Wall clock time and date at job start Mon Mar 30 2020 04:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47306 * 2 1 4 4 C 1.34774 * 120.00021 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99877 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47133 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.58400 * 55.28776 * 7 6 4 9 9 C 1.53194 * 109.70183 * 175.64407 * 7 6 4 10 10 C 1.53043 * 109.31000 * 174.49618 * 9 7 6 11 11 C 1.53038 * 109.53784 * 298.63159 * 10 9 7 12 12 C 1.52765 * 109.38424 * 61.24001 * 11 10 9 13 13 N 1.46924 * 109.58903 * 295.00348 * 7 6 4 14 14 C 1.36940 * 120.62954 * 6.43470 * 13 7 6 15 15 H 1.08001 * 120.00216 * 327.68399 * 14 13 7 16 16 C 1.38813 * 119.99832 * 147.67913 * 14 13 7 17 17 N 1.31622 * 119.99873 * 340.60747 * 16 14 13 18 18 Si 1.86795 * 120.00051 * 160.61346 * 16 14 13 19 19 H 1.48499 * 109.47400 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47008 * 299.99800 * 18 16 14 21 21 H 1.48501 * 109.47426 * 59.99546 * 18 16 14 22 22 H 1.08995 * 109.47372 * 299.99958 * 1 2 3 23 23 H 1.09000 * 109.47094 * 60.00389 * 1 2 3 24 24 H 1.09000 * 109.47451 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47345 * 239.99716 * 2 1 3 26 26 H 1.09001 * 109.47184 * 120.00151 * 2 1 3 27 27 H 0.96998 * 119.99206 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.46991 * 59.99975 * 6 4 3 29 29 H 1.09001 * 109.47426 * 300.00478 * 6 4 3 30 30 H 1.09005 * 109.49477 * 294.44333 * 9 7 6 31 31 H 1.08993 * 109.50329 * 54.51027 * 9 7 6 32 32 H 1.09000 * 109.46416 * 58.65193 * 10 9 7 33 33 H 1.08997 * 109.45880 * 178.62793 * 10 9 7 34 34 H 1.08999 * 109.49855 * 181.31880 * 11 10 9 35 35 H 1.09002 * 109.49456 * 301.41850 * 11 10 9 36 36 H 1.08997 * 109.50761 * 185.70928 * 12 11 10 37 37 H 1.08995 * 109.43030 * 65.42464 * 12 11 10 38 38 H 0.97001 * 120.00368 * 354.08663 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 -0.0001 7 6 5.3757 3.0482 0.0014 8 1 5.7419 2.4628 -0.8421 9 6 5.8923 4.4863 -0.1088 10 6 7.4163 4.4887 0.0314 11 6 7.8047 3.9399 1.4062 12 6 7.3091 2.5007 1.5362 13 7 5.8671 2.4641 1.2567 14 6 4.9971 1.9013 2.1520 15 1 3.9964 2.2948 2.2528 16 6 5.4013 0.8251 2.9299 17 7 6.4417 0.1049 2.5672 18 14 4.4688 0.3986 4.4912 19 1 5.0956 -0.7837 5.1350 20 1 4.5128 1.5526 5.4249 21 1 3.0562 0.0877 4.1549 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.3879 2.1184 -0.0004 28 1 3.4819 3.5626 0.8895 29 1 3.4828 3.5616 -0.8905 30 1 5.6155 4.8989 -1.0790 31 1 5.4527 5.0925 0.6832 32 1 7.8535 3.8625 -0.7463 33 1 7.7887 5.5079 -0.0709 34 1 8.8890 3.9638 1.5144 35 1 7.3474 4.5511 2.1843 36 1 7.4944 2.1420 2.5486 37 1 7.8361 1.8698 0.8205 38 1 6.8734 0.2714 1.7147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342042569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:53 Heat of formation + Delta-G solvation = -26.416261 kcal Electronic energy + Delta-G solvation = -18643.093148 eV Core-core repulsion = 15906.726394 eV Total energy + Delta-G solvation = -2736.366753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.10906 -37.33311 -34.56332 -33.08059 -32.08695 -30.12090 -29.44140 -26.86910 -24.84425 -22.66770 -21.81694 -21.03571 -19.53748 -18.93336 -16.85491 -16.08256 -15.49802 -15.29210 -14.59378 -14.07956 -13.56014 -13.45243 -13.22230 -13.07360 -12.88615 -12.33057 -12.17189 -11.70660 -11.55623 -11.41930 -11.26666 -10.93427 -10.77735 -10.58628 -10.18632 -10.11234 -9.95316 -9.79926 -9.57358 -8.94231 -8.72846 -8.37518 -8.07888 -6.55016 -5.73514 -2.97539 3.56392 3.59363 3.73014 3.77610 3.90430 4.75124 5.22896 5.28285 5.31750 5.44441 5.53821 5.57819 5.65030 5.73688 5.82109 5.96646 5.97896 6.09363 6.19435 6.22767 6.27380 6.33272 6.38107 6.53905 6.59220 6.68915 6.76685 6.86265 7.07382 7.14081 7.27471 7.40473 8.15042 8.25987 8.87059 9.28017 9.40952 10.12223 10.57669 11.53480 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.011375 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.573630 B = 2460.994623 C = 3594.873567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 N -0.751 5.751 4 C 0.516 3.484 5 O -0.484 6.484 6 C -0.124 4.124 7 C 0.186 3.814 8 H 0.028 0.972 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.138 4.138 12 C 0.156 3.844 13 N -0.584 5.584 14 C -0.323 4.323 15 H 0.045 0.955 16 C -0.018 4.018 17 N -0.920 5.920 18 Si 1.058 2.942 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.298 1.298 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.389 0.611 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.013 0.987 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 6.699 -5.779 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 N -0.407 5.407 4 C 0.302 3.698 5 O -0.354 6.354 6 C -0.164 4.164 7 C 0.079 3.921 8 H 0.045 0.955 9 C -0.169 4.169 10 C -0.145 4.145 11 C -0.177 4.177 12 C 0.030 3.970 13 N -0.308 5.308 14 C -0.453 4.453 15 H 0.063 0.937 16 C -0.220 4.220 17 N -0.561 5.561 18 Si 0.889 3.111 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.225 1.225 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.221 0.779 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.376 4.942 -4.435 9.924 hybrid contribution -0.491 1.373 -1.304 1.956 sum -7.867 6.314 -5.738 11.606 Atomic orbital electron populations 1.21976 0.95419 1.02511 1.01928 1.21094 0.93102 0.84329 1.02006 1.46074 1.07570 1.07551 1.79550 1.20373 0.81318 0.91989 0.76133 1.90780 1.54336 1.45816 1.44475 1.21669 0.98448 0.94205 1.02100 1.20184 0.89800 0.91377 0.90725 0.95482 1.22041 0.96084 0.99012 0.99792 1.21357 0.96020 0.99124 0.98027 1.22016 0.98757 1.00525 0.96403 1.20783 0.84564 0.91422 1.00202 1.43954 1.02378 1.68175 1.16283 1.19560 0.96956 1.11530 1.17244 0.93698 1.25567 1.00333 0.91944 1.04178 1.70668 1.23570 1.37821 1.24000 0.83634 0.74989 0.75876 0.76555 1.21259 1.22415 1.22522 0.92242 0.92514 0.91425 0.92474 0.91775 0.77882 0.89264 0.91062 0.93377 0.92372 0.92951 0.93716 0.93461 0.92619 0.90682 0.96930 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.03 37.15 0.37 -1.41 16 2 C 0.12 1.88 6.39 -4.04 -0.03 1.85 16 3 N -0.75 -12.51 5.56 -60.29 -0.33 -12.84 16 4 C 0.52 10.90 6.12 -10.99 -0.07 10.83 16 5 O -0.48 -12.89 14.11 5.55 0.08 -12.81 16 6 C -0.12 -2.32 4.73 -27.88 -0.13 -2.45 16 7 C 0.19 4.00 2.47 -67.60 -0.17 3.84 16 8 H 0.03 0.65 7.97 -51.93 -0.41 0.24 16 9 C -0.13 -2.31 5.38 -26.61 -0.14 -2.45 16 10 C -0.11 -1.89 5.89 -26.69 -0.16 -2.04 16 11 C -0.14 -2.72 6.06 -26.83 -0.16 -2.88 16 12 C 0.16 3.84 4.61 -3.93 -0.02 3.82 16 13 N -0.58 -14.87 2.63 -165.04 -0.43 -15.30 16 14 C -0.32 -9.00 6.16 -15.06 -0.09 -9.09 16 15 H 0.05 1.25 5.78 -52.49 -0.30 0.95 16 16 C -0.02 -0.52 4.81 -17.43 -0.08 -0.60 16 17 N -0.92 -29.09 12.51 55.49 0.69 -28.40 16 18 Si 1.06 26.64 29.96 -169.99 -5.09 21.55 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.39 5.04 8.47 -40.82 -0.35 4.70 16 28 H 0.09 1.68 7.10 -51.93 -0.37 1.31 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 2.05 6.49 -51.93 -0.34 1.72 16 37 H 0.01 0.33 7.76 -51.93 -0.40 -0.07 16 38 H 0.27 8.80 6.42 -40.82 -0.26 8.53 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -34.21 296.44 -7.60 -41.81 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.30 Total: 2.12 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.68 Total: -0.59 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.07 Total: -56.54 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -5.09 Total: 21.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.21 -7.60 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342042569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds