Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 120.00065 * 2 1 4 4 O 1.21276 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00265 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.81591 * 56.66157 * 5 3 2 7 7 C 1.54886 * 110.75889 * 293.32847 * 5 3 2 8 8 C 1.54261 * 104.19820 * 203.74044 * 7 5 3 9 9 C 1.53875 * 106.59738 * 23.60911 * 8 7 5 10 10 C 1.54258 * 106.59955 * 359.97438 * 9 8 7 11 11 H 1.09001 * 110.49171 * 95.20280 * 10 9 8 12 12 N 1.46906 * 110.48750 * 217.71181 * 10 9 8 13 13 C 1.46895 * 110.99811 * 273.54670 * 12 10 9 14 14 H 1.09000 * 109.47628 * 324.99332 * 13 12 10 15 15 C 1.52994 * 109.47308 * 85.00322 * 13 12 10 16 16 C 1.50707 * 109.47005 * 205.00012 * 13 12 10 17 17 H 1.08004 * 119.99517 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00408 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99588 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00242 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47073 * 89.99820 * 20 18 16 22 22 H 1.48499 * 109.46931 * 209.99440 * 20 18 16 23 23 H 1.48491 * 109.46943 * 329.99726 * 20 18 16 24 24 H 1.09000 * 109.46678 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46969 * 299.99793 * 1 2 3 26 26 H 1.08997 * 109.46968 * 60.00608 * 1 2 3 27 27 H 0.97003 * 119.99808 * 179.97438 * 2 1 3 28 28 H 1.09003 * 110.48915 * 85.05755 * 7 5 3 29 29 H 1.09002 * 110.59509 * 322.47717 * 7 5 3 30 30 H 1.09000 * 110.03604 * 264.32098 * 8 7 5 31 31 H 1.09006 * 110.07502 * 142.91239 * 8 7 5 32 32 H 1.08997 * 110.02964 * 240.71317 * 9 8 7 33 33 H 1.09001 * 110.07432 * 119.30779 * 9 8 7 34 34 H 1.00901 * 110.99484 * 37.50246 * 12 10 9 35 35 H 1.09008 * 109.47100 * 299.99263 * 15 13 12 36 36 H 1.08994 * 109.47860 * 59.99312 * 15 13 12 37 37 H 1.09004 * 109.47597 * 180.02562 * 15 13 12 38 38 H 0.96997 * 119.99974 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0336 0.6071 -0.8504 7 6 4.1943 0.5940 1.3308 8 6 5.6084 1.1990 1.4490 9 6 5.6087 2.4844 0.6031 10 6 4.1950 2.6153 -0.0001 11 1 3.5735 3.2607 0.6207 12 7 4.2674 3.1377 -1.3712 13 6 4.2904 4.6065 -1.3744 14 1 3.6679 4.9814 -0.5619 15 6 5.7277 5.0944 -1.1827 16 6 3.7587 5.1144 -2.6899 17 1 3.4364 4.4158 -3.4479 18 6 3.6847 6.4707 -2.9262 19 7 4.0777 7.3213 -2.0032 20 14 3.0263 7.1002 -4.5570 21 1 1.5567 7.2888 -4.4579 22 1 3.6710 8.3975 -4.8834 23 1 3.3279 6.1147 -5.6260 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 4.2474 -0.4937 1.2845 29 1 3.5732 0.9093 2.1692 30 1 6.3481 0.4977 1.0629 31 1 5.8278 1.4370 2.4899 32 1 6.3485 2.4068 -0.1936 33 1 5.8277 3.3467 1.2329 34 1 5.0667 2.7624 -1.8594 35 1 6.1123 4.7272 -0.2312 36 1 6.3501 4.7196 -1.9951 37 1 5.7448 6.1843 -1.1846 38 1 4.0260 8.2755 -2.1695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308964141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = -74.217379 kcal Electronic energy + Delta-G solvation = -17975.404500 eV Core-core repulsion = 15236.964934 eV Total energy + Delta-G solvation = -2738.439565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05851 -38.90996 -36.54925 -35.49881 -34.00399 -30.74189 -30.29699 -27.63435 -27.08820 -26.76096 -22.67515 -22.22803 -21.13316 -20.84160 -18.65238 -18.15646 -16.93605 -16.75021 -16.48608 -15.84928 -15.69517 -15.08205 -14.58273 -14.36744 -14.32631 -13.87208 -13.60674 -13.29877 -13.17426 -13.00280 -12.85849 -12.82177 -12.33324 -12.25925 -12.10410 -11.93619 -11.81333 -11.56685 -11.31536 -10.88856 -10.67045 -10.48208 -10.03117 -8.85887 -8.09238 -6.20338 1.38509 1.40930 1.51177 1.80673 2.40583 2.43598 3.18135 3.52706 3.63364 3.79497 4.12778 4.31968 4.50185 4.50703 4.55699 4.57336 4.64602 4.69167 4.79407 4.81244 4.93503 4.97528 5.06181 5.10779 5.21248 5.25102 5.34617 5.45297 5.49397 5.57083 5.70666 5.85295 6.30455 6.69276 6.72344 6.89458 7.02060 7.46197 7.49326 8.96427 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.007179 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.814813 B = 3899.406244 C = 4847.178436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.514 3.486 4 O -0.584 6.584 5 C -0.097 4.097 6 H 0.120 0.880 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.149 4.149 10 C 0.100 3.900 11 H 0.040 0.960 12 N -0.679 5.679 13 C 0.224 3.776 14 H -0.016 1.016 15 C -0.154 4.154 16 C -0.514 4.514 17 H 0.050 0.950 18 C 0.004 3.996 19 N -0.925 5.925 20 Si 0.961 3.039 21 H -0.283 1.283 22 H -0.278 1.278 23 H -0.266 1.266 24 H 0.117 0.883 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.419 0.581 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.332 0.668 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -19.396 6.560 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.377 5.377 3 C 0.301 3.699 4 O -0.462 6.462 5 C -0.119 4.119 6 H 0.138 0.862 7 C -0.139 4.139 8 C -0.149 4.149 9 C -0.189 4.189 10 C -0.012 4.012 11 H 0.059 0.941 12 N -0.307 5.307 13 C 0.116 3.884 14 H 0.002 0.998 15 C -0.213 4.213 16 C -0.553 4.553 17 H 0.068 0.932 18 C -0.193 4.193 19 N -0.565 5.565 20 Si 0.787 3.213 21 H -0.209 1.209 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.135 0.865 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.256 0.744 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.111 -18.499 6.467 19.597 hybrid contribution 0.455 1.034 -0.471 1.224 sum 0.566 -17.464 5.996 18.474 Atomic orbital electron populations 1.21596 0.79557 1.04025 1.00689 1.45689 1.07911 1.08444 1.75696 1.21011 0.91015 0.83420 0.74437 1.90746 1.71370 1.33761 1.50350 1.22280 0.89885 0.97829 1.01935 0.86172 1.22318 0.95970 1.01950 0.93653 1.22048 0.97140 0.95592 1.00079 1.22945 0.96833 0.99005 1.00116 1.22214 0.94974 0.94299 0.89670 0.94109 1.60547 1.47242 1.08650 1.14277 1.18821 0.91828 0.83252 0.94546 0.99831 1.22295 0.98311 1.03125 0.97576 1.21494 1.40892 0.91561 1.01328 0.93158 1.25764 0.95992 0.97103 1.00473 1.70031 1.49081 1.02178 1.35230 0.85509 0.78095 0.77735 0.79975 1.20872 1.20350 1.19051 0.86470 0.93727 0.94549 0.74441 0.86999 0.92255 0.89135 0.90890 0.91239 0.93377 0.84942 0.94693 0.94707 0.92585 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.75 10.70 127.77 1.37 3.11 16 2 N -0.72 -15.97 5.71 -484.53 -2.77 -18.74 16 3 C 0.51 17.03 7.13 87.65 0.63 17.66 16 4 O -0.58 -27.35 15.73 -3.02 -0.05 -27.40 16 5 C -0.10 -2.72 2.96 -10.26 -0.03 -2.75 16 6 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 7 C -0.10 -1.93 6.26 31.67 0.20 -1.73 16 8 C -0.11 -2.19 6.80 31.32 0.21 -1.98 16 9 C -0.15 -4.43 4.88 31.32 0.15 -4.28 16 10 C 0.10 3.79 2.23 45.98 0.10 3.89 16 11 H 0.04 1.93 6.81 -2.39 -0.02 1.91 16 12 N -0.68 -30.76 6.11 -467.87 -2.86 -33.62 16 13 C 0.22 12.40 2.57 44.17 0.11 12.52 16 14 H -0.02 -1.05 7.47 -2.39 -0.02 -1.07 16 15 C -0.15 -7.75 8.73 71.98 0.63 -7.12 16 16 C -0.51 -31.10 8.84 25.60 0.23 -30.87 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.00 0.25 5.30 84.65 0.45 0.70 16 19 N -0.92 -57.07 11.32 21.45 0.24 -56.82 16 20 Si 0.96 47.08 29.54 68.60 2.03 49.11 16 21 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.42 5.44 8.83 -92.71 -0.82 4.62 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.07 2.00 7.57 -2.39 -0.02 1.98 16 33 H 0.05 1.56 7.38 -2.39 -0.02 1.55 16 34 H 0.33 13.56 7.89 -89.69 -0.71 12.86 16 35 H 0.03 1.54 5.87 -2.38 -0.01 1.52 16 36 H 0.03 1.64 8.13 -2.39 -0.02 1.62 16 37 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -79.06 303.33 0.17 -78.89 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.47 Total: 19.45 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.05 Total: -10.86 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.38 Total: -109.19 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.06 0.17 -78.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.675 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds