Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00129 * 2 1 4 4 O 1.21284 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99917 * 179.72453 * 3 2 1 6 6 H 1.08992 * 110.01962 * 332.68381 * 5 3 2 7 7 C 1.54271 * 110.03232 * 211.29391 * 5 3 2 8 8 C 1.54971 * 104.16099 * 217.13735 * 7 5 3 9 9 C 1.54894 * 102.77502 * 37.88637 * 8 7 5 10 10 C 1.53873 * 110.03305 * 94.07906 * 5 3 2 11 11 H 1.09002 * 110.03001 * 238.61885 * 10 5 3 12 12 N 1.46904 * 110.03429 * 359.97438 * 10 5 3 13 13 C 1.46896 * 111.00412 * 205.00471 * 12 10 5 14 14 H 1.09007 * 109.47084 * 34.99408 * 13 12 10 15 15 C 1.53000 * 109.47111 * 275.00083 * 13 12 10 16 16 C 1.50696 * 109.47380 * 154.99317 * 13 12 10 17 17 H 1.08000 * 119.99929 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00010 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00091 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00152 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47214 * 90.00140 * 20 18 16 22 22 H 1.48496 * 109.47582 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.47207 * 330.00366 * 20 18 16 24 24 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47348 * 299.99890 * 1 2 3 26 26 H 1.09000 * 109.46834 * 59.99890 * 1 2 3 27 27 H 0.97005 * 120.00088 * 179.97438 * 2 1 3 28 28 H 1.09001 * 110.48112 * 335.78297 * 7 5 3 29 29 H 1.08994 * 110.48775 * 98.42803 * 7 5 3 30 30 H 1.08996 * 110.71561 * 279.57675 * 8 7 5 31 31 H 1.08998 * 110.92290 * 156.29448 * 8 7 5 32 32 H 1.08999 * 110.48674 * 203.40160 * 9 8 7 33 33 H 1.09001 * 110.48320 * 80.76393 * 9 8 7 34 34 H 1.00898 * 111.00252 * 81.04136 * 12 10 5 35 35 H 1.09007 * 109.46595 * 299.99624 * 15 13 12 36 36 H 1.08999 * 109.47086 * 59.99608 * 15 13 12 37 37 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 38 38 H 0.97002 * 120.00421 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0170 0.2583 0.4800 7 6 4.1712 2.4074 0.7583 8 6 5.4299 2.8304 -0.0408 9 6 5.0097 2.5642 -1.5077 10 6 4.1790 1.2664 -1.4337 11 1 4.8088 0.4058 -1.6589 12 7 3.0587 1.3309 -2.3818 13 6 3.4615 0.8412 -3.7069 14 1 4.1767 0.0267 -3.5913 15 6 4.1093 1.9805 -4.4963 16 6 2.2480 0.3426 -4.4484 17 1 1.2748 0.3856 -3.9822 18 6 2.3801 -0.1675 -5.7225 19 7 3.5651 -0.2194 -6.2905 20 14 0.8759 -0.7849 -6.6420 21 1 0.2779 0.3308 -7.4186 22 1 1.2747 -1.8748 -7.5684 23 1 -0.1210 -1.3015 -5.6701 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.4270 3.2037 0.7472 29 1 4.4382 2.1477 1.7827 30 1 6.2860 2.2141 0.2337 31 1 5.6512 3.8866 0.1121 32 1 5.8885 2.4194 -2.1360 33 1 4.4010 3.3858 -1.8852 34 1 2.6874 2.2672 -2.4398 35 1 3.3941 2.7949 -4.6119 36 1 4.9870 2.3410 -3.9599 37 1 4.4086 1.6170 -5.4794 38 1 3.6582 -0.5786 -7.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308964140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -48.779279 kcal Electronic energy + Delta-G solvation = -18312.803216 eV Core-core repulsion = 15575.466729 eV Total energy + Delta-G solvation = -2737.336486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75524 -37.29693 -34.77985 -33.97664 -32.05083 -29.49777 -28.49264 -26.35560 -25.41588 -24.89314 -21.12815 -20.57958 -20.16576 -19.10774 -16.81196 -16.50004 -15.57720 -15.20482 -14.54863 -14.46155 -14.33533 -13.32508 -13.17860 -13.08326 -12.62380 -12.38848 -12.04365 -11.91457 -11.47471 -11.30184 -11.16909 -10.92682 -10.77233 -10.64174 -10.46693 -10.41398 -10.27413 -10.08541 -9.77612 -9.21616 -8.91095 -8.56978 -8.34061 -7.22417 -5.96682 -3.99282 3.30839 3.32848 3.39175 3.43357 3.79355 4.44931 4.79766 4.95902 5.05714 5.34800 5.41819 5.45736 5.63463 5.68727 5.80238 5.85808 5.86426 5.90870 6.02918 6.11112 6.19465 6.23713 6.42317 6.54343 6.61863 6.76624 6.92909 6.93703 7.14860 7.39312 7.78429 7.91421 8.03036 8.30435 8.56865 8.65559 8.84517 9.08242 9.65833 11.10128 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.008350 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.925200 B = 3352.429219 C = 4314.296839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.727 5.727 3 C 0.556 3.444 4 O -0.554 6.554 5 C -0.108 4.108 6 H 0.082 0.918 7 C -0.113 4.113 8 C -0.122 4.122 9 C -0.147 4.147 10 C 0.098 3.902 11 H 0.080 0.920 12 N -0.677 5.677 13 C 0.214 3.786 14 H 0.032 0.968 15 C -0.171 4.171 16 C -0.491 4.491 17 H 0.060 0.940 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.895 3.105 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.398 0.602 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.334 0.666 35 H 0.025 0.975 36 H 0.011 0.989 37 H 0.086 0.914 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 0.766 12.643 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.376 5.376 3 C 0.343 3.657 4 O -0.432 6.432 5 C -0.130 4.130 6 H 0.100 0.900 7 C -0.151 4.151 8 C -0.160 4.160 9 C -0.187 4.187 10 C -0.014 4.014 11 H 0.098 0.902 12 N -0.306 5.306 13 C 0.107 3.893 14 H 0.050 0.950 15 C -0.231 4.231 16 C -0.529 4.529 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.200 1.200 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.044 0.956 36 H 0.030 0.970 37 H 0.105 0.895 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.017 0.827 12.646 12.714 hybrid contribution 0.035 -0.120 -1.098 1.105 sum 1.052 0.707 11.548 11.618 Atomic orbital electron populations 1.21387 0.80580 1.01360 1.01690 1.45573 1.07110 1.08748 1.76214 1.19960 0.89258 0.83209 0.73239 1.90598 1.70320 1.31562 1.50761 1.22076 0.92643 0.99792 0.98494 0.90008 1.22364 0.97819 0.97323 0.97568 1.22450 0.97180 1.00620 0.95714 1.23208 1.00429 0.98946 0.96076 1.22120 0.91885 0.96981 0.90388 0.90194 1.60838 1.29373 1.28919 1.11512 1.19192 0.95204 0.92305 0.82626 0.95045 1.22519 0.97291 0.98944 1.04297 1.21145 0.94130 1.38960 0.98710 0.92170 1.24936 0.95858 0.96256 0.97503 1.69885 1.21981 1.46942 1.14987 0.86542 0.83141 0.78354 0.79582 1.20910 1.21450 1.19992 0.91521 0.93276 0.92137 0.76936 0.89853 0.92065 0.91821 0.91898 0.91622 0.91412 0.84814 0.95573 0.97007 0.89546 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.70 59.85 0.64 1.95 16 2 N -0.73 -10.90 5.71 -67.08 -0.38 -11.28 16 3 C 0.56 9.57 5.43 -10.99 -0.06 9.51 16 4 O -0.55 -11.35 15.66 5.55 0.09 -11.27 16 5 C -0.11 -1.60 3.29 -90.65 -0.30 -1.90 16 6 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.11 -1.52 6.32 -25.03 -0.16 -1.68 16 8 C -0.12 -1.55 6.91 -24.69 -0.17 -1.72 16 9 C -0.15 -2.30 4.94 -25.07 -0.12 -2.43 16 10 C 0.10 1.69 3.20 -66.59 -0.21 1.48 16 11 H 0.08 1.41 7.43 -51.93 -0.39 1.02 16 12 N -0.68 -14.22 4.45 -99.78 -0.44 -14.67 16 13 C 0.21 5.28 2.57 -68.87 -0.18 5.10 16 14 H 0.03 0.84 7.43 -51.92 -0.39 0.46 16 15 C -0.17 -4.11 8.73 37.16 0.32 -3.78 16 16 C -0.49 -13.52 8.84 -34.44 -0.30 -13.82 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.29 16 18 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 19 N -0.90 -25.61 11.32 55.43 0.63 -24.99 16 20 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.40 5.06 8.83 -40.82 -0.36 4.70 16 28 H 0.08 1.29 6.89 -51.93 -0.36 0.94 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.03 7.37 -51.93 -0.38 0.65 16 33 H 0.07 1.15 7.56 -51.93 -0.39 0.76 16 34 H 0.33 7.40 7.75 -39.29 -0.30 7.10 16 35 H 0.03 0.61 8.13 -51.92 -0.42 0.19 16 36 H 0.01 0.24 5.93 -51.93 -0.31 -0.07 16 37 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -30.37 300.76 -7.36 -37.72 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.12 Total: 9.21 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.63 Total: -5.88 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.20 Total: -50.93 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.37 -7.36 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.059 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds