Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00046 * 2 1 3 5 5 H 1.07999 * 120.00196 * 120.00212 * 4 2 1 6 6 C 1.37879 * 119.99394 * 300.00080 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47776 * 59.99746 * 8 6 4 10 10 H 1.48503 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 299.99350 * 8 6 4 12 12 N 1.46500 * 109.47204 * 239.99873 * 2 1 3 13 13 C 1.34775 * 120.00366 * 85.00218 * 12 2 1 14 14 O 1.21282 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00244 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.46887 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46927 * 180.02562 * 16 15 13 18 18 H 1.09007 * 110.36462 * 305.70263 * 17 16 15 19 19 C 1.54372 * 110.41070 * 183.35077 * 17 16 15 20 20 C 1.54262 * 105.06254 * 217.36519 * 19 17 16 21 21 C 1.54378 * 105.05715 * 0.02562 * 20 19 17 22 22 N 1.48558 * 110.41446 * 68.04864 * 17 16 15 23 23 H 1.08992 * 109.47280 * 299.99853 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99882 * 265.00024 * 12 2 1 28 28 H 1.09001 * 109.46991 * 299.99928 * 15 13 12 29 29 H 1.08999 * 109.47169 * 59.99677 * 15 13 12 30 30 H 1.08994 * 109.46977 * 299.99982 * 16 15 13 31 31 H 1.08999 * 109.46835 * 60.00036 * 16 15 13 32 32 H 1.08996 * 110.32775 * 336.26099 * 19 17 16 33 33 H 1.09006 * 110.32411 * 98.36795 * 19 17 16 34 34 H 1.08996 * 110.31945 * 118.89434 * 20 19 17 35 35 H 1.08999 * 110.32589 * 241.00577 * 20 19 17 36 36 H 1.09000 * 110.41528 * 142.62850 * 21 20 19 37 37 H 1.09002 * 110.41017 * 265.06945 * 21 20 19 38 38 H 1.00895 * 111.00010 * 277.82204 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8303 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0079 10 1 1.8267 -0.4198 5.2204 11 1 1.8278 -2.5197 4.0082 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4118 15 6 2.6500 -0.7287 -3.5874 16 6 2.7008 0.2543 -4.7588 17 6 3.2108 -0.4670 -6.0081 18 1 4.1659 -0.9509 -5.8034 19 6 3.3503 0.5245 -7.1830 20 6 2.9158 -0.2700 -8.4318 21 6 2.5497 -1.6746 -7.9062 22 7 2.2137 -1.4651 -6.4735 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1619 3.4843 27 1 2.2490 -1.6318 -1.1525 28 1 3.6493 -1.1205 -3.3977 29 1 1.9779 -1.5510 -3.8324 30 1 1.7014 0.6456 -4.9483 31 1 3.3728 1.0768 -4.5140 32 1 2.6955 1.3830 -7.0338 33 1 4.3855 0.8514 -7.2816 34 1 2.0477 0.1985 -8.8954 35 1 3.7375 -0.3330 -9.1453 36 1 1.6890 -2.0700 -8.4456 37 1 3.4007 -2.3493 -7.9998 38 1 2.2925 -2.3252 -5.9520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308994742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -80.568129 kcal Electronic energy + Delta-G solvation = -17106.790874 eV Core-core repulsion = 14368.075920 eV Total energy + Delta-G solvation = -2738.714954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63966 -39.39565 -36.73885 -34.35433 -34.07300 -31.14872 -31.06911 -28.94150 -27.34282 -24.97410 -22.80456 -21.75835 -21.04687 -20.96167 -18.86067 -17.76388 -17.32694 -17.10818 -16.51556 -15.97326 -15.90729 -15.19810 -14.67491 -14.42097 -13.96331 -13.77546 -13.60385 -13.37482 -13.03368 -12.89059 -12.83493 -12.72326 -12.40369 -12.27109 -12.18065 -12.15591 -11.77636 -11.71335 -11.35297 -11.11622 -10.67834 -10.53344 -9.71312 -9.46075 -8.17209 -6.35412 1.44936 1.47470 1.55334 1.89443 2.36909 2.70245 3.12811 3.32946 3.72149 3.85326 4.05547 4.14965 4.22309 4.28361 4.48628 4.64130 4.66938 4.74565 4.83382 4.85291 4.92597 5.01184 5.06194 5.09816 5.14260 5.24082 5.27617 5.41065 5.44480 5.62714 5.70316 5.91377 5.93034 6.10530 6.49117 6.73104 7.02020 7.33019 7.62538 8.89087 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057478 B = 0.003982 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.029477 B = 7029.282562 C = 7173.415373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.607 6.607 15 C -0.124 4.124 16 C -0.082 4.082 17 C 0.072 3.928 18 H 0.065 0.935 19 C -0.126 4.126 20 C -0.124 4.124 21 C 0.035 3.965 22 N -0.679 5.679 23 H 0.066 0.934 24 H 0.009 0.991 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -8.266 -18.231 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.357 5.357 13 C 0.280 3.720 14 O -0.489 6.489 15 C -0.163 4.163 16 C -0.121 4.121 17 C -0.038 4.038 18 H 0.083 0.917 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.094 4.094 22 N -0.309 5.309 23 H 0.084 0.916 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.241 0.759 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.294 -6.879 -18.203 20.166 hybrid contribution 0.820 -0.743 1.184 1.620 sum 6.114 -7.622 -17.019 19.624 Atomic orbital electron populations 1.21891 0.98501 0.99398 0.99393 1.18320 0.91040 0.91876 0.82347 0.98718 1.21544 1.32658 1.13619 0.90823 0.90724 1.25855 0.94855 0.95594 1.02480 1.70058 1.37040 1.23991 1.24681 0.85356 0.78662 0.78690 0.77373 1.19467 1.21227 1.18759 1.46317 1.65313 1.14236 1.09838 1.21605 0.77247 0.87162 0.85954 1.90622 1.53373 1.18843 1.86108 1.21659 1.04002 0.99819 0.90866 1.21203 1.01375 0.97005 0.92470 1.22450 0.93833 0.93542 0.93952 0.91685 1.22373 1.01924 0.98066 0.94094 1.22302 1.01636 0.95016 0.97198 1.22949 1.00228 0.96936 0.89251 1.63619 1.49577 1.13931 1.03796 0.91571 0.97182 0.94050 0.92548 0.75949 0.86947 0.87049 0.93143 0.92438 0.92317 0.90200 0.91568 0.89857 0.89933 0.92970 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.31 2.56 44.25 0.11 14.43 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.66 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 N -0.71 -29.89 5.07 -446.09 -2.26 -32.16 16 13 C 0.49 19.96 7.79 87.66 0.68 20.65 16 14 O -0.61 -30.86 15.64 -3.04 -0.05 -30.91 16 15 C -0.12 -3.29 5.60 29.85 0.17 -3.12 16 16 C -0.08 -2.20 4.10 30.60 0.13 -2.08 16 17 C 0.07 1.41 3.13 45.06 0.14 1.55 16 18 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 19 C -0.13 -2.30 6.55 31.49 0.21 -2.09 16 20 C -0.12 -1.83 7.00 31.49 0.22 -1.61 16 21 C 0.04 0.52 7.47 86.43 0.65 1.16 16 22 N -0.68 -12.61 7.02 -478.79 -3.36 -15.97 16 23 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.41 14.09 8.54 -92.71 -0.79 13.30 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 2.49 7.56 -2.39 -0.02 2.47 16 30 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.06 1.25 7.86 -2.39 -0.02 1.23 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.34 5.32 8.50 -89.70 -0.76 4.56 16 Total: -1.00 -69.37 309.04 -0.27 -69.64 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.51 Total: 24.21 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 3.64 Total: -5.58 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -5.38 Total: -101.61 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -69.37 -0.27 -69.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.926 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds