Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46769 * 2 1 4 4 C 1.53001 * 109.46698 * 239.99998 * 2 1 3 5 5 N 1.46499 * 109.46864 * 184.99571 * 4 2 1 6 6 C 1.46764 * 124.34773 * 90.00383 * 5 4 2 7 7 C 1.54479 * 105.47031 * 197.01442 * 6 5 4 8 8 C 1.54627 * 101.76699 * 334.58191 * 7 6 5 9 9 C 1.34423 * 124.34863 * 269.70126 * 5 4 2 10 10 O 1.21282 * 124.94563 * 359.57456 * 9 5 4 11 11 N 1.46901 * 109.47516 * 120.00317 * 2 1 3 12 12 C 1.46900 * 110.99433 * 274.05027 * 11 2 1 13 13 H 1.08997 * 109.47598 * 33.66647 * 12 11 2 14 14 C 1.53000 * 109.46940 * 153.67106 * 12 11 2 15 15 C 1.50699 * 109.46891 * 273.66581 * 12 11 2 16 16 H 1.08000 * 120.00448 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00050 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00049 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 120.00049 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47298 * 89.99515 * 19 17 15 21 21 H 1.48501 * 109.47178 * 209.99823 * 19 17 15 22 22 H 1.48503 * 109.46614 * 329.99643 * 19 17 15 23 23 H 1.08991 * 109.47861 * 64.79733 * 1 2 3 24 24 H 1.09006 * 109.47029 * 184.80322 * 1 2 3 25 25 H 1.09003 * 109.47026 * 304.79211 * 1 2 3 26 26 H 1.08999 * 109.47539 * 304.99786 * 4 2 1 27 27 H 1.09007 * 109.47055 * 65.00184 * 4 2 1 28 28 H 1.08990 * 110.24694 * 316.01633 * 6 5 4 29 29 H 1.09001 * 110.24308 * 77.92804 * 6 5 4 30 30 H 1.09000 * 110.97139 * 92.70737 * 7 6 5 31 31 H 1.08998 * 110.96853 * 216.46602 * 7 6 5 32 32 H 1.09001 * 110.48431 * 143.47831 * 8 7 6 33 33 H 1.08995 * 110.48675 * 265.98537 * 8 7 6 34 34 H 1.00903 * 111.00007 * 38.00172 * 11 2 1 35 35 H 1.09001 * 109.47244 * 57.17048 * 14 12 11 36 36 H 1.08995 * 109.47279 * 177.17182 * 14 12 11 37 37 H 1.09001 * 109.47023 * 297.17726 * 14 12 11 38 38 H 0.96999 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.4999 -0.8263 -1.1907 6 6 4.2257 -1.9487 -0.5845 7 6 5.6664 -1.4367 -0.3638 8 6 5.7778 -0.3339 -1.4418 9 6 4.3469 0.0901 -1.6904 10 8 4.0127 1.1097 -2.2557 11 7 2.0197 -0.6925 1.1994 12 6 2.1039 0.2279 2.3411 13 1 1.3024 0.9636 2.2747 14 6 1.9647 -0.5618 3.6442 15 6 3.4357 0.9329 2.3209 16 1 4.1481 0.7189 1.5380 17 6 3.7446 1.8511 3.3020 18 7 4.9067 2.4667 3.2840 19 14 2.5127 2.2207 4.6566 20 1 2.7393 1.2973 5.7973 21 1 2.6851 3.6232 5.1133 22 1 1.1343 2.0356 4.1361 23 1 -0.3634 0.4375 -0.9297 24 1 -0.3633 -1.0241 0.0861 25 1 -0.3633 0.5864 0.8440 26 1 1.6053 -1.7198 -1.2952 27 1 1.7515 -0.1583 -2.1370 28 1 3.7719 -2.2208 0.3683 29 1 4.2275 -2.8050 -1.2590 30 1 5.7827 -1.0182 0.6360 31 1 6.3934 -2.2294 -0.5402 32 1 6.3679 0.5041 -1.0708 33 1 6.2187 -0.7354 -2.3542 34 1 1.4405 -1.4890 1.4189 35 1 2.7361 -1.3307 3.6872 36 1 2.0773 0.1136 4.4922 37 1 0.9816 -1.0311 3.6813 38 1 5.1241 3.1124 3.9744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -53.695507 kcal Electronic energy + Delta-G solvation = -18523.041225 eV Core-core repulsion = 15785.491555 eV Total energy + Delta-G solvation = -2737.549670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16528 -38.59180 -37.13311 -35.37308 -33.65754 -32.13033 -29.06437 -28.23499 -27.15298 -27.00679 -22.68746 -22.30793 -21.84879 -20.18087 -18.72334 -17.63121 -17.34479 -16.93220 -16.34679 -15.95566 -15.40874 -14.96730 -14.74436 -14.59023 -14.50081 -14.14003 -13.95090 -13.62490 -13.27527 -13.10856 -12.82143 -12.71446 -12.45047 -12.28015 -12.11800 -12.09181 -11.85623 -11.67117 -11.40902 -11.26505 -10.69874 -10.69532 -9.54408 -8.86383 -8.23440 -6.22945 1.25900 1.32597 1.41355 1.69773 2.32168 2.37313 3.10527 3.45953 3.62167 3.81721 4.05622 4.18481 4.23068 4.37941 4.40840 4.55755 4.60402 4.62559 4.68919 4.77418 4.82482 4.86925 4.95541 4.99902 5.12986 5.17911 5.18899 5.23801 5.44899 5.45619 5.72098 5.85581 6.11402 6.37418 6.53442 6.85078 7.04820 7.34391 7.40520 8.93990 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.009557 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.062861 B = 2928.998688 C = 3480.454091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.026 0.974 4 C 0.141 3.859 5 N -0.591 5.591 6 C 0.110 3.890 7 C -0.121 4.121 8 C -0.149 4.149 9 C 0.498 3.502 10 O -0.603 6.603 11 N -0.658 5.658 12 C 0.188 3.812 13 H -0.016 1.016 14 C -0.148 4.148 15 C -0.482 4.482 16 H 0.036 0.964 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.948 3.052 20 H -0.263 1.263 21 H -0.307 1.307 22 H -0.256 1.256 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.338 0.662 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -14.035 -6.186 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.042 4.042 3 H 0.044 0.956 4 C 0.019 3.981 5 N -0.321 5.321 6 C -0.011 4.011 7 C -0.159 4.159 8 C -0.189 4.189 9 C 0.287 3.713 10 O -0.486 6.486 11 N -0.289 5.289 12 C 0.079 3.921 13 H 0.002 0.998 14 C -0.206 4.206 15 C -0.521 4.521 16 H 0.054 0.946 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.777 3.223 20 H -0.189 1.189 21 H -0.236 1.236 22 H -0.180 1.180 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.366 -13.370 -6.542 15.822 hybrid contribution -0.946 1.401 1.133 2.035 sum -6.311 -11.969 -5.408 14.572 Atomic orbital electron populations 1.22336 0.94860 1.03305 1.02076 1.21868 0.93721 0.96738 0.91850 0.95564 1.21456 0.78537 1.02138 0.95993 1.48059 1.06144 1.22150 1.55757 1.22235 0.91150 0.87994 0.99755 1.22533 0.97627 0.98124 0.97610 1.22281 0.93142 1.00999 1.02485 1.21549 0.90619 0.82185 0.76919 1.90612 1.83446 1.27531 1.47036 1.60355 1.55568 1.09742 1.03270 1.19365 0.93770 0.90573 0.88416 0.99807 1.22170 1.01277 1.00006 0.97139 1.21262 1.00968 1.20353 1.09546 0.94602 1.25813 0.96810 0.96040 1.00729 1.70061 1.24032 1.29340 1.36087 0.85878 0.80533 0.75722 0.80186 1.18852 1.23595 1.18005 0.91344 0.89508 0.94066 0.86914 0.91354 0.89205 0.88492 0.93036 0.85971 0.90591 0.85364 0.84305 0.91767 0.95185 0.91579 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 9.17 71.98 0.66 -3.73 16 2 C 0.07 2.42 2.69 44.92 0.12 2.54 16 3 H 0.03 1.23 7.68 -2.39 -0.02 1.21 16 4 C 0.14 4.16 5.64 86.38 0.49 4.64 16 5 N -0.59 -19.41 2.75 -817.98 -2.25 -21.66 16 6 C 0.11 2.82 7.10 86.83 0.62 3.43 16 7 C -0.12 -3.29 7.18 31.65 0.23 -3.06 16 8 C -0.15 -4.67 6.86 30.59 0.21 -4.46 16 9 C 0.50 19.88 8.02 87.90 0.71 20.58 16 10 O -0.60 -29.78 17.59 -3.03 -0.05 -29.83 16 11 N -0.66 -23.37 4.52 -473.32 -2.14 -25.51 16 12 C 0.19 8.39 2.01 44.17 0.09 8.48 16 13 H -0.02 -0.74 6.28 -2.39 -0.02 -0.76 16 14 C -0.15 -5.71 8.65 71.98 0.62 -5.09 16 15 C -0.48 -27.47 9.15 25.60 0.23 -27.24 16 16 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 17 C 0.00 0.11 5.45 84.65 0.46 0.57 16 18 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 19 Si 0.95 46.02 24.39 68.60 1.67 47.69 16 20 H -0.26 -11.88 6.85 99.48 0.68 -11.20 16 21 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 22 H -0.26 -11.60 6.53 99.48 0.65 -10.95 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.09 1.71 8.04 -2.38 -0.02 1.69 16 25 H 0.04 1.21 7.57 -2.39 -0.02 1.19 16 26 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 2.10 7.92 -2.38 -0.02 2.09 16 28 H 0.09 2.45 7.07 -2.39 -0.02 2.43 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.34 9.53 8.01 -89.69 -0.72 8.81 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 1.25 3.22 -2.39 -0.01 1.24 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -77.57 301.05 2.20 -75.36 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.24 Total: 18.28 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.43 Total: -3.33 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.09 Total: -108.17 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -77.57 2.20 -75.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds