electron populations 1.22160 1.00048 0.98353 1.00094 1.18917 0.89904 0.92714 0.87456 0.97534 1.21420 1.30584 1.12276 0.91669 0.94062 1.25654 0.95420 0.95884 1.01585 1.69977 1.37831 1.23973 1.24092 0.85635 0.78678 0.78649 0.78780 1.20085 1.20153 1.20079 1.60714 1.58309 1.09318 1.03762 1.21974 0.97639 0.94184 0.91126 0.95038 1.21672 0.96505 0.99193 1.01321 1.21626 0.86452 0.94008 0.97174 1.48495 1.10991 1.11533 1.64383 1.22375 0.81387 0.98189 1.00970 1.22617 1.00165 0.91626 1.00717 1.22400 0.91654 1.02091 1.03370 1.21775 0.91769 0.82473 0.75631 1.90734 1.44107 1.63451 1.47332 0.95390 0.96208 0.91780 0.92841 0.85529 0.89508 0.92959 0.94944 0.91173 0.86397 0.87461 0.92062 0.87846 0.87025 0.86802 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.36 8.92 71.98 0.64 -6.72 16 2 C 0.22 11.79 2.39 44.17 0.11 11.89 16 3 H 0.01 0.40 6.92 -2.39 -0.02 0.38 16 4 C -0.52 -31.34 8.84 25.60 0.23 -31.12 16 5 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 N -0.69 -32.40 6.03 -473.31 -2.86 -35.26 16 13 C 0.06 2.23 2.76 44.91 0.12 2.36 16 14 H 0.03 1.15 7.12 -2.38 -0.02 1.14 16 15 C -0.13 -4.32 9.37 71.98 0.67 -3.65 16 16 C 0.13 3.69 5.65 86.38 0.49 4.18 16 17 N -0.62 -16.90 2.59 -818.00 -2.12 -19.02 16 18 C 0.09 1.65 7.35 86.83 0.64 2.29 16 19 C -0.11 -1.50 7.18 31.65 0.23 -1.27 16 20 C -0.16 -3.31 6.86 30.59 0.21 -3.10 16 21 C 0.49 15.97 6.50 87.90 0.57 16.54 16 22 O -0.58 -24.87 16.84 -3.02 -0.05 -24.93 16 23 H 0.03 1.20 7.40 -2.39 -0.02 1.18 16 24 H 0.02 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 26 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 27 H 0.33 15.52 5.22 -89.69 -0.47 15.05 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.03 1.26 7.24 -2.39 -0.02 1.24 16 31 H 0.07 2.29 7.81 -2.39 -0.02 2.27 16 32 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -74.42 304.08 2.16 -72.25 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.56 Total: 20.06 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.36 Total: -7.39 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -4.73 Total: -108.43 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.42 2.16 -72.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.404 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds