Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46696 * 2 1 4 4 C 1.50694 * 109.47736 * 239.99826 * 2 1 3 5 5 H 1.08000 * 120.00226 * 245.41793 * 4 2 1 6 6 C 1.37878 * 120.00073 * 65.13690 * 4 2 1 7 7 N 1.31511 * 119.99813 * 355.41100 * 6 4 2 8 8 Si 1.86798 * 120.00148 * 175.41269 * 6 4 2 9 9 H 1.48500 * 109.47337 * 94.99856 * 8 6 4 10 10 H 1.48502 * 109.47348 * 215.00316 * 8 6 4 11 11 H 1.48504 * 109.46920 * 334.99739 * 8 6 4 12 12 N 1.46501 * 109.47295 * 119.99175 * 2 1 3 13 13 C 1.34776 * 120.00417 * 275.00957 * 12 2 1 14 14 O 1.21286 * 119.99731 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00082 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47183 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47290 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.33637 * 54.29819 * 17 16 15 19 19 C 1.54908 * 110.37391 * 176.55364 * 17 16 15 20 20 C 1.55263 * 101.59588 * 155.81269 * 19 17 16 21 21 C 1.54311 * 103.08814 * 324.49018 * 20 19 17 22 22 N 1.47444 * 107.23500 * 22.20299 * 21 20 19 23 23 H 1.09005 * 109.46927 * 174.95075 * 1 2 3 24 24 H 1.09000 * 109.47719 * 294.95298 * 1 2 3 25 25 H 1.09002 * 109.47157 * 54.95069 * 1 2 3 26 26 H 0.97001 * 120.00076 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99783 * 94.99791 * 12 2 1 28 28 H 1.08993 * 109.47154 * 299.99395 * 15 13 12 29 29 H 1.09004 * 109.46931 * 59.99845 * 15 13 12 30 30 H 1.09006 * 109.47129 * 300.00214 * 16 15 13 31 31 H 1.09006 * 109.47408 * 59.99639 * 16 15 13 32 32 H 1.08995 * 110.98936 * 273.98635 * 19 17 16 33 33 H 1.09000 * 110.99091 * 37.80463 * 19 17 16 34 34 H 1.09007 * 110.73830 * 206.05217 * 20 19 17 35 35 H 1.08998 * 110.75486 * 82.93305 * 20 19 17 36 36 H 1.09011 * 109.88749 * 262.80030 * 21 20 19 37 37 H 1.09000 * 110.02784 * 141.69029 * 21 20 19 38 38 H 1.00900 * 111.00094 * 238.72532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5793 -1.6367 -1.1336 6 6 1.7890 -0.1809 -2.4799 7 7 1.0421 0.8944 -2.6042 8 14 2.5200 -0.9908 -3.9961 9 1 1.5264 -1.9228 -4.5872 10 1 2.8743 0.0520 -4.9923 11 1 3.7406 -1.7455 -3.6143 12 7 2.0183 -0.6904 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8587 1.1588 2.4115 15 6 2.6488 -0.7285 3.5878 16 6 2.7008 0.2549 4.7588 17 6 3.2109 -0.4662 6.0081 18 1 4.1655 -0.9505 5.8027 19 6 3.3540 0.5304 7.1854 20 6 3.2414 -0.4161 8.4110 21 6 2.2169 -1.4716 7.9444 22 7 2.2184 -1.4600 6.4700 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3634 0.4335 0.9317 25 1 -0.3633 0.5902 -0.8413 26 1 0.8711 1.2672 -3.4833 27 1 2.2490 -1.6316 1.1528 28 1 1.9759 -1.5502 3.8327 29 1 3.6480 -1.1209 3.3987 30 1 3.3739 1.0765 4.5137 31 1 1.7018 0.6478 4.9481 32 1 4.3241 1.0266 7.1610 33 1 2.5439 1.2595 7.1804 34 1 2.8696 0.1232 9.2823 35 1 4.2024 -0.8819 8.6289 36 1 1.2248 -1.2151 8.3162 37 1 2.5053 -2.4579 8.3078 38 1 1.3002 -1.2486 6.1091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308994741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = -82.489537 kcal Electronic energy + Delta-G solvation = -17114.794102 eV Core-core repulsion = 14375.995829 eV Total energy + Delta-G solvation = -2738.798273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66381 -39.49604 -36.71794 -34.34758 -34.09514 -31.11225 -30.88573 -28.97604 -27.33165 -24.94555 -22.73160 -21.80740 -21.41418 -20.96754 -18.84404 -17.58921 -17.12755 -16.96597 -16.47006 -16.20493 -15.88096 -14.93119 -14.68085 -14.50763 -14.38624 -13.99112 -13.60807 -13.31685 -12.96677 -12.86148 -12.76645 -12.61367 -12.45256 -12.32281 -12.17911 -12.13444 -11.76235 -11.73270 -11.54824 -11.07477 -10.68692 -10.55208 -9.70129 -9.36103 -8.18680 -6.35000 1.44345 1.45664 1.56844 1.89378 2.36900 2.69898 3.12594 3.30383 3.76064 3.86258 3.94383 4.05419 4.22261 4.34158 4.54077 4.59331 4.62438 4.74697 4.82232 4.87084 4.91129 4.97515 5.07582 5.09483 5.11429 5.23387 5.26570 5.43022 5.44087 5.63961 5.67993 5.92095 6.00146 6.08130 6.47150 6.74144 7.01925 7.33252 7.61965 8.88856 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056980 B = 0.003981 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.278441 B = 7030.890689 C = 7138.986827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.267 3.733 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.607 6.607 15 C -0.120 4.120 16 C -0.098 4.098 17 C 0.084 3.916 18 H 0.091 0.909 19 C -0.152 4.152 20 C -0.136 4.136 21 C 0.043 3.957 22 N -0.689 5.689 23 H 0.041 0.959 24 H 0.013 0.987 25 H 0.057 0.943 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -6.426 18.494 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.164 3.836 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.357 5.357 13 C 0.280 3.720 14 O -0.490 6.490 15 C -0.160 4.160 16 C -0.136 4.136 17 C -0.025 4.025 18 H 0.109 0.891 19 C -0.191 4.191 20 C -0.175 4.175 21 C -0.086 4.086 22 N -0.319 5.319 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.539 -6.072 18.300 19.809 hybrid contribution -0.349 0.609 -0.943 1.176 sum 4.190 -5.463 17.357 18.673 Atomic orbital electron populations 1.21866 0.98434 0.99802 0.98596 1.18334 0.91015 0.91972 0.82327 0.98448 1.21562 1.36522 1.09488 0.90996 0.90783 1.25844 0.95007 0.95550 1.02393 1.70088 1.37781 1.23134 1.24707 0.85315 0.78946 0.77917 0.78051 1.19773 1.21209 1.18612 1.46336 1.65216 1.14267 1.09875 1.21630 0.77214 0.87140 0.86000 1.90621 1.53499 1.18679 1.86171 1.21608 1.04278 0.99534 0.90581 1.21484 1.01497 0.97376 0.93288 1.22515 0.96678 0.90622 0.92721 0.89075 1.23212 1.02753 0.98054 0.95072 1.22774 1.00239 0.96612 0.97829 1.22692 0.98958 0.99564 0.87421 1.61910 1.10861 1.50561 1.08573 0.93972 0.96787 0.92412 0.92596 0.75998 0.86927 0.87220 0.91944 0.92686 0.90063 0.91879 0.90153 0.90525 0.92497 0.90491 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.25 71.98 0.67 -5.94 16 2 C 0.27 14.15 2.51 44.24 0.11 14.26 16 3 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 4 C -0.55 -29.40 8.67 25.60 0.22 -29.18 16 5 H 0.07 3.69 7.72 -2.91 -0.02 3.67 16 6 C 0.01 0.66 5.36 84.66 0.45 1.11 16 7 N -0.92 -53.63 11.58 21.45 0.25 -53.38 16 8 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.71 -29.69 5.07 -446.10 -2.26 -31.96 16 13 C 0.49 19.55 7.79 87.66 0.68 20.23 16 14 O -0.61 -29.98 15.65 -3.05 -0.05 -30.03 16 15 C -0.12 -3.18 5.62 29.85 0.17 -3.01 16 16 C -0.10 -2.44 3.87 30.59 0.12 -2.33 16 17 C 0.08 1.62 3.36 45.38 0.15 1.78 16 18 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 19 C -0.15 -2.57 6.51 32.02 0.21 -2.37 16 20 C -0.14 -1.89 6.94 31.82 0.22 -1.67 16 21 C 0.04 0.65 7.58 86.64 0.66 1.31 16 22 N -0.69 -12.85 6.95 -482.45 -3.35 -16.20 16 23 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 3.25 6.45 -2.39 -0.02 3.24 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.41 14.19 8.53 -92.71 -0.79 13.40 16 28 H 0.11 2.56 7.87 -2.39 -0.02 2.55 16 29 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.06 1.74 8.10 -2.38 -0.02 1.72 16 31 H 0.05 1.52 7.98 -2.38 -0.02 1.50 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.16 8.06 -2.39 -0.02 1.14 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.34 6.40 8.27 -89.69 -0.74 5.66 16 Total: -1.00 -67.06 309.71 -0.22 -67.27 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.49 Total: 25.66 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.66 Total: -5.81 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -5.37 Total: -101.54 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.05 Total: -30.03 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -67.06 -0.22 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.215 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds