Wall clock time and date at job start Mon Mar 30 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47031 * 2 1 4 4 C 1.34772 * 120.00142 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00041 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46679 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.58823 * 304.99772 * 7 6 4 9 9 C 1.53202 * 109.58473 * 184.71759 * 7 6 4 10 10 C 1.53034 * 109.31347 * 185.43470 * 9 7 6 11 11 C 1.53049 * 109.53986 * 61.36517 * 10 9 7 12 12 C 1.53187 * 109.30932 * 298.63485 * 11 10 9 13 13 N 1.46921 * 109.59216 * 65.28689 * 7 6 4 14 14 C 1.36939 * 120.62691 * 353.53546 * 13 7 6 15 15 H 1.08004 * 120.00036 * 41.03395 * 14 13 7 16 16 C 1.38816 * 120.00138 * 221.03474 * 14 13 7 17 17 N 1.31617 * 119.99913 * 214.16065 * 16 14 13 18 18 Si 1.86791 * 119.99905 * 34.15325 * 16 14 13 19 19 H 1.48500 * 109.47121 * 84.73901 * 18 16 14 20 20 H 1.48504 * 109.47237 * 204.73751 * 18 16 14 21 21 H 1.48499 * 109.47416 * 324.73584 * 18 16 14 22 22 H 1.09000 * 109.47509 * 300.00242 * 1 2 3 23 23 H 1.09008 * 109.46723 * 60.00669 * 1 2 3 24 24 H 1.08996 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47509 * 239.99758 * 2 1 3 26 26 H 1.08998 * 109.46851 * 119.99211 * 2 1 3 27 27 H 0.96999 * 119.99877 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47311 * 60.00556 * 6 4 3 29 29 H 1.08998 * 109.46918 * 299.99841 * 6 4 3 30 30 H 1.08998 * 109.49477 * 305.39007 * 9 7 6 31 31 H 1.08995 * 109.49756 * 65.48049 * 9 7 6 32 32 H 1.09002 * 109.45979 * 181.38339 * 10 9 7 33 33 H 1.08994 * 109.46345 * 301.35670 * 10 9 7 34 34 H 1.09000 * 109.49470 * 58.58476 * 11 10 9 35 35 H 1.08997 * 109.49597 * 178.68132 * 11 10 9 36 36 H 1.09004 * 109.58416 * 174.42054 * 12 11 10 37 37 H 1.09003 * 109.59188 * 294.70260 * 12 11 10 38 38 H 0.96998 * 120.00011 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8456 3.0484 -0.0001 7 6 5.3756 3.0483 0.0001 8 1 5.7410 2.4597 0.8416 9 6 5.8892 4.4869 0.1182 10 6 7.4134 4.4929 -0.0184 11 6 7.8062 3.9514 -1.3950 12 6 7.3144 2.5069 -1.5302 13 7 5.8684 2.4691 -1.2570 14 6 4.9993 1.9093 -2.1551 15 1 4.0514 2.3855 -2.3580 16 6 5.3366 0.7298 -2.8046 17 7 4.9434 0.5253 -4.0440 18 14 6.3485 -0.5672 -1.9198 19 1 5.4499 -1.4298 -1.1114 20 1 7.0678 -1.3995 -2.9174 21 1 7.3325 0.0964 -1.0273 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.3880 2.1185 -0.0004 28 1 3.4819 3.5627 0.8894 29 1 3.4827 3.5617 -0.8905 30 1 5.4506 5.0958 -0.6723 31 1 5.6094 4.8945 1.0895 32 1 7.7837 5.5124 0.0898 33 1 7.8501 3.8638 0.7571 34 1 7.3495 4.5653 -2.1712 35 1 8.8907 3.9779 -1.5004 36 1 7.5035 2.1498 -2.5425 37 1 7.8396 1.8735 -0.8152 38 1 5.1787 -0.2990 -4.4977 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342042566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:50 Heat of formation + Delta-G solvation = -44.838896 kcal Electronic energy + Delta-G solvation = -18679.975854 eV Core-core repulsion = 15942.810235 eV Total energy + Delta-G solvation = -2737.165619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73731 -38.94594 -36.02032 -34.81050 -33.65260 -32.42601 -31.37350 -28.44539 -26.79887 -23.95940 -23.90910 -22.48054 -21.07125 -20.80311 -18.39429 -17.61429 -17.19834 -16.72488 -16.67552 -15.91359 -15.33596 -14.96745 -14.87142 -14.62879 -14.56763 -14.21878 -13.49826 -13.40733 -13.21128 -13.02566 -12.66755 -12.64403 -12.49040 -12.31885 -12.14474 -11.98576 -11.56639 -11.48961 -11.18032 -11.11877 -10.51502 -10.28164 -9.82199 -8.47598 -8.18435 -5.37686 1.31374 1.44708 1.58620 2.13706 2.55064 2.57930 3.12827 3.48755 4.06389 4.07907 4.18019 4.21369 4.23478 4.32388 4.46984 4.54034 4.65225 4.69844 4.77854 4.81817 4.97485 5.06986 5.07915 5.12434 5.15748 5.24524 5.27767 5.34382 5.39047 5.44936 5.71806 5.77056 6.02448 6.23805 6.89172 7.14781 7.73763 7.77707 8.28955 9.01632 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.011307 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.617749 B = 2475.828784 C = 3373.732193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 N -0.732 5.732 4 C 0.511 3.489 5 O -0.558 6.558 6 C -0.120 4.120 7 C 0.171 3.829 8 H 0.016 0.984 9 C -0.120 4.120 10 C -0.107 4.107 11 C -0.127 4.127 12 C 0.140 3.860 13 N -0.602 5.602 14 C -0.208 4.208 15 H 0.049 0.951 16 C 0.005 3.995 17 N -0.937 5.937 18 Si 0.909 3.091 19 H -0.311 1.311 20 H -0.323 1.323 21 H -0.259 1.259 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.411 0.589 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.010 0.990 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 8.699 11.310 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.008 4.008 3 N -0.387 5.387 4 C 0.299 3.701 5 O -0.434 6.434 6 C -0.160 4.160 7 C 0.066 3.934 8 H 0.034 0.966 9 C -0.159 4.159 10 C -0.145 4.145 11 C -0.166 4.166 12 C 0.015 3.985 13 N -0.327 5.327 14 C -0.338 4.338 15 H 0.067 0.933 16 C -0.191 4.191 17 N -0.582 5.582 18 Si 0.742 3.258 19 H -0.240 1.240 20 H -0.252 1.252 21 H -0.185 1.185 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.247 0.753 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.775 7.938 11.198 14.533 hybrid contribution 0.253 -1.410 -0.205 1.447 sum -4.521 6.528 10.993 13.561 Atomic orbital electron populations 1.21893 0.91222 1.03888 1.03384 1.21145 0.96499 0.83591 0.99614 1.45910 1.06936 1.08695 1.77174 1.21010 0.82111 0.92541 0.74479 1.90613 1.56281 1.47871 1.48670 1.21705 0.96644 0.92793 1.04817 1.20600 0.91726 0.93461 0.87611 0.96607 1.21933 0.96051 0.95604 1.02287 1.21394 0.95996 1.01152 0.95914 1.21918 1.00131 0.96059 0.98451 1.21263 0.84293 0.95717 0.97231 1.44523 1.02372 1.67715 1.18099 1.18197 1.01201 1.00986 1.13445 0.93317 1.25828 0.98781 0.98657 0.95866 1.70128 1.51373 1.26187 1.10482 0.86344 0.78768 0.82200 0.78535 1.24044 1.25198 1.18455 0.89970 0.91716 0.90191 0.96004 0.93153 0.75281 0.85648 0.88949 0.91943 0.89331 0.89956 0.92901 0.92557 0.91025 0.94857 0.97187 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 10.03 71.98 0.72 -2.28 16 2 C 0.12 3.70 6.39 86.38 0.55 4.25 16 3 N -0.73 -23.35 5.56 -463.05 -2.57 -25.92 16 4 C 0.51 20.65 6.29 87.66 0.55 21.20 16 5 O -0.56 -28.97 12.01 -3.05 -0.04 -29.01 16 6 C -0.12 -3.98 4.73 29.85 0.14 -3.84 16 7 C 0.17 6.58 2.46 44.98 0.11 6.69 16 8 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 9 C -0.12 -3.45 5.37 30.67 0.16 -3.29 16 10 C -0.11 -3.03 5.88 30.62 0.18 -2.85 16 11 C -0.13 -4.34 6.08 30.67 0.19 -4.16 16 12 C 0.14 6.41 4.58 86.31 0.40 6.80 16 13 N -0.60 -29.08 2.29 -674.50 -1.55 -30.63 16 14 C -0.21 -11.81 6.31 84.03 0.53 -11.27 16 15 H 0.05 2.92 6.45 -2.91 -0.02 2.90 16 16 C 0.01 0.34 4.78 84.86 0.41 0.74 16 17 N -0.94 -61.05 13.97 21.65 0.30 -60.75 16 18 Si 0.91 53.24 25.36 68.60 1.74 54.98 16 19 H -0.31 -19.42 7.11 99.48 0.71 -18.71 16 20 H -0.32 -18.91 7.11 99.48 0.71 -18.20 16 21 H -0.26 -14.60 5.18 99.48 0.52 -14.09 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.41 9.54 8.47 -92.71 -0.79 8.75 16 28 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 3.14 7.09 -2.39 -0.02 3.13 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.69 7.01 -2.38 -0.02 1.67 16 37 H 0.01 0.49 6.68 -2.39 -0.02 0.47 16 38 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -78.87 291.17 1.88 -76.99 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 0.05 Total: 2.34 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 3.94 Total: 12.00 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -3.82 Total: -117.30 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 1.74 Total: 54.98 kcal Total: -78.87 1.88 -76.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342042566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.152 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds