Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46696 * 2 1 4 4 C 1.50694 * 109.47736 * 239.99826 * 2 1 3 5 5 H 1.08000 * 120.00226 * 245.41793 * 4 2 1 6 6 C 1.37878 * 120.00073 * 65.13690 * 4 2 1 7 7 N 1.31511 * 119.99813 * 355.41100 * 6 4 2 8 8 Si 1.86798 * 120.00148 * 175.41269 * 6 4 2 9 9 H 1.48500 * 109.47337 * 94.99856 * 8 6 4 10 10 H 1.48502 * 109.47348 * 215.00316 * 8 6 4 11 11 H 1.48504 * 109.46920 * 334.99739 * 8 6 4 12 12 N 1.46501 * 109.47295 * 119.99175 * 2 1 3 13 13 C 1.34776 * 120.00417 * 275.00957 * 12 2 1 14 14 O 1.21286 * 119.99731 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00082 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47183 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47290 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.33637 * 54.29819 * 17 16 15 19 19 C 1.54908 * 110.37391 * 176.55364 * 17 16 15 20 20 C 1.55263 * 101.59588 * 155.81269 * 19 17 16 21 21 C 1.54311 * 103.08814 * 324.49018 * 20 19 17 22 22 N 1.47444 * 107.23500 * 22.20299 * 21 20 19 23 23 H 1.09005 * 109.46927 * 174.95075 * 1 2 3 24 24 H 1.09000 * 109.47719 * 294.95298 * 1 2 3 25 25 H 1.09002 * 109.47157 * 54.95069 * 1 2 3 26 26 H 0.97001 * 120.00076 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99783 * 94.99791 * 12 2 1 28 28 H 1.08993 * 109.47154 * 299.99395 * 15 13 12 29 29 H 1.09004 * 109.46931 * 59.99845 * 15 13 12 30 30 H 1.09006 * 109.47129 * 300.00214 * 16 15 13 31 31 H 1.09006 * 109.47408 * 59.99639 * 16 15 13 32 32 H 1.08995 * 110.98936 * 273.98635 * 19 17 16 33 33 H 1.09000 * 110.99091 * 37.80463 * 19 17 16 34 34 H 1.09007 * 110.73830 * 206.05217 * 20 19 17 35 35 H 1.08998 * 110.75486 * 82.93305 * 20 19 17 36 36 H 1.09011 * 109.88749 * 262.80030 * 21 20 19 37 37 H 1.09000 * 110.02784 * 141.69029 * 21 20 19 38 38 H 1.00900 * 111.00094 * 238.72532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5793 -1.6367 -1.1336 6 6 1.7890 -0.1809 -2.4799 7 7 1.0421 0.8944 -2.6042 8 14 2.5200 -0.9908 -3.9961 9 1 1.5264 -1.9228 -4.5872 10 1 2.8743 0.0520 -4.9923 11 1 3.7406 -1.7455 -3.6143 12 7 2.0183 -0.6904 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8587 1.1588 2.4115 15 6 2.6488 -0.7285 3.5878 16 6 2.7008 0.2549 4.7588 17 6 3.2109 -0.4662 6.0081 18 1 4.1655 -0.9505 5.8027 19 6 3.3540 0.5304 7.1854 20 6 3.2414 -0.4161 8.4110 21 6 2.2169 -1.4716 7.9444 22 7 2.2184 -1.4600 6.4700 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3634 0.4335 0.9317 25 1 -0.3633 0.5902 -0.8413 26 1 0.8711 1.2672 -3.4833 27 1 2.2490 -1.6316 1.1528 28 1 1.9759 -1.5502 3.8327 29 1 3.6480 -1.1209 3.3987 30 1 3.3739 1.0765 4.5137 31 1 1.7018 0.6478 4.9481 32 1 4.3241 1.0266 7.1610 33 1 2.5439 1.2595 7.1804 34 1 2.8696 0.1232 9.2823 35 1 4.2024 -0.8819 8.6289 36 1 1.2248 -1.2151 8.3162 37 1 2.5053 -2.4579 8.3078 38 1 1.3002 -1.2486 6.1091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308994741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = -60.557843 kcal Electronic energy + Delta-G solvation = -17113.843073 eV Core-core repulsion = 14375.995829 eV Total energy + Delta-G solvation = -2737.847243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26347 -38.40279 -34.80110 -33.05898 -32.27851 -30.15175 -29.36405 -27.80096 -25.22116 -23.75159 -21.25388 -20.92756 -20.35210 -19.25997 -17.08419 -16.28213 -15.94014 -15.27281 -15.15803 -14.95788 -14.19429 -13.88629 -13.58309 -13.04408 -12.90876 -12.37793 -12.32596 -11.79761 -11.65077 -11.46484 -11.42497 -11.11440 -10.91794 -10.89458 -10.83966 -10.71567 -10.64528 -10.28852 -10.24485 -8.97871 -8.90161 -8.58548 -8.56663 -7.82921 -6.10730 -4.18629 3.25699 3.32828 3.35704 3.50504 4.03795 4.17937 4.40432 4.52724 4.62415 4.84120 5.09412 5.21062 5.22221 5.25480 5.34624 5.44210 5.61811 5.68601 5.74285 5.80193 5.84057 6.01287 6.02588 6.26487 6.38798 6.77530 6.85714 6.97233 7.18622 7.26190 7.51776 7.60095 7.74073 7.93150 8.14990 8.74233 8.82768 9.21537 9.49126 10.96355 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056980 B = 0.003981 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.278441 B = 7030.890689 C = 7138.986827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.711 5.711 13 C 0.497 3.503 14 O -0.561 6.561 15 C -0.137 4.137 16 C -0.104 4.104 17 C 0.077 3.923 18 H 0.087 0.913 19 C -0.151 4.151 20 C -0.142 4.142 21 C 0.046 3.954 22 N -0.682 5.682 23 H 0.028 0.972 24 H 0.013 0.987 25 H 0.082 0.918 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -4.418 17.602 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.441 6.441 15 C -0.178 4.178 16 C -0.143 4.143 17 C -0.033 4.033 18 H 0.105 0.895 19 C -0.190 4.190 20 C -0.180 4.180 21 C -0.083 4.083 22 N -0.312 5.312 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.529 -4.023 17.376 18.181 hybrid contribution -0.019 -0.057 -0.712 0.714 sum 3.511 -4.080 16.664 17.512 Atomic orbital electron populations 1.22050 0.98656 0.99615 0.99747 1.18727 0.90858 0.94085 0.80279 0.93312 1.21225 1.36431 1.09012 0.90549 0.92088 1.24901 0.94792 0.95027 0.99039 1.69937 1.36591 1.21618 1.23933 0.86449 0.79430 0.78975 0.82331 1.20653 1.21040 1.19793 1.46546 1.65086 1.13547 1.10681 1.20591 0.78564 0.87561 0.85020 1.90639 1.51743 1.16342 1.85413 1.21635 1.02997 0.99535 0.93597 1.21556 1.02436 0.97785 0.92505 1.22615 0.96644 0.90402 0.93595 0.89528 1.23213 1.02625 0.98158 0.94973 1.22788 1.00031 0.97094 0.98086 1.22614 0.98260 0.99060 0.88399 1.61872 1.10983 1.50854 1.07446 0.95314 0.96754 0.89932 0.92639 0.77952 0.89097 0.89551 0.90504 0.91335 0.90689 0.91186 0.91306 0.91141 0.93196 0.90952 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.25 37.16 0.34 -3.25 16 2 C 0.26 6.81 2.51 -69.09 -0.17 6.64 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.38 8.67 -34.44 -0.30 -14.68 16 5 H 0.06 1.57 7.72 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.36 -17.82 -0.10 1.70 16 7 N -0.88 -25.29 11.58 55.43 0.64 -24.65 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -15.04 5.07 -54.94 -0.28 -15.32 16 13 C 0.50 9.92 7.79 -10.99 -0.09 9.84 16 14 O -0.56 -13.49 15.65 5.55 0.09 -13.40 16 15 C -0.14 -1.94 5.62 -27.88 -0.16 -2.10 16 16 C -0.10 -1.35 3.87 -26.73 -0.10 -1.46 16 17 C 0.08 0.82 3.36 -66.19 -0.22 0.59 16 18 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.15 -1.41 6.51 -24.53 -0.16 -1.57 16 20 C -0.14 -1.16 6.94 -24.85 -0.17 -1.33 16 21 C 0.05 0.41 7.58 -2.84 -0.02 0.38 16 22 N -0.68 -7.10 6.95 -103.84 -0.72 -7.82 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 2.26 6.45 -51.93 -0.33 1.92 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.39 7.12 8.53 -40.82 -0.35 6.77 16 28 H 0.09 1.16 7.87 -51.93 -0.41 0.75 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 0.95 7.98 -51.93 -0.41 0.54 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.34 3.52 8.27 -39.29 -0.33 3.19 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -30.66 309.71 -8.18 -38.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.41 Total: 7.07 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.15 Total: -5.22 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.36 Total: -47.79 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.66 -8.18 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.720 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds