Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47337 * 2 1 4 4 C 1.46500 * 120.00262 * 270.00085 * 3 2 1 5 5 C 1.50698 * 109.47143 * 270.00071 * 4 3 2 6 6 H 1.08001 * 120.00358 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99979 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00107 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47195 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47224 * 210.00035 * 9 7 5 12 12 H 1.48499 * 109.47125 * 330.00322 * 9 7 5 13 13 C 1.34777 * 119.99786 * 89.99856 * 3 2 1 14 14 O 1.21284 * 120.00069 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00049 * 0.02562 * 13 3 2 16 16 H 1.09002 * 109.46959 * 319.99772 * 15 13 3 17 17 N 1.46899 * 109.47244 * 199.99894 * 15 13 3 18 18 C 1.52997 * 109.47078 * 79.99684 * 15 13 3 19 19 C 1.53004 * 109.47236 * 184.99974 * 18 15 13 20 20 C 1.53001 * 117.49960 * 243.62444 * 19 18 15 21 21 C 1.53001 * 117.50024 * 175.00153 * 19 18 15 22 22 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47126 * 299.99780 * 1 2 3 24 24 H 1.09006 * 109.46761 * 60.00153 * 1 2 3 25 25 H 1.09005 * 109.47099 * 240.00336 * 2 1 3 26 26 H 1.09000 * 109.47116 * 120.00433 * 2 1 3 27 27 H 1.09001 * 109.46924 * 30.00039 * 4 3 2 28 28 H 1.09002 * 109.47079 * 149.99873 * 4 3 2 29 29 H 0.97006 * 120.00243 * 179.97438 * 8 7 5 30 30 H 1.00893 * 111.00096 * 176.04982 * 17 15 13 31 31 H 1.00903 * 110.99833 * 299.99603 * 17 15 13 32 32 H 1.09001 * 109.47630 * 305.00104 * 18 15 13 33 33 H 1.09004 * 109.47346 * 65.00234 * 18 15 13 34 34 H 1.08999 * 115.54757 * 29.32655 * 19 18 15 35 35 H 1.08998 * 117.50038 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.49770 * 145.01902 * 20 19 18 37 37 H 1.08996 * 117.49649 * 214.97891 * 21 19 18 38 38 H 1.09000 * 117.49567 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 5.3917 2.1842 -3.2568 9 14 3.0132 3.4361 -3.9286 10 1 3.1159 4.8563 -3.5067 11 1 3.4068 3.3139 -5.3553 12 1 1.6136 2.9695 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3058 2.4723 16 1 1.0819 0.7117 2.3934 17 7 1.8397 2.2954 3.5472 18 6 3.1747 0.3877 2.7884 19 6 2.8663 -0.4260 4.0469 20 6 3.7560 -0.1987 5.2707 21 6 3.8804 -1.4930 4.4643 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.5817 1.6877 -2.0283 28 1 2.0956 3.1410 -1.1383 29 1 5.7178 2.5747 -4.0827 30 1 1.6069 1.8473 4.4207 31 1 2.6713 2.8592 3.6404 32 1 3.3436 -0.2888 1.9506 33 1 4.0679 0.9898 2.9549 34 1 1.8117 -0.6375 4.2232 35 1 4.5612 0.5302 5.1792 36 1 3.2867 -0.2606 6.2525 37 1 3.4929 -2.4063 4.9156 38 1 4.7669 -1.6155 3.8421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308897961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = -40.486434 kcal Electronic energy + Delta-G solvation = -17907.060921 eV Core-core repulsion = 15170.084039 eV Total energy + Delta-G solvation = -2736.976882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08853 -38.64962 -37.05024 -35.50631 -34.73558 -31.87631 -30.21298 -29.25221 -25.96900 -24.40545 -23.26115 -23.22383 -21.41219 -19.85523 -19.10338 -18.44185 -17.28624 -16.81858 -16.30843 -15.99333 -15.52451 -15.24947 -15.02415 -14.69937 -14.56847 -14.25170 -13.96303 -13.72018 -13.31165 -13.23533 -12.74467 -12.59821 -12.43193 -12.37353 -12.21043 -12.04815 -11.88817 -11.75383 -11.29277 -10.89531 -10.84616 -10.57912 -9.63925 -9.40208 -8.35680 -6.40429 1.30931 1.35239 1.43641 1.77703 2.26357 2.29719 2.86019 2.98695 3.49878 3.68276 3.79012 3.93643 4.04609 4.11063 4.16507 4.30213 4.40106 4.57564 4.59531 4.74522 4.79992 4.83768 4.87127 4.91527 4.99618 5.01760 5.05054 5.27329 5.32796 5.39506 5.45786 5.65339 6.06080 6.23385 6.59842 6.61465 6.73070 7.20513 7.43828 8.81216 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.006430 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.593009 B = 4353.834929 C = 4528.299136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.599 5.599 4 C 0.225 3.775 5 C -0.534 4.534 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.239 1.239 13 C 0.501 3.499 14 O -0.589 6.589 15 C 0.095 3.905 16 H 0.126 0.874 17 N -0.829 5.829 18 C -0.116 4.116 19 C -0.151 4.151 20 C -0.178 4.178 21 C -0.178 4.178 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.015 0.985 29 H 0.268 0.732 30 H 0.361 0.639 31 H 0.343 0.657 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -9.376 14.430 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.330 5.330 4 C 0.102 3.898 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.162 1.162 13 C 0.290 3.710 14 O -0.469 6.469 15 C -0.020 4.020 16 H 0.144 0.856 17 N -0.362 5.362 18 C -0.155 4.155 19 C -0.169 4.169 20 C -0.215 4.215 21 C -0.215 4.215 22 H 0.115 0.885 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.985 -8.473 13.845 19.600 hybrid contribution 1.339 0.223 -0.524 1.455 sum -9.647 -8.250 13.322 18.401 Atomic orbital electron populations 1.22179 0.93897 1.03760 1.02124 1.21876 0.95761 0.81249 1.04000 1.48021 1.64149 1.15099 1.05692 1.19288 0.94869 0.92916 0.82729 1.21543 0.96982 1.32044 1.06690 0.95318 1.25836 0.96709 0.97156 0.98945 1.70047 1.17355 1.46599 1.24512 0.85729 0.80472 0.78983 0.77857 1.20310 1.19799 1.16241 1.21301 0.76727 0.86442 0.86570 1.90608 1.47643 1.20698 1.87987 1.21311 0.99978 0.92122 0.88554 0.85613 1.58546 1.43859 1.24786 1.08981 1.21879 0.97350 0.97903 0.98414 1.22220 0.98264 1.02153 0.94213 1.23129 1.02277 0.99829 0.96291 1.23025 1.00894 0.93959 1.03652 0.88489 0.92046 0.93467 0.90888 0.88548 0.93395 0.96736 0.92261 0.82319 0.84388 0.91208 0.93479 0.85302 0.90035 0.86708 0.86795 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.10 71.98 0.73 -2.93 16 2 C 0.09 2.78 5.68 86.38 0.49 3.27 16 3 N -0.60 -24.84 2.46 -826.15 -2.03 -26.87 16 4 C 0.22 11.28 4.23 85.63 0.36 11.65 16 5 C -0.53 -32.04 9.94 25.60 0.25 -31.78 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.94 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 13 C 0.50 21.00 6.92 87.66 0.61 21.60 16 14 O -0.59 -30.86 15.83 -3.04 -0.05 -30.90 16 15 C 0.10 2.70 2.32 44.17 0.10 2.81 16 16 H 0.13 2.86 6.12 -2.39 -0.01 2.85 16 17 N -0.83 -21.98 8.95 -171.81 -1.54 -23.52 16 18 C -0.12 -2.98 4.79 30.59 0.15 -2.84 16 19 C -0.15 -2.62 4.92 -10.79 -0.05 -2.67 16 20 C -0.18 -2.86 10.18 30.60 0.31 -2.55 16 21 C -0.18 -2.95 10.25 30.60 0.31 -2.64 16 22 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.31 7.16 -2.39 -0.02 1.30 16 24 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 26 H 0.10 2.36 4.83 -2.39 -0.01 2.35 16 27 H 0.05 2.22 7.13 -2.39 -0.02 2.20 16 28 H 0.01 0.79 6.85 -2.39 -0.02 0.78 16 29 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 30 H 0.36 6.81 8.30 -89.70 -0.74 6.07 16 31 H 0.34 10.19 8.58 -89.69 -0.77 9.42 16 32 H 0.07 1.95 6.43 -2.39 -0.02 1.93 16 33 H 0.05 1.44 7.88 -2.39 -0.02 1.42 16 34 H 0.13 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.08 1.52 8.03 -2.39 -0.02 1.50 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -77.15 308.75 1.79 -75.37 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.51 Total: 23.76 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 3.73 Total: -4.94 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -3.27 Total: -110.58 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -77.15 1.79 -75.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308897961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -77.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds