Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 120.00005 * 2 1 4 4 O 1.21283 * 120.00043 * 4.20193 * 3 2 1 5 5 C 1.50697 * 120.00014 * 184.19840 * 3 2 1 6 6 N 1.46902 * 110.53949 * 30.84515 * 5 3 2 7 7 C 1.46897 * 111.00165 * 60.69999 * 6 5 3 8 8 H 1.08999 * 109.47132 * 351.83501 * 7 6 5 9 9 C 1.52991 * 109.47394 * 111.83834 * 7 6 5 10 10 C 1.50700 * 109.47252 * 231.83953 * 7 6 5 11 11 H 1.08006 * 120.00130 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00469 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99547 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00319 * 179.97438 * 12 10 7 15 15 H 1.48494 * 109.47172 * 60.00090 * 14 12 10 16 16 H 1.48499 * 109.46896 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47025 * 299.99731 * 14 12 10 18 18 C 1.54265 * 110.48527 * 153.45372 * 5 3 2 19 19 C 1.53876 * 106.59492 * 95.07327 * 18 5 3 20 20 C 1.54258 * 106.60258 * 359.97438 * 19 18 5 21 21 C 1.54884 * 110.48872 * 268.23283 * 5 3 2 22 22 H 1.08994 * 109.47038 * 59.99768 * 1 2 3 23 23 H 1.08991 * 109.47104 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46643 * 299.99936 * 1 2 3 25 25 H 0.96994 * 120.00002 * 180.02562 * 2 1 3 26 26 H 1.00903 * 110.99589 * 296.74805 * 6 5 3 27 27 H 1.09004 * 109.47580 * 66.30174 * 9 7 6 28 28 H 1.08999 * 109.47811 * 186.30311 * 9 7 6 29 29 H 1.09006 * 109.47141 * 306.30029 * 9 7 6 30 30 H 0.96999 * 119.99994 * 180.02562 * 13 12 10 31 31 H 1.09000 * 110.03309 * 335.78642 * 18 5 3 32 32 H 1.08998 * 110.03216 * 214.35163 * 18 5 3 33 33 H 1.09002 * 110.03402 * 119.28691 * 19 18 5 34 34 H 1.09004 * 110.02669 * 240.71147 * 19 18 5 35 35 H 1.08999 * 110.49158 * 142.28999 * 20 19 18 36 36 H 1.08999 * 110.48803 * 264.93743 * 20 19 18 37 37 H 1.08997 * 110.75857 * 160.94885 * 21 5 3 38 38 H 1.09003 * 110.75851 * 37.57141 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5350 2.2161 0.0770 5 6 3.6429 1.1689 -0.0955 6 7 4.1112 0.0151 -0.8749 7 6 3.5795 0.0536 -2.2437 8 1 2.8427 0.8527 -2.3250 9 6 4.7223 0.3115 -3.2277 10 6 2.9269 -1.2659 -2.5665 11 1 2.9093 -2.0544 -1.8287 12 6 2.3533 -1.4669 -3.8040 13 7 2.3752 -0.5069 -4.7027 14 14 1.5450 -3.1027 -4.2043 15 1 0.4355 -3.3534 -3.2497 16 1 1.0075 -3.0637 -5.5881 17 1 2.5490 -4.1912 -4.0933 18 6 4.1422 2.4851 -0.7266 19 6 4.4917 3.4266 0.4393 20 6 4.1920 2.6500 1.7380 21 6 4.2759 1.1612 1.3180 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9500 -0.8400 -0.0004 26 1 3.8705 -0.8516 -0.4177 27 1 5.4014 -0.5411 -3.2275 28 1 4.3151 0.4514 -4.2290 29 1 5.2648 1.2081 -2.9276 30 1 1.9713 -0.6481 -5.5732 31 1 3.3570 2.9264 -1.3404 32 1 5.0285 2.2961 -1.3323 33 1 5.5475 3.6945 0.3993 34 1 3.8761 4.3248 0.3912 35 1 4.9403 2.8743 2.4981 36 1 3.1929 2.8882 2.1030 37 1 5.3133 0.8296 1.2749 38 1 3.6970 0.5353 1.9971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308905143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -66.325568 kcal Electronic energy + Delta-G solvation = -18803.277416 eV Core-core repulsion = 16065.180066 eV Total energy + Delta-G solvation = -2738.097351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53499 -38.30123 -36.80178 -35.38601 -33.95364 -31.03938 -29.56897 -27.95499 -27.48828 -26.72994 -23.03949 -22.25798 -21.18697 -20.30404 -18.90191 -17.92196 -17.10232 -16.74263 -16.50892 -15.99160 -15.76607 -15.26080 -14.68335 -14.33272 -14.23877 -13.65574 -13.45360 -13.32705 -13.12790 -12.95456 -12.78144 -12.51311 -12.29707 -12.25087 -12.11564 -11.93921 -11.89615 -11.45521 -11.31397 -11.05626 -10.83487 -10.49995 -10.00183 -9.13887 -8.09099 -6.24348 1.42619 1.44708 1.50868 1.68508 2.37741 2.42806 3.19293 3.47141 3.65441 3.74760 3.93301 4.25734 4.41536 4.55503 4.57402 4.61447 4.72768 4.84111 4.84751 4.87424 4.95207 5.10187 5.11143 5.17345 5.23721 5.31708 5.33917 5.50548 5.52365 5.56090 5.69119 5.96457 6.15687 6.31881 6.53978 6.77049 7.02602 7.30824 7.46112 8.95211 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.008984 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.278853 B = 3115.910310 C = 3621.033654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.719 5.719 3 C 0.496 3.504 4 O -0.589 6.589 5 C 0.094 3.906 6 N -0.659 5.659 7 C 0.222 3.778 8 H -0.023 1.023 9 C -0.112 4.112 10 C -0.532 4.532 11 H 0.071 0.929 12 C 0.016 3.984 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.267 1.267 16 H -0.296 1.296 17 H -0.269 1.269 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.097 4.097 22 H 0.029 0.971 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.408 0.592 26 H 0.339 0.661 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.025 0.975 30 H 0.258 0.742 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 0.118 11.926 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.369 5.369 3 C 0.282 3.718 4 O -0.469 6.469 5 C -0.001 4.001 6 N -0.291 5.291 7 C 0.114 3.886 8 H -0.005 1.005 9 C -0.170 4.170 10 C -0.571 4.571 11 H 0.089 0.911 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.192 1.192 16 H -0.222 1.222 17 H -0.194 1.194 18 C -0.136 4.136 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.135 4.135 22 H 0.048 0.952 23 H 0.119 0.881 24 H 0.080 0.920 25 H 0.244 0.756 26 H 0.158 0.842 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.473 1.171 11.603 11.922 hybrid contribution -1.606 -1.243 -1.008 2.267 sum 0.867 -0.072 10.595 10.631 Atomic orbital electron populations 1.21501 0.79615 1.03425 1.00608 1.45735 1.08100 1.08935 1.74151 1.22005 0.92418 0.83350 0.74070 1.90565 1.71616 1.32850 1.51871 1.22248 0.86948 0.93972 0.96967 1.60929 1.61642 1.03468 1.03112 1.18852 0.90656 0.94600 0.84522 1.00517 1.21600 0.97607 0.97506 1.00322 1.21711 1.36060 0.99632 0.99676 0.91143 1.25694 0.96690 0.99544 0.96451 1.70067 1.45430 1.34109 1.06118 0.85671 0.79000 0.80419 0.76882 1.19182 1.22200 1.19416 1.22021 0.99981 0.93194 0.98365 1.22027 1.01752 0.97523 0.93634 1.22298 1.01658 0.93930 0.97450 1.22529 1.02243 0.97695 0.90998 0.95235 0.88119 0.91965 0.75601 0.84166 0.95117 0.93559 0.95639 0.93263 0.95416 0.90591 0.89663 0.92718 0.88467 0.93134 0.87882 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.95 10.71 127.77 1.37 4.32 16 2 N -0.72 -25.58 5.15 -484.52 -2.50 -28.08 16 3 C 0.50 19.89 5.13 87.66 0.45 20.34 16 4 O -0.59 -27.28 15.83 -3.04 -0.05 -27.33 16 5 C 0.09 3.34 0.70 3.85 0.00 3.35 16 6 N -0.66 -25.13 5.83 -450.52 -2.63 -27.76 16 7 C 0.22 10.60 1.55 44.17 0.07 10.66 16 8 H -0.02 -1.29 6.38 -2.39 -0.02 -1.31 16 9 C -0.11 -5.44 9.16 71.98 0.66 -4.79 16 10 C -0.53 -26.34 7.93 25.60 0.20 -26.14 16 11 H 0.07 3.21 7.32 -2.91 -0.02 3.19 16 12 C 0.02 0.83 5.30 84.65 0.45 1.28 16 13 N -0.92 -52.29 11.39 21.45 0.24 -52.04 16 14 Si 0.95 41.30 29.54 68.60 2.03 43.32 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C -0.10 -3.61 4.70 31.32 0.15 -3.46 16 19 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 20 C -0.12 -2.94 6.51 31.68 0.21 -2.74 16 21 C -0.10 -2.58 6.03 31.89 0.19 -2.38 16 22 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.41 13.27 6.79 -92.71 -0.63 12.64 16 26 H 0.34 11.84 6.50 -89.69 -0.58 11.26 16 27 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.05 2.51 6.26 -2.39 -0.01 2.49 16 29 H 0.02 1.12 6.45 -2.38 -0.02 1.10 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.03 1.21 7.37 -2.39 -0.02 1.19 16 32 H 0.08 2.85 6.30 -2.39 -0.02 2.83 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.45 8.07 -2.39 -0.02 1.43 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -63.82 296.52 0.90 -62.92 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.16 Total: 31.51 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.96 Total: -2.55 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.88 Total: -107.88 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.05 Total: -27.33 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -63.82 0.90 -62.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308905143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.408 kcal (2) G-P(sol) polarization free energy of solvation -63.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds