Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47337 * 2 1 4 4 C 1.46500 * 120.00262 * 270.00085 * 3 2 1 5 5 C 1.50698 * 109.47143 * 270.00071 * 4 3 2 6 6 H 1.08001 * 120.00358 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99979 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00107 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47195 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47224 * 210.00035 * 9 7 5 12 12 H 1.48499 * 109.47125 * 330.00322 * 9 7 5 13 13 C 1.34777 * 119.99786 * 89.99856 * 3 2 1 14 14 O 1.21284 * 120.00069 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00049 * 0.02562 * 13 3 2 16 16 H 1.09002 * 109.46959 * 319.99772 * 15 13 3 17 17 N 1.46899 * 109.47244 * 199.99894 * 15 13 3 18 18 C 1.52997 * 109.47078 * 79.99684 * 15 13 3 19 19 C 1.53004 * 109.47236 * 184.99974 * 18 15 13 20 20 C 1.53001 * 117.49960 * 243.62444 * 19 18 15 21 21 C 1.53001 * 117.50024 * 175.00153 * 19 18 15 22 22 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47126 * 299.99780 * 1 2 3 24 24 H 1.09006 * 109.46761 * 60.00153 * 1 2 3 25 25 H 1.09005 * 109.47099 * 240.00336 * 2 1 3 26 26 H 1.09000 * 109.47116 * 120.00433 * 2 1 3 27 27 H 1.09001 * 109.46924 * 30.00039 * 4 3 2 28 28 H 1.09002 * 109.47079 * 149.99873 * 4 3 2 29 29 H 0.97006 * 120.00243 * 179.97438 * 8 7 5 30 30 H 1.00893 * 111.00096 * 176.04982 * 17 15 13 31 31 H 1.00903 * 110.99833 * 299.99603 * 17 15 13 32 32 H 1.09001 * 109.47630 * 305.00104 * 18 15 13 33 33 H 1.09004 * 109.47346 * 65.00234 * 18 15 13 34 34 H 1.08999 * 115.54757 * 29.32655 * 19 18 15 35 35 H 1.08998 * 117.50038 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.49770 * 145.01902 * 20 19 18 37 37 H 1.08996 * 117.49649 * 214.97891 * 21 19 18 38 38 H 1.09000 * 117.49567 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 5.3917 2.1842 -3.2568 9 14 3.0132 3.4361 -3.9286 10 1 3.1159 4.8563 -3.5067 11 1 3.4068 3.3139 -5.3553 12 1 1.6136 2.9695 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3058 2.4723 16 1 1.0819 0.7117 2.3934 17 7 1.8397 2.2954 3.5472 18 6 3.1747 0.3877 2.7884 19 6 2.8663 -0.4260 4.0469 20 6 3.7560 -0.1987 5.2707 21 6 3.8804 -1.4930 4.4643 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.5817 1.6877 -2.0283 28 1 2.0956 3.1410 -1.1383 29 1 5.7178 2.5747 -4.0827 30 1 1.6069 1.8473 4.4207 31 1 2.6713 2.8592 3.6404 32 1 3.3436 -0.2888 1.9506 33 1 4.0679 0.9898 2.9549 34 1 1.8117 -0.6375 4.2232 35 1 4.5612 0.5302 5.1792 36 1 3.2867 -0.2606 6.2525 37 1 3.4929 -2.4063 4.9156 38 1 4.7669 -1.6155 3.8421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308897961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = -15.873227 kcal Electronic energy + Delta-G solvation = -17905.993612 eV Core-core repulsion = 15170.084039 eV Total energy + Delta-G solvation = -2735.909573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58548 -37.65415 -35.41445 -34.26044 -32.62209 -30.30595 -28.91177 -27.62036 -24.45538 -22.92911 -22.50529 -21.65134 -20.48901 -18.32410 -17.05341 -16.86893 -15.89176 -15.65201 -14.68123 -14.40505 -14.23190 -14.04165 -13.74815 -13.39115 -13.08685 -12.72035 -12.39227 -12.12308 -11.89739 -11.65796 -11.62634 -11.48099 -11.14669 -10.90880 -10.70252 -10.49650 -10.46994 -10.13174 -10.03667 -9.51907 -9.01256 -8.57057 -8.43752 -7.66894 -6.07294 -4.05646 3.30958 3.34858 3.36973 3.39326 3.64987 3.79696 4.41560 4.54275 4.74017 4.76186 4.92254 4.99373 5.17264 5.25223 5.27080 5.37862 5.49316 5.52110 5.61620 5.69981 5.75984 5.86566 5.89879 5.97897 6.03746 6.17805 6.25131 6.45047 6.73654 6.98006 7.22733 7.40406 7.61412 7.64363 8.31575 8.49191 8.94798 9.05416 9.53638 11.06103 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.006430 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.593009 B = 4353.834929 C = 4528.299136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.216 3.784 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.515 3.485 14 O -0.532 6.532 15 C 0.078 3.922 16 H 0.097 0.903 17 N -0.826 5.826 18 C -0.123 4.123 19 C -0.152 4.152 20 C -0.183 4.183 21 C -0.178 4.178 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.340 0.660 31 H 0.350 0.650 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -8.124 13.364 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.408 6.408 15 C -0.037 4.037 16 H 0.115 0.885 17 N -0.357 5.357 18 C -0.162 4.162 19 C -0.170 4.170 20 C -0.220 4.220 21 C -0.215 4.215 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.285 -7.154 12.747 16.802 hybrid contribution 0.403 -0.117 -0.243 0.485 sum -7.882 -7.272 12.505 16.473 Atomic orbital electron populations 1.22251 0.96797 1.01512 1.02364 1.21541 0.93478 0.84047 1.03187 1.47893 1.64327 1.13295 1.06924 1.19636 0.97213 0.93432 0.80183 1.21331 0.95352 1.32769 1.07068 0.90854 1.24856 0.94996 0.95814 0.97376 1.69900 1.15140 1.45112 1.23593 0.86847 0.81500 0.81640 0.79688 1.19909 1.21111 1.19057 1.20159 0.78178 0.86792 0.84776 1.90648 1.45157 1.18023 1.86992 1.21421 0.98348 0.92387 0.91532 0.88490 1.58583 1.44199 1.24798 1.08094 1.21993 0.98972 0.98413 0.96847 1.22321 0.96846 1.02178 0.95643 1.23067 1.02892 1.00367 0.95650 1.22952 1.01619 0.93093 1.03879 0.92037 0.92807 0.92218 0.89796 0.91099 0.95297 0.94633 0.92608 0.84703 0.83595 0.90039 0.90993 0.87662 0.88793 0.88912 0.88863 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.10 37.16 0.38 -1.84 16 2 C 0.10 1.59 5.68 -4.04 -0.02 1.57 16 3 N -0.59 -12.27 2.46 -175.06 -0.43 -12.70 16 4 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 5 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.52 10.69 6.92 -10.99 -0.08 10.61 16 14 O -0.53 -13.46 15.83 5.55 0.09 -13.37 16 15 C 0.08 1.17 2.32 -68.87 -0.16 1.01 16 16 H 0.10 1.28 6.12 -51.93 -0.32 0.96 16 17 N -0.83 -11.54 8.95 -5.66 -0.05 -11.59 16 18 C -0.12 -1.63 4.79 -26.73 -0.13 -1.76 16 19 C -0.15 -1.53 4.92 -90.62 -0.45 -1.97 16 20 C -0.18 -1.68 10.18 -26.73 -0.27 -1.95 16 21 C -0.18 -1.68 10.25 -26.73 -0.27 -1.96 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.68 7.16 -51.93 -0.37 0.31 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 26 H 0.07 0.95 4.83 -51.93 -0.25 0.70 16 27 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 28 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.34 3.68 8.30 -39.30 -0.33 3.35 16 31 H 0.35 5.22 8.58 -39.29 -0.34 4.88 16 32 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 33 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 34 H 0.11 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -33.66 308.75 -7.13 -40.79 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.03 Total: 6.64 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.47 Total: -4.50 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.29 Total: -51.41 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.66 -7.13 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308897961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.921 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds