Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00129 * 2 1 4 4 O 1.21284 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99917 * 179.72453 * 3 2 1 6 6 H 1.08992 * 110.01962 * 332.68381 * 5 3 2 7 7 C 1.54271 * 110.03232 * 211.29391 * 5 3 2 8 8 C 1.54971 * 104.16099 * 217.13735 * 7 5 3 9 9 C 1.54894 * 102.77502 * 37.88637 * 8 7 5 10 10 C 1.53873 * 110.03305 * 94.07906 * 5 3 2 11 11 H 1.09002 * 110.03001 * 238.61885 * 10 5 3 12 12 N 1.46904 * 110.03429 * 359.97438 * 10 5 3 13 13 C 1.46896 * 111.00412 * 205.00471 * 12 10 5 14 14 H 1.09007 * 109.47084 * 34.99408 * 13 12 10 15 15 C 1.53000 * 109.47111 * 275.00083 * 13 12 10 16 16 C 1.50696 * 109.47380 * 154.99317 * 13 12 10 17 17 H 1.08000 * 119.99929 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00010 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00091 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00152 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47214 * 90.00140 * 20 18 16 22 22 H 1.48496 * 109.47582 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.47207 * 330.00366 * 20 18 16 24 24 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47348 * 299.99890 * 1 2 3 26 26 H 1.09000 * 109.46834 * 59.99890 * 1 2 3 27 27 H 0.97005 * 120.00088 * 179.97438 * 2 1 3 28 28 H 1.09001 * 110.48112 * 335.78297 * 7 5 3 29 29 H 1.08994 * 110.48775 * 98.42803 * 7 5 3 30 30 H 1.08996 * 110.71561 * 279.57675 * 8 7 5 31 31 H 1.08998 * 110.92290 * 156.29448 * 8 7 5 32 32 H 1.08999 * 110.48674 * 203.40160 * 9 8 7 33 33 H 1.09001 * 110.48320 * 80.76393 * 9 8 7 34 34 H 1.00898 * 111.00252 * 81.04136 * 12 10 5 35 35 H 1.09007 * 109.46595 * 299.99624 * 15 13 12 36 36 H 1.08999 * 109.47086 * 59.99608 * 15 13 12 37 37 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 38 38 H 0.97002 * 120.00421 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0170 0.2583 0.4800 7 6 4.1712 2.4074 0.7583 8 6 5.4299 2.8304 -0.0408 9 6 5.0097 2.5642 -1.5077 10 6 4.1790 1.2664 -1.4337 11 1 4.8088 0.4058 -1.6589 12 7 3.0587 1.3309 -2.3818 13 6 3.4615 0.8412 -3.7069 14 1 4.1767 0.0267 -3.5913 15 6 4.1093 1.9805 -4.4963 16 6 2.2480 0.3426 -4.4484 17 1 1.2748 0.3856 -3.9822 18 6 2.3801 -0.1675 -5.7225 19 7 3.5651 -0.2194 -6.2905 20 14 0.8759 -0.7849 -6.6420 21 1 0.2779 0.3308 -7.4186 22 1 1.2747 -1.8748 -7.5684 23 1 -0.1210 -1.3015 -5.6701 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.4270 3.2037 0.7472 29 1 4.4382 2.1477 1.7827 30 1 6.2860 2.2141 0.2337 31 1 5.6512 3.8866 0.1121 32 1 5.8885 2.4194 -2.1360 33 1 4.4010 3.3858 -1.8852 34 1 2.6874 2.2672 -2.4398 35 1 3.3941 2.7949 -4.6119 36 1 4.9870 2.3410 -3.9599 37 1 4.4086 1.6170 -5.4794 38 1 3.6582 -0.5786 -7.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308964140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -70.125552 kcal Electronic energy + Delta-G solvation = -18313.728860 eV Core-core repulsion = 15575.466729 eV Total energy + Delta-G solvation = -2738.262130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08074 -38.71397 -36.49383 -35.29960 -33.97180 -30.81918 -30.09852 -27.71357 -27.11631 -26.60207 -22.41829 -22.29029 -21.56887 -20.41308 -18.49957 -18.00469 -17.16089 -16.71597 -16.28665 -15.77425 -15.59717 -14.93530 -14.72339 -14.41773 -14.30765 -13.78704 -13.63954 -13.29477 -13.00841 -12.93942 -12.79011 -12.66527 -12.30761 -12.20289 -12.10602 -11.82872 -11.70787 -11.58544 -11.48596 -10.90255 -10.59032 -10.47162 -9.84547 -8.92570 -8.08887 -6.18732 1.40137 1.41565 1.51704 1.96922 2.43161 2.61228 3.19215 3.49192 3.75040 3.86162 4.07653 4.33431 4.53846 4.55358 4.58224 4.58985 4.66518 4.73813 4.79289 4.84366 4.91855 5.01719 5.06170 5.13108 5.20105 5.26112 5.29383 5.45709 5.50768 5.70557 5.74103 5.84649 6.29901 6.66119 6.80154 6.83580 6.95415 7.50682 7.56884 8.96084 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.008350 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.925200 B = 3352.429219 C = 4314.296839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.722 5.722 3 C 0.546 3.454 4 O -0.594 6.594 5 C -0.103 4.103 6 H 0.114 0.886 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.147 4.147 10 C 0.092 3.908 11 H 0.077 0.923 12 N -0.677 5.677 13 C 0.223 3.777 14 H 0.009 0.991 15 C -0.158 4.158 16 C -0.508 4.508 17 H 0.046 0.954 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.955 3.045 21 H -0.281 1.281 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.410 0.590 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.325 0.675 35 H 0.018 0.982 36 H 0.035 0.965 37 H 0.059 0.941 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 0.117 13.957 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.372 5.372 3 C 0.334 3.666 4 O -0.475 6.475 5 C -0.125 4.125 6 H 0.132 0.868 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.186 4.186 10 C -0.019 4.019 11 H 0.095 0.905 12 N -0.305 5.305 13 C 0.114 3.886 14 H 0.027 0.973 15 C -0.217 4.217 16 C -0.547 4.547 17 H 0.064 0.936 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.196 1.196 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.245 0.755 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.496 0.147 13.981 14.061 hybrid contribution -0.114 0.070 -1.483 1.489 sum 1.382 0.217 12.498 12.576 Atomic orbital electron populations 1.21464 0.80022 1.03187 1.00483 1.45626 1.07733 1.08851 1.74979 1.20435 0.90330 0.83115 0.72687 1.90579 1.71294 1.33004 1.52592 1.22108 0.91061 1.02177 0.97133 0.86790 1.22342 0.97351 0.95799 0.99118 1.22421 0.97479 1.01991 0.92856 1.23122 0.99717 0.97307 0.98486 1.22252 0.91058 0.97777 0.90784 0.90461 1.60733 1.31285 1.28227 1.10256 1.18924 0.93597 0.91740 0.84295 0.97262 1.22337 0.97960 0.98400 1.03003 1.21386 0.94460 1.39489 0.99379 0.93601 1.25635 0.98418 0.96423 0.98255 1.69995 1.23520 1.47323 1.15223 0.85610 0.80040 0.77881 0.78364 1.20733 1.20748 1.19600 0.88199 0.92647 0.95172 0.75519 0.92230 0.89116 0.89491 0.90622 0.91739 0.93229 0.85767 0.96266 0.94607 0.92232 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.49 10.70 127.77 1.37 3.86 16 2 N -0.72 -20.78 5.71 -484.52 -2.77 -23.55 16 3 C 0.55 18.33 5.43 87.66 0.48 18.81 16 4 O -0.59 -24.44 15.66 -3.04 -0.05 -24.49 16 5 C -0.10 -2.85 3.29 -10.81 -0.04 -2.88 16 6 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 7 C -0.11 -2.64 6.32 31.70 0.20 -2.44 16 8 C -0.11 -2.46 6.91 31.92 0.22 -2.24 16 9 C -0.15 -4.40 4.94 31.67 0.16 -4.25 16 10 C 0.09 3.08 3.20 45.64 0.15 3.23 16 11 H 0.08 2.63 7.43 -2.39 -0.02 2.61 16 12 N -0.68 -28.62 4.45 -469.60 -2.09 -30.71 16 13 C 0.22 11.14 2.57 44.17 0.11 11.25 16 14 H 0.01 0.51 7.43 -2.38 -0.02 0.50 16 15 C -0.16 -7.66 8.73 71.98 0.63 -7.03 16 16 C -0.51 -28.41 8.84 25.60 0.23 -28.19 16 17 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 18 C 0.01 0.60 5.30 84.65 0.45 1.05 16 19 N -0.92 -52.91 11.32 21.45 0.24 -52.66 16 20 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.41 9.63 8.83 -92.70 -0.82 8.81 16 28 H 0.06 1.77 6.89 -2.39 -0.02 1.76 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.92 7.37 -2.39 -0.02 1.91 16 33 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 34 H 0.32 14.72 7.75 -89.70 -0.70 14.02 16 35 H 0.02 0.91 8.13 -2.38 -0.02 0.89 16 36 H 0.04 1.51 5.93 -2.39 -0.01 1.50 16 37 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -66.10 300.76 0.85 -65.25 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.46 Total: 28.46 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.95 Total: -8.84 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -4.62 Total: -106.92 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.10 0.85 -65.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.876 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds