Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99720 * 2 1 4 4 O 1.21288 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99911 * 180.02562 * 3 2 1 6 6 H 1.09005 * 110.66972 * 61.78816 * 5 3 2 7 7 C 1.54888 * 110.75894 * 298.55303 * 5 3 2 8 8 C 1.54261 * 104.19672 * 203.55764 * 7 5 3 9 9 C 1.53876 * 106.59990 * 23.60631 * 8 7 5 10 10 C 1.54267 * 106.59870 * 0.02562 * 9 8 7 11 11 H 1.09004 * 110.48597 * 95.06674 * 10 9 8 12 12 N 1.46895 * 110.48735 * 217.71153 * 10 9 8 13 13 C 1.46901 * 111.00016 * 273.54329 * 12 10 9 14 14 H 1.09004 * 109.46692 * 35.00342 * 13 12 10 15 15 C 1.53001 * 109.47318 * 274.99828 * 13 12 10 16 16 C 1.50699 * 109.47312 * 154.99834 * 13 12 10 17 17 H 1.08001 * 119.99591 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00336 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00094 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00256 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47058 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47158 * 209.99926 * 20 18 16 23 23 H 1.48493 * 109.46988 * 329.99800 * 20 18 16 24 24 H 1.09005 * 109.46551 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46711 * 299.99376 * 1 2 3 26 26 H 1.08996 * 109.47199 * 59.99479 * 1 2 3 27 27 H 0.96997 * 119.99991 * 180.02562 * 2 1 3 28 28 H 1.09000 * 110.48622 * 84.87547 * 7 5 3 29 29 H 1.09001 * 110.59737 * 322.29191 * 7 5 3 30 30 H 1.08998 * 110.03492 * 264.32506 * 8 7 5 31 31 H 1.08999 * 110.07717 * 142.91216 * 8 7 5 32 32 H 1.08995 * 110.03160 * 119.28453 * 9 8 7 33 33 H 1.08998 * 110.03319 * 240.71542 * 9 8 7 34 34 H 1.00901 * 111.00420 * 149.59196 * 12 10 9 35 35 H 1.09002 * 109.46683 * 60.00482 * 15 13 12 36 36 H 1.09000 * 109.47231 * 179.97438 * 15 13 12 37 37 H 1.08995 * 109.47210 * 300.00295 * 15 13 12 38 38 H 0.96998 * 120.00732 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0303 0.6853 -0.8996 7 6 4.1954 0.4747 1.2712 8 6 5.6114 1.0629 1.4404 9 6 5.6136 2.4194 0.7141 10 6 4.1986 2.6086 0.1293 11 1 3.5803 3.1951 0.8089 12 7 4.2690 3.2525 -1.1891 13 6 4.2968 4.7155 -1.0597 14 1 4.8554 4.9905 -0.1649 15 6 2.8655 5.2451 -0.9503 16 6 4.9628 5.3145 -2.2715 17 1 5.3285 4.6725 -3.0593 18 6 5.1053 6.6819 -2.3746 19 7 4.6604 7.4636 -1.4151 20 14 5.9302 7.4245 -3.8771 21 1 4.9071 7.7022 -4.9170 22 1 6.6052 8.6911 -3.4960 23 1 6.9341 6.4704 -4.4128 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 4.2453 -0.6045 1.1266 29 1 3.5768 0.7145 2.1361 30 1 6.3483 0.3975 0.9908 31 1 5.8334 1.2053 2.4980 32 1 5.8359 3.2202 1.4193 33 1 6.3516 2.4123 -0.0880 34 1 3.5049 2.9560 -1.7776 35 1 2.3838 4.8119 -0.0737 36 1 2.8861 6.3306 -0.8538 37 1 2.3070 4.9700 -1.8450 38 1 4.7610 8.4257 -1.4873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308964142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = -50.632605 kcal Electronic energy + Delta-G solvation = -17996.579337 eV Core-core repulsion = 15259.162484 eV Total energy + Delta-G solvation = -2737.416853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93630 -37.37999 -34.86978 -34.41154 -31.97320 -29.56539 -28.59635 -26.39723 -25.40243 -24.89875 -21.62477 -20.60390 -19.72220 -19.01629 -17.37467 -16.33240 -15.64195 -15.47854 -14.87921 -14.59267 -14.34486 -13.56791 -13.25862 -13.17963 -12.68298 -12.38311 -12.33882 -12.03548 -11.70851 -11.21906 -10.99735 -10.90518 -10.80615 -10.59562 -10.49663 -10.28503 -10.05084 -9.89189 -9.68119 -9.50925 -9.09217 -8.78871 -8.23362 -7.08393 -5.85529 -3.88432 2.83535 3.29707 3.39775 3.45498 3.50043 4.53358 4.67219 4.76848 4.89693 5.08891 5.39024 5.43699 5.45173 5.47529 5.62299 5.71136 5.75498 5.78432 5.92700 5.96970 6.27003 6.30046 6.41584 6.51747 6.67878 6.86299 6.99254 7.18568 7.36679 7.52013 7.60167 7.93295 8.04801 8.38188 8.45173 8.70133 8.79229 9.18605 9.76017 11.21428 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.006395 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.415747 B = 4377.685221 C = 4941.869995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.742 5.742 3 C 0.514 3.486 4 O -0.523 6.523 5 C -0.119 4.119 6 H 0.108 0.892 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.116 4.116 10 C 0.106 3.894 11 H 0.052 0.948 12 N -0.674 5.674 13 C 0.214 3.786 14 H 0.031 0.969 15 C -0.163 4.163 16 C -0.492 4.492 17 H 0.060 0.940 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.399 0.601 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.325 0.675 35 H 0.013 0.987 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -17.158 5.370 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.301 3.699 4 O -0.397 6.397 5 C -0.141 4.141 6 H 0.126 0.874 7 C -0.147 4.147 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.005 4.005 11 H 0.070 0.930 12 N -0.303 5.303 13 C 0.106 3.894 14 H 0.049 0.951 15 C -0.222 4.222 16 C -0.531 4.531 17 H 0.079 0.921 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.200 1.200 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.232 0.768 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.254 -16.218 5.368 17.391 hybrid contribution -0.450 0.252 -0.560 0.762 sum -3.704 -15.967 4.808 17.081 Atomic orbital electron populations 1.21480 0.80197 1.01653 1.02277 1.45857 1.07401 1.08832 1.77352 1.20824 0.90325 0.83417 0.75339 1.90773 1.70255 1.31053 1.47633 1.22550 0.90354 1.00571 1.00609 0.87397 1.22249 0.97232 0.98962 0.96293 1.22095 0.95831 0.97487 1.00375 1.22187 0.98137 0.95433 0.99637 1.22082 0.94343 0.90463 0.93641 0.93043 1.61024 1.49032 1.10584 1.09702 1.19145 0.92265 0.80764 0.97225 0.95075 1.22335 0.98536 1.04429 0.96906 1.21180 1.36318 0.91014 1.04560 0.92142 1.24947 0.96065 0.97226 0.96372 1.69908 1.47326 1.03885 1.32626 0.86545 0.79519 0.78445 0.83122 1.20961 1.21472 1.19966 0.91089 0.92505 0.92347 0.76804 0.91507 0.91579 0.91796 0.92085 0.92194 0.90212 0.85851 0.96805 0.89918 0.95806 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 59.85 0.64 1.50 16 2 N -0.74 -8.03 5.66 -67.07 -0.38 -8.41 16 3 C 0.51 7.86 7.11 -10.99 -0.08 7.78 16 4 O -0.52 -10.54 15.81 5.55 0.09 -10.45 16 5 C -0.12 -1.71 2.69 -89.76 -0.24 -1.95 16 6 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.11 -1.23 6.21 -25.08 -0.16 -1.38 16 8 C -0.12 -1.47 6.80 -25.61 -0.17 -1.64 16 9 C -0.12 -1.93 6.35 -25.61 -0.16 -2.09 16 10 C 0.11 1.99 1.99 -66.04 -0.13 1.86 16 11 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 12 N -0.67 -15.09 6.02 -99.20 -0.60 -15.69 16 13 C 0.21 5.71 2.44 -68.86 -0.17 5.54 16 14 H 0.03 0.91 7.74 -51.93 -0.40 0.51 16 15 C -0.16 -4.37 8.92 37.16 0.33 -4.04 16 16 C -0.49 -14.20 8.84 -34.44 -0.30 -14.50 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.05 1.56 5.30 -17.82 -0.09 1.47 16 19 N -0.90 -26.85 11.32 55.43 0.63 -26.22 16 20 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.40 2.99 8.82 -40.82 -0.36 2.63 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 34 H 0.32 7.31 8.17 -39.29 -0.32 6.99 16 35 H 0.01 0.34 7.45 -51.93 -0.39 -0.05 16 36 H 0.08 2.41 6.07 -51.93 -0.32 2.09 16 37 H 0.02 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -32.91 307.38 -7.50 -40.41 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.31 Total: 5.98 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.54 Total: -7.47 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.35 Total: -50.32 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.91 -7.50 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.224 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds