Wall clock time and date at job start Mon Mar 30 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47193 * 2 1 4 4 C 1.46506 * 119.99907 * 94.72949 * 3 2 1 5 5 C 1.50693 * 109.46782 * 269.99599 * 4 3 2 6 6 H 1.07998 * 120.00720 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00140 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00628 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99669 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47068 * 269.99695 * 9 7 5 11 11 H 1.48498 * 109.47207 * 29.99689 * 9 7 5 12 12 H 1.48502 * 109.47141 * 149.99531 * 9 7 5 13 13 C 1.34774 * 120.00297 * 274.72347 * 3 2 1 14 14 O 1.21582 * 120.00362 * 175.27610 * 13 3 2 15 15 N 1.34775 * 119.99926 * 355.27439 * 13 3 2 16 16 C 1.47432 * 125.64884 * 7.03014 * 15 13 3 17 17 C 1.55133 * 104.72248 * 155.81520 * 16 15 13 18 18 C 1.55158 * 101.48486 * 37.29479 * 17 16 15 19 19 H 1.08999 * 110.71958 * 82.69750 * 18 17 16 20 20 C 1.53002 * 110.86524 * 205.89803 * 18 17 16 21 21 C 1.47022 * 125.65057 * 187.33001 * 15 13 3 22 22 H 1.09005 * 109.46747 * 290.09358 * 1 2 3 23 23 H 1.09001 * 109.47037 * 50.09326 * 1 2 3 24 24 H 1.09001 * 109.47239 * 170.09760 * 1 2 3 25 25 H 1.09010 * 109.46788 * 240.00206 * 2 1 3 26 26 H 1.08997 * 109.47016 * 120.00762 * 2 1 3 27 27 H 1.08993 * 109.47070 * 149.99836 * 4 3 2 28 28 H 1.08999 * 109.46656 * 29.99842 * 4 3 2 29 29 H 0.96997 * 120.00456 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.36610 * 274.74529 * 16 15 13 31 31 H 1.08997 * 110.36121 * 37.06404 * 16 15 13 32 32 H 1.09002 * 111.18678 * 279.19094 * 17 16 15 33 33 H 1.08996 * 110.93409 * 155.29241 * 17 16 15 34 34 H 1.09007 * 109.46691 * 173.61345 * 20 18 17 35 35 H 1.09000 * 109.47279 * 293.60980 * 20 18 17 36 36 H 1.08999 * 109.47624 * 53.61428 * 20 18 17 37 37 H 1.08993 * 109.88617 * 300.44642 * 21 15 13 38 38 H 1.09002 * 109.87919 * 61.45949 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3612 2.0369 1.2645 5 6 1.1437 2.7337 1.8150 6 1 0.2081 2.6921 1.2772 7 6 1.2240 3.4238 3.0060 8 7 0.1615 4.0315 3.4868 9 14 2.8421 3.4954 3.9367 10 1 2.9212 2.3516 4.8806 11 1 3.9705 3.4218 2.9742 12 1 2.9209 4.7696 4.6953 13 6 2.1524 2.0486 -1.1632 14 8 2.4750 3.2208 -1.1578 15 7 1.9288 1.4166 -2.3324 16 6 1.3946 0.0506 -2.4823 17 6 0.7561 0.0300 -3.8961 18 6 1.7543 0.9057 -4.6986 19 1 2.6116 0.3154 -5.0221 20 6 1.0646 1.5576 -5.8987 21 6 2.1831 1.9727 -3.6694 22 1 -0.3633 0.3531 0.9652 23 1 -0.3633 0.6593 -0.7883 24 1 -0.3634 -1.0124 -0.1767 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1513 2.7676 1.0922 28 1 2.7066 1.2898 1.9791 29 1 0.2180 4.5173 4.3245 30 1 2.1998 -0.6810 -2.4165 31 1 0.6387 -0.1465 -1.7222 32 1 -0.2372 0.4789 -3.8863 33 1 0.7202 -0.9847 -4.2924 34 1 1.7523 2.2537 -6.3791 35 1 0.7707 0.7872 -6.6116 36 1 0.1795 2.0965 -5.5607 37 1 1.5971 2.8808 -3.8108 38 1 3.2441 2.1950 -3.7827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336033966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:02 Heat of formation + Delta-G solvation = 13.261847 kcal Electronic energy + Delta-G solvation = -18286.234748 eV Core-core repulsion = 15551.588567 eV Total energy + Delta-G solvation = -2734.646181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22736 -37.45378 -35.60640 -33.11914 -32.12140 -30.71384 -29.17561 -27.81469 -25.98879 -23.51065 -22.39767 -21.76498 -20.22904 -19.08596 -16.87001 -16.50338 -16.38372 -15.35927 -14.64021 -14.38258 -14.07577 -13.69470 -13.56354 -13.06738 -12.84626 -12.64492 -12.41857 -12.32266 -11.95848 -11.71678 -11.62352 -11.40153 -10.98773 -10.85616 -10.83149 -10.50423 -10.40298 -10.13259 -9.95369 -9.44210 -9.19342 -8.51598 -8.26675 -7.48821 -6.00871 -3.97946 3.19230 3.31930 3.41240 3.45091 3.93593 4.34319 4.46492 4.54674 4.64387 4.78616 5.19528 5.30864 5.31345 5.35663 5.38469 5.56455 5.59090 5.67668 5.78700 5.84370 5.87039 5.94127 5.99155 6.04841 6.08454 6.26877 6.29936 6.51557 6.78900 6.81132 7.00919 7.45099 7.65264 7.77124 8.57341 8.68634 9.03887 9.37352 9.61040 11.12754 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038082 B = 0.006499 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.086124 B = 4307.163754 C = 4549.414030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 N -0.606 5.606 4 C 0.232 3.768 5 C -0.521 4.521 6 H 0.075 0.925 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.264 1.264 12 H -0.285 1.285 13 C 0.721 3.279 14 O -0.582 6.582 15 N -0.643 5.643 16 C 0.066 3.934 17 C -0.132 4.132 18 C -0.105 4.105 19 H 0.080 0.920 20 C -0.141 4.141 21 C 0.133 3.867 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -12.129 -14.845 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.041 4.041 3 N -0.341 5.341 4 C 0.111 3.889 5 C -0.560 4.560 6 H 0.093 0.907 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.189 1.189 12 H -0.210 1.210 13 C 0.424 3.576 14 O -0.459 6.459 15 N -0.383 5.383 16 C -0.056 4.056 17 C -0.170 4.170 18 C -0.124 4.124 19 H 0.099 0.901 20 C -0.198 4.198 21 C 0.009 3.991 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.322 -11.291 -14.548 18.561 hybrid contribution 0.662 0.091 0.660 0.939 sum 2.983 -11.200 -13.888 18.089 Atomic orbital electron populations 1.22335 0.96576 1.00555 1.03897 1.22292 0.94407 0.84349 1.03086 1.47117 1.67992 1.13082 1.05918 1.19568 0.97330 0.92737 0.79227 1.21393 0.96700 1.31756 1.06131 0.90679 1.24856 0.96219 0.94894 0.97182 1.69896 1.28793 1.34468 1.20791 0.86884 0.85005 0.77787 0.80277 1.20212 1.18879 1.21033 1.15457 0.78704 0.84183 0.79264 1.90890 1.55367 1.14078 1.85526 1.47511 1.70188 1.16017 1.04629 1.23439 0.98794 0.84871 0.98481 1.22985 0.98985 1.00066 0.95013 1.22222 0.98640 0.96655 0.94908 0.90112 1.21742 1.00619 1.00504 0.96965 1.21716 1.00348 0.96353 0.80709 0.90398 0.92311 0.92543 0.89481 0.90958 0.94361 0.95771 0.92714 0.92146 0.86913 0.90591 0.90373 0.92398 0.92396 0.92257 0.91797 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.52 37.16 0.32 -2.45 16 2 C 0.08 1.35 5.69 -4.04 -0.02 1.33 16 3 N -0.61 -13.29 2.46 -180.81 -0.45 -13.74 16 4 C 0.23 5.92 4.23 -5.19 -0.02 5.90 16 5 C -0.52 -15.34 9.94 -34.44 -0.34 -15.69 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 9 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 13 C 0.72 16.33 8.30 -86.92 -0.72 15.61 16 14 O -0.58 -15.91 16.31 5.29 0.09 -15.82 16 15 N -0.64 -11.07 3.33 -180.30 -0.60 -11.67 16 16 C 0.07 0.83 4.78 -2.40 -0.01 0.82 16 17 C -0.13 -1.30 6.55 -24.46 -0.16 -1.46 16 18 C -0.11 -1.06 3.53 -88.78 -0.31 -1.38 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.14 -1.20 9.15 37.16 0.34 -0.86 16 21 C 0.13 1.92 6.47 -3.07 -0.02 1.90 16 22 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.06 0.99 6.99 -51.93 -0.36 0.63 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.17 3.72 -57.36 -0.21 0.96 16 26 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 27 H 0.04 1.06 6.55 -51.93 -0.34 0.72 16 28 H 0.02 0.58 7.29 -51.93 -0.38 0.20 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.06 0.67 7.15 -51.93 -0.37 0.30 16 31 H 0.11 1.45 2.50 -51.93 -0.13 1.32 16 32 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -35.44 296.28 -7.44 -42.88 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.00 Total: -1.64 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.06 Total: 5.71 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.27 Total: -52.96 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.44 -7.44 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336033966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.141 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds