Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99720 * 2 1 4 4 O 1.21288 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99911 * 180.02562 * 3 2 1 6 6 H 1.09005 * 110.66972 * 61.78816 * 5 3 2 7 7 C 1.54888 * 110.75894 * 298.55303 * 5 3 2 8 8 C 1.54261 * 104.19672 * 203.55764 * 7 5 3 9 9 C 1.53876 * 106.59990 * 23.60631 * 8 7 5 10 10 C 1.54267 * 106.59870 * 0.02562 * 9 8 7 11 11 H 1.09004 * 110.48597 * 95.06674 * 10 9 8 12 12 N 1.46895 * 110.48735 * 217.71153 * 10 9 8 13 13 C 1.46901 * 111.00016 * 273.54329 * 12 10 9 14 14 H 1.09004 * 109.46692 * 35.00342 * 13 12 10 15 15 C 1.53001 * 109.47318 * 274.99828 * 13 12 10 16 16 C 1.50699 * 109.47312 * 154.99834 * 13 12 10 17 17 H 1.08001 * 119.99591 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00336 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00094 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00256 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47058 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47158 * 209.99926 * 20 18 16 23 23 H 1.48493 * 109.46988 * 329.99800 * 20 18 16 24 24 H 1.09005 * 109.46551 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46711 * 299.99376 * 1 2 3 26 26 H 1.08996 * 109.47199 * 59.99479 * 1 2 3 27 27 H 0.96997 * 119.99991 * 180.02562 * 2 1 3 28 28 H 1.09000 * 110.48622 * 84.87547 * 7 5 3 29 29 H 1.09001 * 110.59737 * 322.29191 * 7 5 3 30 30 H 1.08998 * 110.03492 * 264.32506 * 8 7 5 31 31 H 1.08999 * 110.07717 * 142.91216 * 8 7 5 32 32 H 1.08995 * 110.03160 * 119.28453 * 9 8 7 33 33 H 1.08998 * 110.03319 * 240.71542 * 9 8 7 34 34 H 1.00901 * 111.00420 * 149.59196 * 12 10 9 35 35 H 1.09002 * 109.46683 * 60.00482 * 15 13 12 36 36 H 1.09000 * 109.47231 * 179.97438 * 15 13 12 37 37 H 1.08995 * 109.47210 * 300.00295 * 15 13 12 38 38 H 0.96998 * 120.00732 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0303 0.6853 -0.8996 7 6 4.1954 0.4747 1.2712 8 6 5.6114 1.0629 1.4404 9 6 5.6136 2.4194 0.7141 10 6 4.1986 2.6086 0.1293 11 1 3.5803 3.1951 0.8089 12 7 4.2690 3.2525 -1.1891 13 6 4.2968 4.7155 -1.0597 14 1 4.8554 4.9905 -0.1649 15 6 2.8655 5.2451 -0.9503 16 6 4.9628 5.3145 -2.2715 17 1 5.3285 4.6725 -3.0593 18 6 5.1053 6.6819 -2.3746 19 7 4.6604 7.4636 -1.4151 20 14 5.9302 7.4245 -3.8771 21 1 4.9071 7.7022 -4.9170 22 1 6.6052 8.6911 -3.4960 23 1 6.9341 6.4704 -4.4128 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 4.2453 -0.6045 1.1266 29 1 3.5768 0.7145 2.1361 30 1 6.3483 0.3975 0.9908 31 1 5.8334 1.2053 2.4980 32 1 5.8359 3.2202 1.4193 33 1 6.3516 2.4123 -0.0880 34 1 3.5049 2.9560 -1.7776 35 1 2.3838 4.8119 -0.0737 36 1 2.8861 6.3306 -0.8538 37 1 2.3070 4.9700 -1.8450 38 1 4.7610 8.4257 -1.4873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308964142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = -75.707899 kcal Electronic energy + Delta-G solvation = -17997.666683 eV Core-core repulsion = 15259.162484 eV Total energy + Delta-G solvation = -2738.504199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16708 -38.75531 -36.65538 -35.57800 -34.00119 -30.75241 -30.38500 -27.42992 -27.28040 -26.76853 -22.79584 -22.44561 -20.94347 -20.50562 -18.63167 -18.25622 -17.02014 -16.84501 -16.58282 -16.03022 -15.51264 -15.15064 -14.73919 -14.41028 -14.39075 -13.90638 -13.71165 -13.22193 -13.09281 -13.03026 -12.83579 -12.78546 -12.33246 -12.20462 -12.01584 -11.99030 -11.87384 -11.47758 -11.25724 -10.97878 -10.76762 -10.48554 -10.10179 -8.97880 -8.08294 -6.20502 1.42352 1.43647 1.55078 1.66012 2.31612 2.44728 3.19304 3.48125 3.61500 3.72911 4.03305 4.30670 4.49372 4.51980 4.53423 4.58666 4.62640 4.72796 4.79546 4.82903 4.93198 4.95653 5.07330 5.10801 5.23223 5.24453 5.35556 5.45828 5.49088 5.54618 5.66903 5.83385 6.28207 6.59067 6.65795 6.82863 6.94242 7.32903 7.49220 8.98006 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.006395 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.415747 B = 4377.685221 C = 4941.869995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.719 5.719 3 C 0.510 3.490 4 O -0.583 6.583 5 C -0.110 4.110 6 H 0.125 0.875 7 C -0.098 4.098 8 C -0.110 4.110 9 C -0.116 4.116 10 C 0.097 3.903 11 H 0.014 0.986 12 N -0.669 5.669 13 C 0.222 3.778 14 H -0.002 1.002 15 C -0.143 4.143 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.004 3.996 19 N -0.927 5.927 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.266 1.266 24 H 0.116 0.884 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.420 0.580 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.323 0.677 35 H 0.012 0.988 36 H 0.058 0.942 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -20.024 4.955 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.297 3.703 4 O -0.462 6.462 5 C -0.131 4.131 6 H 0.143 0.857 7 C -0.136 4.136 8 C -0.148 4.148 9 C -0.155 4.155 10 C -0.014 4.014 11 H 0.032 0.968 12 N -0.297 5.297 13 C 0.113 3.887 14 H 0.016 0.984 15 C -0.202 4.202 16 C -0.552 4.552 17 H 0.076 0.924 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.135 0.865 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.257 0.743 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.672 -19.168 4.963 19.980 hybrid contribution -0.674 1.117 -0.387 1.361 sum -3.346 -18.051 4.577 18.921 Atomic orbital electron populations 1.21636 0.79206 1.04181 1.00924 1.45673 1.08065 1.08393 1.75017 1.21017 0.90761 0.83741 0.74778 1.90757 1.71291 1.33416 1.50782 1.22473 0.89946 0.97493 1.03214 0.85717 1.22284 0.95861 1.01260 0.94175 1.22063 0.97314 0.94716 1.00704 1.22157 0.96118 0.98062 0.99122 1.22175 0.95598 0.92747 0.90911 0.96817 1.60961 1.48756 1.08071 1.11923 1.18856 0.91144 0.83479 0.95178 0.98436 1.22115 0.98943 1.02596 0.96554 1.21458 1.37009 0.91633 1.05095 0.92435 1.25821 0.96496 0.97601 0.99455 1.70050 1.47997 1.04186 1.34474 0.85430 0.78593 0.77610 0.79191 1.20258 1.20862 1.19060 0.86529 0.93693 0.94001 0.74300 0.86791 0.91847 0.89349 0.90713 0.94296 0.91667 0.86089 0.96875 0.92325 0.96166 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.70 127.77 1.37 2.83 16 2 N -0.72 -13.66 5.66 -484.50 -2.74 -16.41 16 3 C 0.51 15.12 7.11 87.66 0.62 15.74 16 4 O -0.58 -24.21 15.81 -3.05 -0.05 -24.26 16 5 C -0.11 -2.96 2.69 -10.24 -0.03 -2.99 16 6 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 7 C -0.10 -1.85 6.21 31.67 0.20 -1.65 16 8 C -0.11 -2.39 6.80 31.32 0.21 -2.17 16 9 C -0.12 -3.91 6.35 31.32 0.20 -3.71 16 10 C 0.10 3.73 1.99 46.00 0.09 3.82 16 11 H 0.01 0.64 6.61 -2.38 -0.02 0.62 16 12 N -0.67 -30.95 6.02 -467.77 -2.82 -33.77 16 13 C 0.22 12.44 2.44 44.17 0.11 12.55 16 14 H 0.00 -0.14 7.74 -2.38 -0.02 -0.16 16 15 C -0.14 -8.07 8.92 71.98 0.64 -7.43 16 16 C -0.51 -30.39 8.84 25.60 0.23 -30.17 16 17 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.00 0.22 5.30 84.65 0.45 0.67 16 19 N -0.93 -56.93 11.32 21.44 0.24 -56.69 16 20 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.42 4.46 8.82 -92.71 -0.82 3.64 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 34 H 0.32 14.95 8.17 -89.69 -0.73 14.21 16 35 H 0.01 0.69 7.45 -2.39 -0.02 0.67 16 36 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 37 H 0.02 1.09 8.13 -2.39 -0.02 1.07 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.80 307.38 0.25 -75.55 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.50 Total: 20.06 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.09 Total: -12.50 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -5.32 Total: -106.86 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.80 0.25 -75.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308964142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.159 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds