Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 120.00065 * 2 1 4 4 O 1.21276 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00265 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.81591 * 56.66157 * 5 3 2 7 7 C 1.54886 * 110.75889 * 293.32847 * 5 3 2 8 8 C 1.54261 * 104.19820 * 203.74044 * 7 5 3 9 9 C 1.53875 * 106.59738 * 23.60911 * 8 7 5 10 10 C 1.54258 * 106.59955 * 359.97438 * 9 8 7 11 11 H 1.09001 * 110.49171 * 95.20280 * 10 9 8 12 12 N 1.46906 * 110.48750 * 217.71181 * 10 9 8 13 13 C 1.46895 * 110.99811 * 273.54670 * 12 10 9 14 14 H 1.09000 * 109.47628 * 324.99332 * 13 12 10 15 15 C 1.52994 * 109.47308 * 85.00322 * 13 12 10 16 16 C 1.50707 * 109.47005 * 205.00012 * 13 12 10 17 17 H 1.08004 * 119.99517 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00408 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99588 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00242 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47073 * 89.99820 * 20 18 16 22 22 H 1.48499 * 109.46931 * 209.99440 * 20 18 16 23 23 H 1.48491 * 109.46943 * 329.99726 * 20 18 16 24 24 H 1.09000 * 109.46678 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46969 * 299.99793 * 1 2 3 26 26 H 1.08997 * 109.46968 * 60.00608 * 1 2 3 27 27 H 0.97003 * 119.99808 * 179.97438 * 2 1 3 28 28 H 1.09003 * 110.48915 * 85.05755 * 7 5 3 29 29 H 1.09002 * 110.59509 * 322.47717 * 7 5 3 30 30 H 1.09000 * 110.03604 * 264.32098 * 8 7 5 31 31 H 1.09006 * 110.07502 * 142.91239 * 8 7 5 32 32 H 1.08997 * 110.02964 * 240.71317 * 9 8 7 33 33 H 1.09001 * 110.07432 * 119.30779 * 9 8 7 34 34 H 1.00901 * 110.99484 * 37.50246 * 12 10 9 35 35 H 1.09008 * 109.47100 * 299.99263 * 15 13 12 36 36 H 1.08994 * 109.47860 * 59.99312 * 15 13 12 37 37 H 1.09004 * 109.47597 * 180.02562 * 15 13 12 38 38 H 0.96997 * 119.99974 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0336 0.6071 -0.8504 7 6 4.1943 0.5940 1.3308 8 6 5.6084 1.1990 1.4490 9 6 5.6087 2.4844 0.6031 10 6 4.1950 2.6153 -0.0001 11 1 3.5735 3.2607 0.6207 12 7 4.2674 3.1377 -1.3712 13 6 4.2904 4.6065 -1.3744 14 1 3.6679 4.9814 -0.5619 15 6 5.7277 5.0944 -1.1827 16 6 3.7587 5.1144 -2.6899 17 1 3.4364 4.4158 -3.4479 18 6 3.6847 6.4707 -2.9262 19 7 4.0777 7.3213 -2.0032 20 14 3.0263 7.1002 -4.5570 21 1 1.5567 7.2888 -4.4579 22 1 3.6710 8.3975 -4.8834 23 1 3.3279 6.1147 -5.6260 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 4.2474 -0.4937 1.2845 29 1 3.5732 0.9093 2.1692 30 1 6.3481 0.4977 1.0629 31 1 5.8278 1.4370 2.4899 32 1 6.3485 2.4068 -0.1936 33 1 5.8277 3.3467 1.2329 34 1 5.0667 2.7624 -1.8594 35 1 6.1123 4.7272 -0.2312 36 1 6.3501 4.7196 -1.9951 37 1 5.7448 6.1843 -1.1846 38 1 4.0260 8.2755 -2.1695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308964141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = -47.977510 kcal Electronic energy + Delta-G solvation = -17974.266653 eV Core-core repulsion = 15236.964934 eV Total energy + Delta-G solvation = -2737.301719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75716 -37.49957 -34.78075 -34.25885 -31.98752 -29.53100 -28.56648 -26.38910 -25.54231 -24.83125 -21.45329 -20.19718 -19.98850 -19.51109 -17.28173 -16.24132 -15.51597 -15.27032 -14.72587 -14.61111 -14.39796 -13.43195 -13.25968 -12.98002 -12.54444 -12.44880 -12.21753 -12.07578 -11.69184 -11.47342 -11.19553 -10.89469 -10.75160 -10.61819 -10.53668 -10.33724 -10.14419 -9.97141 -9.68595 -9.32042 -8.89401 -8.80369 -8.22720 -7.09354 -5.85756 -3.87555 3.09124 3.41200 3.46530 3.47563 3.50752 4.54294 4.75683 4.79181 4.90143 5.18794 5.45668 5.47009 5.48306 5.58121 5.63015 5.69197 5.80697 5.86813 5.93424 5.97353 6.02261 6.22342 6.35712 6.51153 6.60287 6.72706 6.84621 6.99762 7.23160 7.53642 7.72664 7.86444 8.01970 8.42664 8.63968 8.70737 8.77382 9.18884 9.76645 11.21520 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.007179 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.814813 B = 3899.406244 C = 4847.178436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.746 5.746 3 C 0.522 3.478 4 O -0.513 6.513 5 C -0.105 4.105 6 H 0.099 0.901 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.154 4.154 10 C 0.108 3.892 11 H 0.088 0.912 12 N -0.672 5.672 13 C 0.215 3.785 14 H 0.035 0.965 15 C -0.171 4.171 16 C -0.489 4.489 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.396 0.604 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.322 0.678 35 H 0.010 0.990 36 H 0.024 0.976 37 H 0.086 0.914 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -16.412 6.757 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.400 5.400 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.127 4.127 6 H 0.118 0.882 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.193 4.193 10 C -0.004 4.004 11 H 0.106 0.894 12 N -0.299 5.299 13 C 0.108 3.892 14 H 0.053 0.947 15 C -0.230 4.230 16 C -0.528 4.528 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.201 1.201 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.798 -15.426 6.651 16.818 hybrid contribution 0.788 0.150 -0.581 0.991 sum -0.010 -15.276 6.070 16.438 Atomic orbital electron populations 1.21445 0.80415 1.01389 1.02232 1.45867 1.07260 1.08791 1.78057 1.20561 0.90028 0.83257 0.75365 1.90764 1.70019 1.31060 1.46749 1.22309 0.91112 1.00361 0.98897 0.88245 1.22295 0.96842 0.99487 0.96429 1.22066 0.96209 0.97405 1.00097 1.23070 0.99395 0.97138 0.99737 1.22222 0.93239 0.92782 0.92175 0.89390 1.60700 1.46504 1.11270 1.11460 1.19156 0.91968 0.80506 0.97575 0.94738 1.22535 0.99184 1.05310 0.95979 1.21173 1.40094 0.91091 1.00409 0.92184 1.24932 0.95890 0.96936 0.96875 1.69891 1.48639 1.01935 1.33489 0.86535 0.79006 0.77916 0.84130 1.20839 1.21509 1.20060 0.91322 0.92669 0.92357 0.77111 0.91519 0.91465 0.92011 0.92064 0.91684 0.91651 0.86080 0.97065 0.95636 0.89537 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.70 59.85 0.64 1.62 16 2 N -0.75 -9.00 5.71 -67.08 -0.38 -9.38 16 3 C 0.52 8.69 7.13 -10.99 -0.08 8.62 16 4 O -0.51 -11.40 15.73 5.56 0.09 -11.31 16 5 C -0.10 -1.54 2.96 -89.80 -0.27 -1.81 16 6 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.11 -1.27 6.26 -25.08 -0.16 -1.43 16 8 C -0.12 -1.40 6.80 -25.62 -0.17 -1.58 16 9 C -0.15 -2.36 4.88 -25.62 -0.12 -2.48 16 10 C 0.11 2.00 2.23 -66.07 -0.15 1.85 16 11 H 0.09 1.92 6.81 -51.93 -0.35 1.57 16 12 N -0.67 -14.81 6.11 -99.23 -0.61 -15.41 16 13 C 0.22 5.68 2.57 -68.87 -0.18 5.51 16 14 H 0.03 1.03 7.47 -51.93 -0.39 0.65 16 15 C -0.17 -4.19 8.73 37.15 0.32 -3.87 16 16 C -0.49 -14.29 8.84 -34.44 -0.30 -14.59 16 17 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 18 C 0.05 1.56 5.30 -17.82 -0.09 1.47 16 19 N -0.90 -26.91 11.32 55.43 0.63 -26.28 16 20 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 21 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.40 3.36 8.83 -40.82 -0.36 3.00 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.00 7.57 -51.93 -0.39 0.60 16 33 H 0.06 1.06 7.38 -51.93 -0.38 0.68 16 34 H 0.32 6.59 7.89 -39.29 -0.31 6.28 16 35 H 0.01 0.23 5.87 -51.92 -0.30 -0.07 16 36 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -33.60 303.33 -7.44 -41.04 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.15 Total: 5.90 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.56 Total: -6.70 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.36 Total: -51.08 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.60 -7.44 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.938 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds