Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 119.99930 * 2 1 4 4 O 1.21279 * 120.00144 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99950 * 179.72534 * 3 2 1 6 6 H 1.08998 * 110.01709 * 334.53439 * 5 3 2 7 7 C 1.54262 * 110.02875 * 213.14284 * 5 3 2 8 8 C 1.54972 * 104.15806 * 217.13721 * 7 5 3 9 9 C 1.54884 * 102.77538 * 37.88864 * 8 7 5 10 10 C 1.53868 * 110.03118 * 95.92620 * 5 3 2 11 11 H 1.09000 * 110.03168 * 238.56705 * 10 5 3 12 12 N 1.46904 * 110.03392 * 359.95007 * 10 5 3 13 13 C 1.46906 * 110.99769 * 195.63990 * 12 10 5 14 14 H 1.08994 * 109.47252 * 325.00016 * 13 12 10 15 15 C 1.52997 * 109.47051 * 85.00481 * 13 12 10 16 16 C 1.50706 * 109.46755 * 204.99814 * 13 12 10 17 17 H 1.08003 * 119.99971 * 0.02562 * 16 13 12 18 18 C 1.37871 * 119.99757 * 179.97438 * 16 13 12 19 19 N 1.31518 * 120.00150 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99950 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47225 * 90.00131 * 20 18 16 22 22 H 1.48497 * 109.47126 * 210.00499 * 20 18 16 23 23 H 1.48497 * 109.47157 * 330.00575 * 20 18 16 24 24 H 1.09001 * 109.47382 * 59.99563 * 1 2 3 25 25 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47268 * 299.99831 * 1 2 3 27 27 H 0.96994 * 120.00251 * 180.02562 * 2 1 3 28 28 H 1.08999 * 110.48821 * 335.78272 * 7 5 3 29 29 H 1.09000 * 110.48691 * 98.42954 * 7 5 3 30 30 H 1.08998 * 110.71780 * 279.57468 * 8 7 5 31 31 H 1.08998 * 110.92481 * 156.29850 * 8 7 5 32 32 H 1.09001 * 110.48378 * 203.40647 * 9 8 7 33 33 H 1.08997 * 110.48969 * 80.76642 * 9 8 7 34 34 H 1.00899 * 110.99857 * 319.59179 * 12 10 5 35 35 H 1.08999 * 109.47170 * 179.97438 * 15 13 12 36 36 H 1.09010 * 109.46853 * 299.99129 * 15 13 12 37 37 H 1.08994 * 109.47473 * 59.99670 * 15 13 12 38 38 H 0.97003 * 119.99889 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0063 6 1 4.0171 0.2437 0.4504 7 6 4.1709 2.3827 0.7979 8 6 5.4295 2.8315 0.0129 9 6 5.0093 2.6127 -1.4618 10 6 4.1789 1.3131 -1.4298 11 1 4.8096 0.4607 -1.6823 12 7 3.0585 1.4072 -2.3753 13 6 3.5118 1.1755 -3.7533 14 1 4.5133 1.5864 -3.8804 15 6 3.5378 -0.3280 -4.0356 16 6 2.5662 1.8505 -4.7133 17 1 1.7141 2.3973 -4.3373 18 6 2.7896 1.7708 -6.0714 19 7 3.8275 1.1053 -6.5293 20 14 1.6180 2.6080 -7.2614 21 1 2.0809 3.9956 -7.5179 22 1 1.5867 1.8524 -8.5393 23 1 0.2551 2.6419 -6.6728 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.4266 3.1789 0.8126 29 1 4.4380 2.0901 1.8134 30 1 6.2857 2.2069 0.2673 31 1 5.6507 3.8823 0.1997 32 1 5.8883 2.4884 -2.0944 33 1 4.4005 3.4460 -1.8126 34 1 2.3196 0.7673 -2.1252 35 1 3.8736 -0.5000 -5.0582 36 1 4.2217 -0.8163 -3.3412 37 1 2.5363 -0.7389 -3.9085 38 1 3.9844 1.0490 -7.4849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308964139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = -44.691853 kcal Electronic energy + Delta-G solvation = -18282.672510 eV Core-core repulsion = 15545.513268 eV Total energy + Delta-G solvation = -2737.159242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99462 -37.22079 -34.90297 -34.21407 -32.06472 -29.54774 -28.57405 -26.38716 -25.45871 -24.98667 -21.34506 -20.85798 -19.78711 -19.08749 -16.89472 -16.51025 -15.65576 -15.28752 -14.79518 -14.55028 -14.32878 -13.90665 -13.23247 -13.19242 -12.57091 -12.38945 -12.13959 -11.80253 -11.47603 -11.18804 -11.05039 -10.86842 -10.73523 -10.71043 -10.57150 -10.33480 -10.23171 -10.06633 -9.75392 -9.40281 -8.96324 -8.86089 -8.31841 -7.18754 -5.94793 -3.96946 3.03961 3.36047 3.41734 3.47201 3.47817 4.47778 4.79476 4.91417 4.97814 5.25136 5.37029 5.41584 5.52033 5.59509 5.65951 5.80799 5.89468 5.93251 5.98128 6.11388 6.26370 6.29225 6.48449 6.59160 6.64746 6.67848 6.81148 6.90272 7.10668 7.42227 7.70318 7.74889 7.94237 8.31298 8.55005 8.59385 8.66570 9.11059 9.68215 11.12365 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.007732 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.085516 B = 3620.492768 C = 4175.048065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.745 5.745 3 C 0.530 3.470 4 O -0.520 6.520 5 C -0.113 4.113 6 H 0.081 0.919 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.109 4.109 10 C 0.097 3.903 11 H 0.040 0.960 12 N -0.674 5.674 13 C 0.211 3.789 14 H 0.037 0.963 15 C -0.169 4.169 16 C -0.490 4.490 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.275 1.275 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.397 0.603 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.322 0.678 35 H 0.090 0.910 36 H 0.003 0.997 37 H 0.025 0.975 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -3.991 13.716 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.398 5.398 3 C 0.316 3.684 4 O -0.394 6.394 5 C -0.135 4.135 6 H 0.099 0.901 7 C -0.145 4.145 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.014 4.014 11 H 0.058 0.942 12 N -0.307 5.307 13 C 0.103 3.897 14 H 0.055 0.945 15 C -0.228 4.228 16 C -0.529 4.529 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.200 1.200 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.230 0.770 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.022 0.978 37 H 0.044 0.956 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.080 -2.567 13.483 13.725 hybrid contribution -0.234 -1.222 -0.832 1.497 sum -0.154 -3.790 12.650 13.207 Atomic orbital electron populations 1.21474 0.80063 1.01679 1.02288 1.45924 1.07616 1.08754 1.77511 1.20313 0.89812 0.83426 0.74833 1.90663 1.69937 1.31119 1.47714 1.22160 0.91916 1.00534 0.98916 0.90089 1.22306 0.98161 0.96955 0.97030 1.22474 0.96751 1.00777 0.96005 1.22393 0.98898 0.98440 0.95030 1.21998 0.93377 0.97162 0.88840 0.94228 1.61043 1.08356 1.57650 1.03631 1.19197 0.96598 0.90982 0.82889 0.94521 1.22440 0.97505 0.99577 1.03270 1.21168 1.10532 1.31187 0.90047 0.92027 1.24935 0.95645 0.95688 0.98282 1.69883 1.28238 1.42343 1.13490 0.86522 0.81413 0.79427 0.80181 1.20759 1.21474 1.19976 0.91907 0.91187 0.92735 0.76983 0.89612 0.92116 0.92050 0.91534 0.92046 0.89831 0.85869 0.89166 0.97761 0.95595 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.70 59.84 0.64 1.71 16 2 N -0.75 -9.82 5.29 -67.08 -0.35 -10.17 16 3 C 0.53 8.79 4.65 -10.98 -0.05 8.74 16 4 O -0.52 -10.72 15.77 5.56 0.09 -10.63 16 5 C -0.11 -1.68 3.29 -90.66 -0.30 -1.98 16 6 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 7 C -0.11 -1.48 6.32 -25.03 -0.16 -1.64 16 8 C -0.12 -1.66 6.91 -24.70 -0.17 -1.83 16 9 C -0.11 -1.91 5.89 -25.08 -0.15 -2.06 16 10 C 0.10 1.76 3.07 -66.60 -0.20 1.55 16 11 H 0.04 0.72 7.20 -51.93 -0.37 0.34 16 12 N -0.67 -14.84 5.35 -99.78 -0.53 -15.37 16 13 C 0.21 5.37 2.42 -68.86 -0.17 5.20 16 14 H 0.04 1.01 7.40 -51.93 -0.38 0.63 16 15 C -0.17 -4.05 8.93 37.16 0.33 -3.72 16 16 C -0.49 -13.97 8.84 -34.44 -0.30 -14.28 16 17 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 18 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 19 N -0.90 -25.97 11.32 55.43 0.63 -25.35 16 20 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.40 4.10 8.82 -40.82 -0.36 3.74 16 28 H 0.09 1.39 6.92 -51.93 -0.36 1.03 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.68 8.05 -51.93 -0.42 1.26 16 34 H 0.32 6.88 6.17 -39.29 -0.24 6.64 16 35 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 36 H 0.00 0.07 7.38 -51.92 -0.38 -0.31 16 37 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -31.94 302.29 -7.45 -39.39 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.19 Total: 7.36 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.62 Total: -6.85 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.26 Total: -50.89 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.94 -7.45 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.302 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds