Wall clock time and date at job start Mon Mar 30 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47193 * 2 1 4 4 C 1.46506 * 119.99907 * 94.72949 * 3 2 1 5 5 C 1.50693 * 109.46782 * 269.99599 * 4 3 2 6 6 H 1.07998 * 120.00720 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00140 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00628 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99669 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47068 * 269.99695 * 9 7 5 11 11 H 1.48498 * 109.47207 * 29.99689 * 9 7 5 12 12 H 1.48502 * 109.47141 * 149.99531 * 9 7 5 13 13 C 1.34774 * 120.00297 * 274.72347 * 3 2 1 14 14 O 1.21582 * 120.00362 * 175.27610 * 13 3 2 15 15 N 1.34775 * 119.99926 * 355.27439 * 13 3 2 16 16 C 1.47432 * 125.64884 * 7.03014 * 15 13 3 17 17 C 1.55133 * 104.72248 * 155.81520 * 16 15 13 18 18 C 1.55158 * 101.48486 * 37.29479 * 17 16 15 19 19 H 1.08999 * 110.71958 * 82.69750 * 18 17 16 20 20 C 1.53002 * 110.86524 * 205.89803 * 18 17 16 21 21 C 1.47022 * 125.65057 * 187.33001 * 15 13 3 22 22 H 1.09005 * 109.46747 * 290.09358 * 1 2 3 23 23 H 1.09001 * 109.47037 * 50.09326 * 1 2 3 24 24 H 1.09001 * 109.47239 * 170.09760 * 1 2 3 25 25 H 1.09010 * 109.46788 * 240.00206 * 2 1 3 26 26 H 1.08997 * 109.47016 * 120.00762 * 2 1 3 27 27 H 1.08993 * 109.47070 * 149.99836 * 4 3 2 28 28 H 1.08999 * 109.46656 * 29.99842 * 4 3 2 29 29 H 0.96997 * 120.00456 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.36610 * 274.74529 * 16 15 13 31 31 H 1.08997 * 110.36121 * 37.06404 * 16 15 13 32 32 H 1.09002 * 111.18678 * 279.19094 * 17 16 15 33 33 H 1.08996 * 110.93409 * 155.29241 * 17 16 15 34 34 H 1.09007 * 109.46691 * 173.61345 * 20 18 17 35 35 H 1.09000 * 109.47279 * 293.60980 * 20 18 17 36 36 H 1.08999 * 109.47624 * 53.61428 * 20 18 17 37 37 H 1.08993 * 109.88617 * 300.44642 * 21 15 13 38 38 H 1.09002 * 109.87919 * 61.45949 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3612 2.0369 1.2645 5 6 1.1437 2.7337 1.8150 6 1 0.2081 2.6921 1.2772 7 6 1.2240 3.4238 3.0060 8 7 0.1615 4.0315 3.4868 9 14 2.8421 3.4954 3.9367 10 1 2.9212 2.3516 4.8806 11 1 3.9705 3.4218 2.9742 12 1 2.9209 4.7696 4.6953 13 6 2.1524 2.0486 -1.1632 14 8 2.4750 3.2208 -1.1578 15 7 1.9288 1.4166 -2.3324 16 6 1.3946 0.0506 -2.4823 17 6 0.7561 0.0300 -3.8961 18 6 1.7543 0.9057 -4.6986 19 1 2.6116 0.3154 -5.0221 20 6 1.0646 1.5576 -5.8987 21 6 2.1831 1.9727 -3.6694 22 1 -0.3633 0.3531 0.9652 23 1 -0.3633 0.6593 -0.7883 24 1 -0.3634 -1.0124 -0.1767 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1513 2.7676 1.0922 28 1 2.7066 1.2898 1.9791 29 1 0.2180 4.5173 4.3245 30 1 2.1998 -0.6810 -2.4165 31 1 0.6387 -0.1465 -1.7222 32 1 -0.2372 0.4789 -3.8863 33 1 0.7202 -0.9847 -4.2924 34 1 1.7523 2.2537 -6.3791 35 1 0.7707 0.7872 -6.6116 36 1 0.1795 2.0965 -5.5607 37 1 1.5971 2.8808 -3.8108 38 1 3.2441 2.1950 -3.7827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336033966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:02 Heat of formation + Delta-G solvation = -11.477278 kcal Electronic energy + Delta-G solvation = -18287.307517 eV Core-core repulsion = 15551.588567 eV Total energy + Delta-G solvation = -2735.718950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67223 -38.78336 -37.29362 -34.99914 -33.65289 -32.28767 -30.35827 -29.55031 -27.22929 -24.78798 -24.24683 -23.09648 -21.19478 -20.60789 -19.08682 -18.01939 -17.68448 -16.98678 -16.46535 -15.67611 -15.38441 -15.35480 -14.80175 -14.52011 -14.31080 -13.96317 -13.77867 -13.54086 -13.46831 -13.12336 -13.01484 -12.81021 -12.51231 -12.31525 -12.09387 -12.00410 -11.71144 -11.68778 -11.43543 -11.26984 -10.87733 -10.79012 -9.86389 -9.10019 -8.31493 -6.35287 1.31296 1.36231 1.47647 1.72691 2.23037 2.32821 2.96583 3.03761 3.61159 3.65529 3.96633 4.04713 4.30810 4.35153 4.39855 4.51037 4.61487 4.63905 4.73603 4.78760 4.82142 4.90663 4.92925 4.96868 4.97995 5.12731 5.16692 5.28672 5.39750 5.47001 5.49285 5.52966 5.70296 6.10678 6.30846 6.65221 7.09212 7.25489 7.68235 8.85795 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038082 B = 0.006499 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.086124 B = 4307.163754 C = 4549.414030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 N -0.614 5.614 4 C 0.241 3.759 5 C -0.528 4.528 6 H 0.026 0.974 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.949 3.051 10 H -0.248 1.248 11 H -0.258 1.258 12 H -0.282 1.282 13 C 0.708 3.292 14 O -0.646 6.646 15 N -0.640 5.640 16 C 0.054 3.946 17 C -0.122 4.122 18 C -0.091 4.091 19 H 0.105 0.895 20 C -0.139 4.139 21 C 0.122 3.878 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.085 0.915 27 H 0.014 0.986 28 H 0.052 0.948 29 H 0.267 0.733 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -15.395 -16.094 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.048 4.048 3 N -0.348 5.348 4 C 0.119 3.881 5 C -0.566 4.566 6 H 0.045 0.955 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.172 1.172 11 H -0.182 1.182 12 H -0.208 1.208 13 C 0.411 3.589 14 O -0.528 6.528 15 N -0.379 5.379 16 C -0.067 4.067 17 C -0.160 4.160 18 C -0.110 4.110 19 H 0.123 0.877 20 C -0.196 4.196 21 C -0.001 4.001 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.125 0.875 25 H 0.145 0.855 26 H 0.104 0.896 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.526 -14.646 -15.848 21.865 hybrid contribution 0.171 1.102 0.943 1.461 sum 3.697 -13.544 -14.905 20.476 Atomic orbital electron populations 1.22253 0.96299 1.02905 1.00904 1.22752 0.94596 0.81637 1.05767 1.47126 1.68103 1.14959 1.04608 1.19250 0.94636 0.92932 0.81328 1.21571 0.96429 1.32573 1.06062 0.95533 1.25866 1.00557 0.94204 0.98305 1.70056 1.31549 1.35647 1.21642 0.85697 0.79457 0.78756 0.78939 1.17223 1.18222 1.20801 1.15804 0.78556 0.83748 0.80789 1.90823 1.58173 1.17031 1.86792 1.47537 1.68798 1.17855 1.03700 1.23765 0.99764 0.82604 1.00533 1.22998 0.98029 1.02137 0.92826 1.22228 0.99673 0.95251 0.93835 0.87721 1.21740 0.99982 1.01151 0.96747 1.22000 0.99827 0.97463 0.80843 0.94589 0.93996 0.87511 0.85455 0.89642 0.96777 0.93028 0.92386 0.89149 0.87145 0.91352 0.86333 0.92235 0.89871 0.93554 0.94196 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 8.52 71.98 0.61 -4.46 16 2 C 0.07 2.28 5.69 86.38 0.49 2.77 16 3 N -0.61 -27.16 2.46 -844.22 -2.08 -29.24 16 4 C 0.24 12.49 4.23 85.63 0.36 12.85 16 5 C -0.53 -32.43 9.94 25.60 0.25 -32.18 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.49 5.47 84.66 0.46 0.95 16 8 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 9 Si 0.95 45.93 27.47 68.60 1.88 47.81 16 10 H -0.25 -10.86 7.11 99.48 0.71 -10.16 16 11 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 C 0.71 32.97 8.30 179.06 1.49 34.46 16 14 O -0.65 -37.32 16.31 -3.97 -0.06 -37.38 16 15 N -0.64 -21.73 3.33 -842.60 -2.80 -24.53 16 16 C 0.05 1.17 4.78 86.93 0.42 1.59 16 17 C -0.12 -1.91 6.55 32.07 0.21 -1.70 16 18 C -0.09 -1.55 3.53 -9.60 -0.03 -1.58 16 19 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 20 C -0.14 -2.01 9.15 71.98 0.66 -1.35 16 21 C 0.12 3.50 6.47 86.73 0.56 4.06 16 22 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.04 1.41 6.99 -2.39 -0.02 1.39 16 24 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.13 2.94 3.72 -7.49 -0.03 2.91 16 26 H 0.09 2.44 7.84 -2.39 -0.02 2.42 16 27 H 0.01 0.80 6.55 -2.39 -0.02 0.78 16 28 H 0.05 2.38 7.29 -2.39 -0.02 2.36 16 29 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.09 1.52 7.15 -2.39 -0.02 1.50 16 31 H 0.11 2.50 2.50 -2.39 -0.01 2.49 16 32 H 0.07 1.21 8.03 -2.39 -0.02 1.19 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 37 H 0.04 1.31 7.82 -2.39 -0.02 1.29 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -84.22 296.28 3.68 -80.55 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.96 Total: 8.89 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.48 Total: 15.41 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.58 Total: -115.28 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.06 Total: -37.38 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -84.22 3.68 -80.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336033966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.069 kcal (2) G-P(sol) polarization free energy of solvation -84.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds