Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 120.00005 * 2 1 4 4 O 1.21283 * 120.00043 * 4.20193 * 3 2 1 5 5 C 1.50697 * 120.00014 * 184.19840 * 3 2 1 6 6 N 1.46902 * 110.53949 * 30.84515 * 5 3 2 7 7 C 1.46897 * 111.00165 * 60.69999 * 6 5 3 8 8 H 1.08999 * 109.47132 * 351.83501 * 7 6 5 9 9 C 1.52991 * 109.47394 * 111.83834 * 7 6 5 10 10 C 1.50700 * 109.47252 * 231.83953 * 7 6 5 11 11 H 1.08006 * 120.00130 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00469 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99547 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00319 * 179.97438 * 12 10 7 15 15 H 1.48494 * 109.47172 * 60.00090 * 14 12 10 16 16 H 1.48499 * 109.46896 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47025 * 299.99731 * 14 12 10 18 18 C 1.54265 * 110.48527 * 153.45372 * 5 3 2 19 19 C 1.53876 * 106.59492 * 95.07327 * 18 5 3 20 20 C 1.54258 * 106.60258 * 359.97438 * 19 18 5 21 21 C 1.54884 * 110.48872 * 268.23283 * 5 3 2 22 22 H 1.08994 * 109.47038 * 59.99768 * 1 2 3 23 23 H 1.08991 * 109.47104 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46643 * 299.99936 * 1 2 3 25 25 H 0.96994 * 120.00002 * 180.02562 * 2 1 3 26 26 H 1.00903 * 110.99589 * 296.74805 * 6 5 3 27 27 H 1.09004 * 109.47580 * 66.30174 * 9 7 6 28 28 H 1.08999 * 109.47811 * 186.30311 * 9 7 6 29 29 H 1.09006 * 109.47141 * 306.30029 * 9 7 6 30 30 H 0.96999 * 119.99994 * 180.02562 * 13 12 10 31 31 H 1.09000 * 110.03309 * 335.78642 * 18 5 3 32 32 H 1.08998 * 110.03216 * 214.35163 * 18 5 3 33 33 H 1.09002 * 110.03402 * 119.28691 * 19 18 5 34 34 H 1.09004 * 110.02669 * 240.71147 * 19 18 5 35 35 H 1.08999 * 110.49158 * 142.28999 * 20 19 18 36 36 H 1.08999 * 110.48803 * 264.93743 * 20 19 18 37 37 H 1.08997 * 110.75857 * 160.94885 * 21 5 3 38 38 H 1.09003 * 110.75851 * 37.57141 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5350 2.2161 0.0770 5 6 3.6429 1.1689 -0.0955 6 7 4.1112 0.0151 -0.8749 7 6 3.5795 0.0536 -2.2437 8 1 2.8427 0.8527 -2.3250 9 6 4.7223 0.3115 -3.2277 10 6 2.9269 -1.2659 -2.5665 11 1 2.9093 -2.0544 -1.8287 12 6 2.3533 -1.4669 -3.8040 13 7 2.3752 -0.5069 -4.7027 14 14 1.5450 -3.1027 -4.2043 15 1 0.4355 -3.3534 -3.2497 16 1 1.0075 -3.0637 -5.5881 17 1 2.5490 -4.1912 -4.0933 18 6 4.1422 2.4851 -0.7266 19 6 4.4917 3.4266 0.4393 20 6 4.1920 2.6500 1.7380 21 6 4.2759 1.1612 1.3180 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9500 -0.8400 -0.0004 26 1 3.8705 -0.8516 -0.4177 27 1 5.4014 -0.5411 -3.2275 28 1 4.3151 0.4514 -4.2290 29 1 5.2648 1.2081 -2.9276 30 1 1.9713 -0.6481 -5.5732 31 1 3.3570 2.9264 -1.3404 32 1 5.0285 2.2961 -1.3323 33 1 5.5475 3.6945 0.3993 34 1 3.8761 4.3248 0.3912 35 1 4.9403 2.8743 2.4981 36 1 3.1929 2.8882 2.1030 37 1 5.3133 0.8296 1.2749 38 1 3.6970 0.5353 1.9971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308905143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -45.825458 kcal Electronic energy + Delta-G solvation = -18802.388465 eV Core-core repulsion = 16065.180066 eV Total energy + Delta-G solvation = -2737.208399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01214 -36.79163 -35.13574 -33.76654 -32.15832 -29.35410 -28.20827 -26.40497 -25.87272 -24.92050 -21.59133 -20.53665 -19.77075 -18.76373 -17.16396 -16.23133 -15.57873 -15.10735 -14.79724 -14.60271 -14.27019 -13.48693 -13.22150 -12.98749 -12.46644 -12.14444 -11.86495 -11.71272 -11.52831 -11.16638 -11.08307 -10.98034 -10.85699 -10.66656 -10.57328 -10.46975 -10.12217 -9.99017 -9.78776 -9.43726 -8.90458 -8.50427 -8.48110 -7.43237 -6.08879 -4.17874 3.22034 3.25496 3.29314 3.29901 3.83468 4.31921 4.90796 5.01398 5.03906 5.23658 5.33713 5.52392 5.69648 5.81471 5.89799 5.91187 6.03330 6.06206 6.18678 6.21178 6.28650 6.40483 6.52163 6.70518 6.76840 6.87568 6.98285 7.15047 7.27147 7.41818 7.65892 7.88867 8.05717 8.07414 8.24177 8.51910 8.84506 8.91707 9.48185 10.96312 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.008984 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.278853 B = 3115.910310 C = 3621.033654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.721 5.721 3 C 0.504 3.496 4 O -0.556 6.556 5 C 0.098 3.902 6 N -0.671 5.671 7 C 0.210 3.790 8 H 0.019 0.981 9 C -0.121 4.121 10 C -0.531 4.531 11 H 0.055 0.945 12 C 0.069 3.931 13 N -0.882 5.882 14 Si 0.892 3.108 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.095 4.095 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.106 4.106 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.402 0.598 26 H 0.329 0.671 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 1.507 9.891 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.372 5.372 3 C 0.289 3.711 4 O -0.433 6.433 5 C 0.003 3.997 6 N -0.303 5.303 7 C 0.103 3.897 8 H 0.036 0.964 9 C -0.179 4.179 10 C -0.570 4.570 11 H 0.073 0.927 12 C -0.135 4.135 13 N -0.519 5.519 14 Si 0.720 3.280 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.144 4.144 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.237 0.763 26 H 0.148 0.852 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.698 2.596 9.539 10.030 hybrid contribution -1.358 -1.710 -0.365 2.214 sum 0.340 0.886 9.174 9.223 Atomic orbital electron populations 1.21372 0.80631 1.01560 1.01347 1.45683 1.07222 1.09181 1.75146 1.21627 0.91558 0.83364 0.74576 1.90588 1.70880 1.31662 1.50134 1.22098 0.87736 0.94935 0.94945 1.61037 1.62293 1.02361 1.04650 1.19171 0.91834 0.96394 0.82314 0.96371 1.21742 0.97581 0.96944 1.01636 1.21352 1.36981 0.99048 0.99630 0.92661 1.24889 0.95821 0.96488 0.96281 1.69899 1.44121 1.32080 1.05839 0.86674 0.79619 0.84238 0.77511 1.20430 1.21299 1.20218 1.22036 1.01713 0.92186 0.97429 1.22028 1.00330 0.98475 0.94486 1.22308 1.01347 0.94853 0.97421 1.22504 1.01525 0.96746 0.93617 0.92527 0.91287 0.93189 0.76296 0.85204 0.95139 0.90725 0.96964 0.92787 0.91505 0.89968 0.92229 0.92096 0.91970 0.91651 0.89565 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 10.71 59.85 0.64 2.21 16 2 N -0.72 -13.16 5.15 -67.08 -0.35 -13.50 16 3 C 0.50 10.13 5.13 -10.99 -0.06 10.07 16 4 O -0.56 -12.61 15.83 5.55 0.09 -12.52 16 5 C 0.10 1.80 0.70 -131.10 -0.09 1.71 16 6 N -0.67 -13.21 5.83 -93.75 -0.55 -13.75 16 7 C 0.21 4.99 1.55 -68.87 -0.11 4.88 16 8 H 0.02 0.50 6.38 -51.93 -0.33 0.17 16 9 C -0.12 -2.90 9.16 37.15 0.34 -2.56 16 10 C -0.53 -13.33 7.93 -34.44 -0.27 -13.61 16 11 H 0.06 1.32 7.32 -52.48 -0.38 0.93 16 12 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 13 N -0.88 -24.55 11.39 55.43 0.63 -23.91 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.10 -1.76 4.70 -25.61 -0.12 -1.88 16 19 C -0.12 -1.75 6.80 -25.62 -0.17 -1.92 16 20 C -0.12 -1.72 6.51 -25.06 -0.16 -1.88 16 21 C -0.11 -1.57 6.03 -24.73 -0.15 -1.72 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.40 6.89 6.79 -40.82 -0.28 6.62 16 26 H 0.33 6.12 6.50 -39.29 -0.26 5.87 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.97 6.26 -51.93 -0.33 1.65 16 29 H 0.01 0.26 6.45 -51.93 -0.34 -0.08 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.40 7.37 -51.93 -0.38 1.02 16 32 H 0.08 1.54 6.30 -51.93 -0.33 1.22 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -29.08 296.52 -6.95 -36.03 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.97 Total: 10.88 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.25 Total: -3.01 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.26 Total: -51.17 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.08 -6.95 -36.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308905143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.795 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds