Wall clock time and date at job start Mon Mar 30 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21275 * 120.00305 * 2 1 4 4 N 1.34780 * 119.99989 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.64626 * 0.03595 * 4 2 1 6 6 C 1.54912 * 104.83331 * 155.84077 * 5 4 2 7 7 C 1.55398 * 101.66536 * 36.92509 * 6 5 4 8 8 C 1.47026 * 125.65077 * 180.02562 * 4 2 1 9 9 H 1.09000 * 109.87762 * 300.66466 * 8 4 2 10 10 C 1.52996 * 109.88117 * 61.67214 * 8 4 2 11 11 N 1.46900 * 109.47450 * 303.28513 * 10 8 4 12 12 C 1.46901 * 110.99890 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47401 * 34.99821 * 12 11 10 14 14 C 1.53002 * 109.46860 * 274.99873 * 12 11 10 15 15 C 1.50701 * 109.46921 * 154.99793 * 12 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09002 * 109.47331 * 240.00143 * 1 2 3 24 24 H 1.08997 * 109.46955 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47119 * 119.99726 * 1 2 3 26 26 H 1.08999 * 110.37110 * 274.67949 * 5 4 2 27 27 H 1.09005 * 110.36953 * 36.89393 * 5 4 2 28 28 H 1.08996 * 111.00603 * 155.08613 * 6 5 4 29 29 H 1.08997 * 111.00239 * 278.89842 * 6 5 4 30 30 H 1.08996 * 110.85286 * 206.30407 * 7 6 5 31 31 H 1.08992 * 110.69655 * 82.95131 * 7 6 5 32 32 H 1.09002 * 109.46846 * 183.28152 * 10 8 4 33 33 H 1.09005 * 109.47132 * 63.28896 * 10 8 4 34 34 H 1.00901 * 110.99385 * 303.95419 * 11 10 8 35 35 H 1.09002 * 109.47075 * 299.99593 * 14 12 11 36 36 H 1.08996 * 109.47407 * 60.00550 * 14 12 11 37 37 H 1.09000 * 109.46986 * 180.02562 * 14 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5729 -2.5103 -0.0019 6 6 2.6545 -3.4345 -0.6149 7 6 3.9582 -2.8226 -0.0313 8 6 3.6440 -1.3120 -0.0001 9 1 4.0646 -0.8276 -0.8813 10 6 4.2285 -0.6847 1.2671 11 7 3.8168 0.7229 1.3514 12 6 4.3614 1.3593 2.5582 13 1 5.3499 0.9514 2.7695 14 6 3.4327 1.0849 3.7428 15 6 4.4683 2.8462 2.3374 16 1 4.1618 3.2756 1.3950 17 6 4.9563 3.6586 3.3389 18 7 5.3290 3.1357 4.4867 19 14 5.0880 5.5017 3.0654 20 1 4.6072 5.8353 1.7006 21 1 4.2563 6.2118 4.0701 22 1 6.5047 5.9233 3.2085 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.3400 -2.8223 1.0162 27 1 0.6723 -2.5184 -0.6158 28 1 2.5226 -4.4642 -0.2825 29 1 2.6491 -3.3738 -1.7031 30 1 4.8080 -3.0265 -0.6827 31 1 4.1434 -3.1985 0.9749 32 1 5.3164 -0.7437 1.2331 33 1 3.8625 -1.2233 2.1413 34 1 4.0884 1.2293 0.5220 35 1 2.4442 1.4929 3.5315 36 1 3.3555 0.0095 3.9025 37 1 3.8365 1.5575 4.6381 38 1 5.6726 3.7072 5.1911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379460208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:50 Heat of formation + Delta-G solvation = -18.526855 kcal Electronic energy + Delta-G solvation = -18249.830444 eV Core-core repulsion = 15513.805801 eV Total energy + Delta-G solvation = -2736.024643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.70025 -36.90201 -35.43262 -32.56037 -31.56528 -30.14239 -28.73241 -27.39525 -25.10944 -23.93654 -22.05199 -20.99643 -19.50876 -18.46343 -16.75932 -16.45758 -15.87806 -14.77076 -14.56717 -14.18512 -13.81813 -13.55396 -13.25788 -13.01797 -12.70695 -12.30785 -12.12325 -12.04206 -11.57389 -11.42840 -11.25689 -11.10217 -11.01592 -10.79244 -10.59973 -10.50975 -10.08750 -9.97230 -9.70879 -8.94573 -8.58348 -8.33610 -8.09915 -6.72172 -5.87121 -3.90665 3.33743 3.38193 3.45177 3.50898 3.52442 4.52882 4.58105 4.62385 4.89004 5.18383 5.31093 5.35387 5.44181 5.51575 5.53791 5.66014 5.68744 5.80895 5.81906 5.96177 6.05899 6.09671 6.14798 6.31362 6.59677 6.82721 7.04102 7.29552 7.43529 7.69486 7.98396 8.10600 8.11542 8.47306 8.70193 8.92328 9.05229 9.26005 9.74361 11.19662 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.006549 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.911847 B = 4274.618100 C = 4647.072324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.516 3.484 3 O -0.476 6.476 4 N -0.615 5.615 5 C 0.103 3.897 6 C -0.132 4.132 7 C -0.127 4.127 8 C 0.141 3.859 9 H 0.065 0.935 10 C 0.050 3.950 11 N -0.658 5.658 12 C 0.208 3.792 13 H -0.008 1.008 14 C -0.118 4.118 15 C -0.503 4.503 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.059 0.941 34 H 0.340 0.660 35 H 0.028 0.972 36 H -0.002 1.002 37 H 0.077 0.923 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 -14.185 -9.536 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.303 3.697 3 O -0.346 6.346 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.170 4.170 7 C -0.166 4.166 8 C 0.037 3.963 9 H 0.083 0.917 10 C -0.081 4.081 11 N -0.293 5.293 12 C 0.100 3.900 13 H 0.010 0.990 14 C -0.176 4.176 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.047 0.953 36 H 0.017 0.983 37 H 0.095 0.905 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.550 -13.536 -9.079 17.963 hybrid contribution 0.994 0.900 -0.091 1.343 sum -6.557 -12.637 -9.170 16.934 Atomic orbital electron populations 1.21855 0.93086 1.04686 1.02813 1.20107 0.89372 0.82662 0.77545 1.90782 1.69147 1.29904 1.44768 1.48366 1.06021 1.05047 1.75937 1.22185 0.96347 0.83251 1.00315 1.22784 0.94904 0.98762 1.00583 1.22706 0.97684 0.94220 1.01972 1.21584 0.81440 0.94673 0.98631 0.91697 1.22358 0.95861 0.94051 0.95860 1.61100 1.62536 0.99095 1.06545 1.19105 0.91057 0.93200 0.86627 0.99022 1.21652 0.99115 0.95313 1.01553 1.21370 1.40694 0.91907 1.00167 0.92106 1.24933 0.95616 0.98617 0.95200 1.69924 1.44252 1.34801 1.04620 0.86496 0.77326 0.85684 0.78230 1.19760 1.21140 1.21287 0.90369 0.89457 0.90742 0.92007 0.91228 0.90306 0.90931 0.90438 0.90491 0.96333 0.92272 0.83985 0.95312 0.98340 0.90476 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.33 36.00 0.34 -1.72 16 2 C 0.52 8.85 7.53 -10.99 -0.08 8.77 16 3 O -0.48 -10.54 13.25 5.56 0.07 -10.47 16 4 N -0.62 -9.08 3.06 -163.02 -0.50 -9.58 16 5 C 0.10 1.06 6.70 -2.53 -0.02 1.04 16 6 C -0.13 -1.14 7.09 -24.45 -0.17 -1.32 16 7 C -0.13 -1.38 6.50 -24.76 -0.16 -1.54 16 8 C 0.14 2.14 3.28 -66.95 -0.22 1.92 16 9 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 10 C 0.05 0.96 5.06 -3.83 -0.02 0.95 16 11 N -0.66 -15.66 3.11 -107.95 -0.34 -16.00 16 12 C 0.21 5.75 2.60 -68.86 -0.18 5.57 16 13 H -0.01 -0.23 7.80 -51.93 -0.40 -0.64 16 14 C -0.12 -3.20 9.19 37.16 0.34 -2.86 16 15 C -0.50 -15.03 8.59 -34.44 -0.30 -15.32 16 16 H 0.06 1.85 7.62 -52.49 -0.40 1.45 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.90 -27.16 11.32 55.43 0.63 -26.53 16 19 Si 0.89 22.73 29.54 -169.99 -5.02 17.71 16 20 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 25 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.58 7.47 -51.93 -0.39 0.19 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 32 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 33 H 0.06 1.18 7.36 -51.93 -0.38 0.80 16 34 H 0.34 8.49 6.91 -39.29 -0.27 8.21 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.00 -0.06 7.45 -51.93 -0.39 -0.45 16 37 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -33.64 300.57 -7.49 -41.12 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.29 Total: 2.13 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.56 Total: -2.93 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.21 Total: -52.10 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.64 -7.49 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379460208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.598 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds