Wall clock time and date at job start Mon Mar 30 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 119.99930 * 2 1 4 4 O 1.21279 * 120.00144 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99950 * 179.72534 * 3 2 1 6 6 H 1.08998 * 110.01709 * 334.53439 * 5 3 2 7 7 C 1.54262 * 110.02875 * 213.14284 * 5 3 2 8 8 C 1.54972 * 104.15806 * 217.13721 * 7 5 3 9 9 C 1.54884 * 102.77538 * 37.88864 * 8 7 5 10 10 C 1.53868 * 110.03118 * 95.92620 * 5 3 2 11 11 H 1.09000 * 110.03168 * 238.56705 * 10 5 3 12 12 N 1.46904 * 110.03392 * 359.95007 * 10 5 3 13 13 C 1.46906 * 110.99769 * 195.63990 * 12 10 5 14 14 H 1.08994 * 109.47252 * 325.00016 * 13 12 10 15 15 C 1.52997 * 109.47051 * 85.00481 * 13 12 10 16 16 C 1.50706 * 109.46755 * 204.99814 * 13 12 10 17 17 H 1.08003 * 119.99971 * 0.02562 * 16 13 12 18 18 C 1.37871 * 119.99757 * 179.97438 * 16 13 12 19 19 N 1.31518 * 120.00150 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99950 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47225 * 90.00131 * 20 18 16 22 22 H 1.48497 * 109.47126 * 210.00499 * 20 18 16 23 23 H 1.48497 * 109.47157 * 330.00575 * 20 18 16 24 24 H 1.09001 * 109.47382 * 59.99563 * 1 2 3 25 25 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47268 * 299.99831 * 1 2 3 27 27 H 0.96994 * 120.00251 * 180.02562 * 2 1 3 28 28 H 1.08999 * 110.48821 * 335.78272 * 7 5 3 29 29 H 1.09000 * 110.48691 * 98.42954 * 7 5 3 30 30 H 1.08998 * 110.71780 * 279.57468 * 8 7 5 31 31 H 1.08998 * 110.92481 * 156.29850 * 8 7 5 32 32 H 1.09001 * 110.48378 * 203.40647 * 9 8 7 33 33 H 1.08997 * 110.48969 * 80.76642 * 9 8 7 34 34 H 1.00899 * 110.99857 * 319.59179 * 12 10 5 35 35 H 1.08999 * 109.47170 * 179.97438 * 15 13 12 36 36 H 1.09010 * 109.46853 * 299.99129 * 15 13 12 37 37 H 1.08994 * 109.47473 * 59.99670 * 15 13 12 38 38 H 0.97003 * 119.99889 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0063 6 1 4.0171 0.2437 0.4504 7 6 4.1709 2.3827 0.7979 8 6 5.4295 2.8315 0.0129 9 6 5.0093 2.6127 -1.4618 10 6 4.1789 1.3131 -1.4298 11 1 4.8096 0.4607 -1.6823 12 7 3.0585 1.4072 -2.3753 13 6 3.5118 1.1755 -3.7533 14 1 4.5133 1.5864 -3.8804 15 6 3.5378 -0.3280 -4.0356 16 6 2.5662 1.8505 -4.7133 17 1 1.7141 2.3973 -4.3373 18 6 2.7896 1.7708 -6.0714 19 7 3.8275 1.1053 -6.5293 20 14 1.6180 2.6080 -7.2614 21 1 2.0809 3.9956 -7.5179 22 1 1.5867 1.8524 -8.5393 23 1 0.2551 2.6419 -6.6728 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.4266 3.1789 0.8126 29 1 4.4380 2.0901 1.8134 30 1 6.2857 2.2069 0.2673 31 1 5.6507 3.8823 0.1997 32 1 5.8883 2.4884 -2.0944 33 1 4.4005 3.4460 -1.8126 34 1 2.3196 0.7673 -2.1252 35 1 3.8736 -0.5000 -5.0582 36 1 4.2217 -0.8163 -3.3412 37 1 2.5363 -0.7389 -3.9085 38 1 3.9844 1.0490 -7.4849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308964139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:46 Heat of formation + Delta-G solvation = -67.996137 kcal Electronic energy + Delta-G solvation = -18283.683060 eV Core-core repulsion = 15545.513268 eV Total energy + Delta-G solvation = -2738.169792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29779 -38.62997 -36.62811 -35.47668 -34.04201 -30.89207 -30.19750 -27.58913 -27.27864 -26.71619 -22.62799 -22.55259 -21.19942 -20.43097 -18.53893 -18.10605 -17.11783 -16.82797 -16.32973 -16.16084 -15.62494 -15.25757 -14.90409 -14.47527 -14.38387 -13.79297 -13.64192 -13.07660 -12.98808 -12.97253 -12.83164 -12.63239 -12.30662 -12.20049 -12.05633 -11.92926 -11.76981 -11.61513 -11.41922 -11.01436 -10.74839 -10.49554 -10.03473 -8.92577 -8.11741 -6.21775 1.38405 1.39497 1.50376 1.75011 2.38846 2.41867 3.16010 3.51997 3.63361 3.74680 4.02251 4.31987 4.47206 4.50555 4.54827 4.55558 4.66759 4.71710 4.76205 4.84502 4.86885 4.98378 5.05672 5.09457 5.16202 5.24564 5.29650 5.46308 5.53930 5.59790 5.69070 5.82419 6.28337 6.61902 6.67409 6.83586 6.92281 7.40584 7.47862 8.93374 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.007732 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.085516 B = 3620.492768 C = 4175.048065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.732 5.732 3 C 0.521 3.479 4 O -0.570 6.570 5 C -0.108 4.108 6 H 0.124 0.876 7 C -0.104 4.104 8 C -0.109 4.109 9 C -0.115 4.115 10 C 0.092 3.908 11 H 0.047 0.953 12 N -0.686 5.686 13 C 0.218 3.782 14 H 0.008 0.992 15 C -0.154 4.154 16 C -0.515 4.515 17 H 0.041 0.959 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.277 1.277 23 H -0.275 1.275 24 H 0.034 0.966 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.414 0.586 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.325 0.675 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.027 0.973 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -5.358 15.101 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.385 5.385 3 C 0.309 3.691 4 O -0.448 6.448 5 C -0.130 4.130 6 H 0.142 0.858 7 C -0.142 4.142 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.019 4.019 11 H 0.065 0.935 12 N -0.318 5.318 13 C 0.109 3.891 14 H 0.026 0.974 15 C -0.214 4.214 16 C -0.554 4.554 17 H 0.059 0.941 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.203 1.203 23 H -0.200 1.200 24 H 0.053 0.947 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.250 0.750 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.502 -3.982 14.882 15.413 hybrid contribution -0.365 -0.807 -1.250 1.532 sum 0.137 -4.789 13.632 14.449 Atomic orbital electron populations 1.21590 0.79338 1.03894 1.00955 1.45869 1.08259 1.08652 1.75707 1.20705 0.90683 0.83522 0.74217 1.90646 1.71004 1.33039 1.50155 1.22210 0.90752 1.03074 0.96919 0.85777 1.22299 0.97299 0.95721 0.98867 1.22442 0.97550 1.02137 0.92514 1.22382 0.98029 0.96942 0.97981 1.22142 0.92329 0.97505 0.89918 0.93512 1.60891 1.10022 1.58074 1.02852 1.18923 0.94278 0.91397 0.84460 0.97383 1.22217 0.98155 0.98732 1.02246 1.21402 1.10698 1.31902 0.91373 0.94103 1.25622 0.97090 0.96171 0.99657 1.69984 1.29176 1.42773 1.13910 0.85611 0.79372 0.78548 0.78389 1.20471 1.20274 1.19990 0.94711 0.87174 0.92658 0.74975 0.92533 0.88496 0.89100 0.90642 0.92633 0.93696 0.85585 0.91860 0.94949 0.95378 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.94 10.70 127.77 1.37 3.31 16 2 N -0.73 -17.80 5.29 -484.51 -2.56 -20.36 16 3 C 0.52 16.73 4.65 87.66 0.41 17.14 16 4 O -0.57 -23.86 15.77 -3.03 -0.05 -23.90 16 5 C -0.11 -2.95 3.29 -10.82 -0.04 -2.98 16 6 H 0.12 2.34 8.13 -2.39 -0.02 2.32 16 7 C -0.10 -2.65 6.32 31.70 0.20 -2.45 16 8 C -0.11 -2.70 6.91 31.91 0.22 -2.48 16 9 C -0.11 -4.02 5.89 31.67 0.19 -3.83 16 10 C 0.09 3.21 3.07 45.64 0.14 3.35 16 11 H 0.05 1.59 7.20 -2.39 -0.02 1.57 16 12 N -0.69 -30.51 5.35 -469.60 -2.51 -33.03 16 13 C 0.22 11.30 2.42 44.17 0.11 11.41 16 14 H 0.01 0.47 7.40 -2.39 -0.02 0.45 16 15 C -0.15 -7.35 8.93 71.98 0.64 -6.71 16 16 C -0.52 -30.12 8.84 25.60 0.23 -29.89 16 17 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -53.55 11.32 21.45 0.24 -53.30 16 20 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.41 7.18 8.82 -92.71 -0.82 6.37 16 28 H 0.06 1.80 6.92 -2.39 -0.02 1.78 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.89 8.05 -2.39 -0.02 1.87 16 34 H 0.32 13.85 6.17 -89.69 -0.55 13.30 16 35 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 36 H 0.03 1.31 7.38 -2.38 -0.02 1.30 16 37 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.69 302.29 0.74 -70.95 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.32 Total: 23.79 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.91 Total: -11.95 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.83 Total: -106.69 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.69 0.74 -70.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.957 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds