Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46769 * 2 1 4 4 C 1.53001 * 109.46698 * 239.99998 * 2 1 3 5 5 N 1.46499 * 109.46864 * 184.99571 * 4 2 1 6 6 C 1.46764 * 124.34773 * 90.00383 * 5 4 2 7 7 C 1.54479 * 105.47031 * 197.01442 * 6 5 4 8 8 C 1.54627 * 101.76699 * 334.58191 * 7 6 5 9 9 C 1.34423 * 124.34863 * 269.70126 * 5 4 2 10 10 O 1.21282 * 124.94563 * 359.57456 * 9 5 4 11 11 N 1.46901 * 109.47516 * 120.00317 * 2 1 3 12 12 C 1.46900 * 110.99433 * 274.05027 * 11 2 1 13 13 H 1.08997 * 109.47598 * 33.66647 * 12 11 2 14 14 C 1.53000 * 109.46940 * 153.67106 * 12 11 2 15 15 C 1.50699 * 109.46891 * 273.66581 * 12 11 2 16 16 H 1.08000 * 120.00448 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00050 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00049 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 120.00049 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47298 * 89.99515 * 19 17 15 21 21 H 1.48501 * 109.47178 * 209.99823 * 19 17 15 22 22 H 1.48503 * 109.46614 * 329.99643 * 19 17 15 23 23 H 1.08991 * 109.47861 * 64.79733 * 1 2 3 24 24 H 1.09006 * 109.47029 * 184.80322 * 1 2 3 25 25 H 1.09003 * 109.47026 * 304.79211 * 1 2 3 26 26 H 1.08999 * 109.47539 * 304.99786 * 4 2 1 27 27 H 1.09007 * 109.47055 * 65.00184 * 4 2 1 28 28 H 1.08990 * 110.24694 * 316.01633 * 6 5 4 29 29 H 1.09001 * 110.24308 * 77.92804 * 6 5 4 30 30 H 1.09000 * 110.97139 * 92.70737 * 7 6 5 31 31 H 1.08998 * 110.96853 * 216.46602 * 7 6 5 32 32 H 1.09001 * 110.48431 * 143.47831 * 8 7 6 33 33 H 1.08995 * 110.48675 * 265.98537 * 8 7 6 34 34 H 1.00903 * 111.00007 * 38.00172 * 11 2 1 35 35 H 1.09001 * 109.47244 * 57.17048 * 14 12 11 36 36 H 1.08995 * 109.47279 * 177.17182 * 14 12 11 37 37 H 1.09001 * 109.47023 * 297.17726 * 14 12 11 38 38 H 0.96999 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.4999 -0.8263 -1.1907 6 6 4.2257 -1.9487 -0.5845 7 6 5.6664 -1.4367 -0.3638 8 6 5.7778 -0.3339 -1.4418 9 6 4.3469 0.0901 -1.6904 10 8 4.0127 1.1097 -2.2557 11 7 2.0197 -0.6925 1.1994 12 6 2.1039 0.2279 2.3411 13 1 1.3024 0.9636 2.2747 14 6 1.9647 -0.5618 3.6442 15 6 3.4357 0.9329 2.3209 16 1 4.1481 0.7189 1.5380 17 6 3.7446 1.8511 3.3020 18 7 4.9067 2.4667 3.2840 19 14 2.5127 2.2207 4.6566 20 1 2.7393 1.2973 5.7973 21 1 2.6851 3.6232 5.1133 22 1 1.1343 2.0356 4.1361 23 1 -0.3634 0.4375 -0.9297 24 1 -0.3633 -1.0241 0.0861 25 1 -0.3633 0.5864 0.8440 26 1 1.6053 -1.7198 -1.2952 27 1 1.7515 -0.1583 -2.1370 28 1 3.7719 -2.2208 0.3683 29 1 4.2275 -2.8050 -1.2590 30 1 5.7827 -1.0182 0.6360 31 1 6.3934 -2.2294 -0.5402 32 1 6.3679 0.5041 -1.0708 33 1 6.2187 -0.7354 -2.3542 34 1 1.4405 -1.4890 1.4189 35 1 2.7361 -1.3307 3.6872 36 1 2.0773 0.1136 4.4922 37 1 0.9816 -1.0311 3.6813 38 1 5.1241 3.1124 3.9744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -29.439854 kcal Electronic energy + Delta-G solvation = -18521.989421 eV Core-core repulsion = 15785.491555 eV Total energy + Delta-G solvation = -2736.497866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76368 -37.00410 -35.62448 -33.64759 -31.80591 -30.63382 -27.53900 -26.94088 -25.79694 -25.05695 -21.40084 -20.78137 -20.10840 -18.75665 -16.64956 -16.19340 -16.00318 -15.19929 -14.71876 -14.30820 -13.87846 -13.46651 -13.26380 -13.07496 -12.74478 -12.53885 -12.43885 -12.19448 -12.04798 -11.76264 -11.48151 -11.08239 -10.92153 -10.59599 -10.54943 -10.42250 -10.30142 -10.29053 -9.55117 -9.22782 -9.17178 -8.51281 -8.11421 -7.32089 -6.00552 -3.96510 3.19573 3.25716 3.36133 3.39248 3.65529 4.42831 4.85010 4.99815 5.04136 5.29912 5.31792 5.38643 5.49399 5.60644 5.73193 5.74681 5.81599 6.01061 6.06484 6.14212 6.20679 6.28522 6.33732 6.36830 6.44132 6.48305 6.63337 6.68131 6.81381 7.09698 7.20655 7.72916 7.75927 7.96016 8.26918 8.78009 8.81166 9.12445 9.62875 11.12956 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.009557 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.062861 B = 2928.998688 C = 3480.454091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.089 0.911 4 C 0.143 3.857 5 N -0.592 5.592 6 C 0.112 3.888 7 C -0.130 4.130 8 C -0.153 4.153 9 C 0.521 3.479 10 O -0.548 6.548 11 N -0.662 5.662 12 C 0.183 3.817 13 H -0.001 1.001 14 C -0.154 4.154 15 C -0.489 4.489 16 H 0.081 0.919 17 C 0.065 3.935 18 N -0.901 5.901 19 Si 0.883 3.117 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.315 0.685 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.024 0.976 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -10.778 -6.389 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.045 4.045 3 H 0.107 0.893 4 C 0.020 3.980 5 N -0.324 5.324 6 C -0.011 4.011 7 C -0.167 4.167 8 C -0.193 4.193 9 C 0.309 3.691 10 O -0.426 6.426 11 N -0.291 5.291 12 C 0.075 3.925 13 H 0.017 0.983 14 C -0.212 4.212 15 C -0.527 4.527 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.540 5.540 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.197 1.197 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.331 -10.036 -6.758 12.550 hybrid contribution -1.603 0.424 1.296 2.105 sum -4.934 -9.613 -5.462 12.107 Atomic orbital electron populations 1.22453 0.97972 1.01247 1.01962 1.21974 0.91281 0.99923 0.91281 0.89290 1.21325 0.79023 1.00118 0.97542 1.47812 1.05493 1.22085 1.57023 1.22000 0.92125 0.87907 0.99110 1.22557 0.95888 0.97734 1.00563 1.22250 0.95571 1.01106 1.00368 1.20795 0.88578 0.82479 0.77270 1.90662 1.82319 1.25264 1.44361 1.60579 1.54268 1.09856 1.04433 1.19609 0.97425 0.89964 0.85522 0.98348 1.22311 0.98671 1.00501 0.99705 1.20980 0.99726 1.20454 1.11556 0.90057 1.24959 0.94966 0.95899 0.97752 1.69881 1.21502 1.27889 1.34692 0.86941 0.82442 0.76262 0.82885 1.20833 1.22640 1.19731 0.92626 0.93012 0.92578 0.91411 0.90799 0.88585 0.93029 0.88862 0.90439 0.88278 0.89106 0.86879 0.92189 0.93711 0.95701 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.17 37.16 0.34 -2.22 16 2 C 0.07 1.19 2.69 -67.71 -0.18 1.01 16 3 H 0.09 2.00 7.68 -51.93 -0.40 1.60 16 4 C 0.14 2.22 5.64 -4.04 -0.02 2.20 16 5 N -0.59 -9.96 2.75 -172.41 -0.47 -10.43 16 6 C 0.11 1.57 7.10 -3.12 -0.02 1.54 16 7 C -0.13 -1.82 7.18 -25.10 -0.18 -2.00 16 8 C -0.15 -2.37 6.86 -26.74 -0.18 -2.56 16 9 C 0.52 10.08 8.02 -10.86 -0.09 10.00 16 10 O -0.55 -12.76 17.59 5.56 0.10 -12.66 16 11 N -0.66 -12.28 4.52 -100.96 -0.46 -12.74 16 12 C 0.18 4.16 2.01 -68.86 -0.14 4.02 16 13 H 0.00 -0.02 6.28 -51.93 -0.33 -0.35 16 14 C -0.15 -3.20 8.65 37.16 0.32 -2.88 16 15 C -0.49 -13.44 9.15 -34.44 -0.32 -13.75 16 16 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 17 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 19 Si 0.88 22.08 24.39 -169.99 -4.15 17.94 16 20 H -0.28 -6.81 6.85 56.52 0.39 -6.43 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 25 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.16 7.92 -51.92 -0.41 0.75 16 28 H 0.10 1.43 7.07 -51.93 -0.37 1.07 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.31 5.07 8.01 -39.29 -0.31 4.75 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.04 1.00 3.22 -51.93 -0.17 0.83 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -32.53 301.05 -6.44 -38.97 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.21 Total: 4.10 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.57 Total: -2.88 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.16 Total: -50.01 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.10 Total: -12.66 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.15 Total: 17.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.53 -6.44 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.535 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds