Wall clock time and date at job start Mon Mar 30 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21275 * 120.00305 * 2 1 4 4 N 1.34780 * 119.99989 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.64626 * 0.03595 * 4 2 1 6 6 C 1.54912 * 104.83331 * 155.84077 * 5 4 2 7 7 C 1.55398 * 101.66536 * 36.92509 * 6 5 4 8 8 C 1.47026 * 125.65077 * 180.02562 * 4 2 1 9 9 H 1.09000 * 109.87762 * 300.66466 * 8 4 2 10 10 C 1.52996 * 109.88117 * 61.67214 * 8 4 2 11 11 N 1.46900 * 109.47450 * 303.28513 * 10 8 4 12 12 C 1.46901 * 110.99890 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47401 * 34.99821 * 12 11 10 14 14 C 1.53002 * 109.46860 * 274.99873 * 12 11 10 15 15 C 1.50701 * 109.46921 * 154.99793 * 12 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09002 * 109.47331 * 240.00143 * 1 2 3 24 24 H 1.08997 * 109.46955 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47119 * 119.99726 * 1 2 3 26 26 H 1.08999 * 110.37110 * 274.67949 * 5 4 2 27 27 H 1.09005 * 110.36953 * 36.89393 * 5 4 2 28 28 H 1.08996 * 111.00603 * 155.08613 * 6 5 4 29 29 H 1.08997 * 111.00239 * 278.89842 * 6 5 4 30 30 H 1.08996 * 110.85286 * 206.30407 * 7 6 5 31 31 H 1.08992 * 110.69655 * 82.95131 * 7 6 5 32 32 H 1.09002 * 109.46846 * 183.28152 * 10 8 4 33 33 H 1.09005 * 109.47132 * 63.28896 * 10 8 4 34 34 H 1.00901 * 110.99385 * 303.95419 * 11 10 8 35 35 H 1.09002 * 109.47075 * 299.99593 * 14 12 11 36 36 H 1.08996 * 109.47407 * 60.00550 * 14 12 11 37 37 H 1.09000 * 109.46986 * 180.02562 * 14 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5729 -2.5103 -0.0019 6 6 2.6545 -3.4345 -0.6149 7 6 3.9582 -2.8226 -0.0313 8 6 3.6440 -1.3120 -0.0001 9 1 4.0646 -0.8276 -0.8813 10 6 4.2285 -0.6847 1.2671 11 7 3.8168 0.7229 1.3514 12 6 4.3614 1.3593 2.5582 13 1 5.3499 0.9514 2.7695 14 6 3.4327 1.0849 3.7428 15 6 4.4683 2.8462 2.3374 16 1 4.1618 3.2756 1.3950 17 6 4.9563 3.6586 3.3389 18 7 5.3290 3.1357 4.4867 19 14 5.0880 5.5017 3.0654 20 1 4.6072 5.8353 1.7006 21 1 4.2563 6.2118 4.0701 22 1 6.5047 5.9233 3.2085 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.3400 -2.8223 1.0162 27 1 0.6723 -2.5184 -0.6158 28 1 2.5226 -4.4642 -0.2825 29 1 2.6491 -3.3738 -1.7031 30 1 4.8080 -3.0265 -0.6827 31 1 4.1434 -3.1985 0.9749 32 1 5.3164 -0.7437 1.2331 33 1 3.8625 -1.2233 2.1413 34 1 4.0884 1.2293 0.5220 35 1 2.4442 1.4929 3.5315 36 1 3.3555 0.0095 3.9025 37 1 3.8365 1.5575 4.6381 38 1 5.6726 3.7072 5.1911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379460208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:50 Heat of formation + Delta-G solvation = -41.389147 kcal Electronic energy + Delta-G solvation = -18250.821827 eV Core-core repulsion = 15513.805801 eV Total energy + Delta-G solvation = -2737.016026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89837 -38.18702 -37.35527 -34.57234 -32.77258 -31.70797 -29.85036 -29.02256 -27.35012 -25.33169 -23.33229 -22.04357 -21.51630 -19.70160 -18.58031 -17.82724 -17.25253 -16.72660 -16.04951 -15.59698 -15.41641 -14.95168 -14.75204 -14.38026 -14.04749 -13.68939 -13.55977 -13.18435 -13.08365 -12.95829 -12.72905 -12.69106 -12.59178 -12.43106 -12.23326 -12.11348 -11.96442 -11.59266 -11.48206 -10.88681 -10.59593 -10.29848 -9.40666 -8.61100 -8.14828 -6.27797 1.35878 1.37139 1.51161 2.09354 2.37578 2.40117 3.11950 3.56608 3.71554 3.94095 4.01897 4.22508 4.33897 4.44086 4.58597 4.60656 4.66951 4.72119 4.75608 4.82016 4.94035 5.00091 5.02517 5.12451 5.16560 5.20213 5.21489 5.42259 5.43951 5.64325 5.72242 5.86624 6.23347 6.56296 6.88046 6.94301 7.09323 7.42292 7.71034 8.91162 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.006549 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.911847 B = 4274.618100 C = 4647.072324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.501 3.499 3 O -0.543 6.543 4 N -0.617 5.617 5 C 0.095 3.905 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.140 3.860 9 H 0.051 0.949 10 C 0.049 3.951 11 N -0.652 5.652 12 C 0.211 3.789 13 H -0.041 1.041 14 C -0.100 4.100 15 C -0.529 4.529 16 H 0.046 0.954 17 C 0.010 3.990 18 N -0.920 5.920 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.276 1.276 22 H -0.275 1.275 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.012 0.988 33 H 0.053 0.947 34 H 0.330 0.670 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.055 0.945 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 -15.793 -10.447 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.290 3.710 3 O -0.418 6.418 4 N -0.353 5.353 5 C -0.027 4.027 6 C -0.156 4.156 7 C -0.159 4.159 8 C 0.035 3.965 9 H 0.070 0.930 10 C -0.081 4.081 11 N -0.285 5.285 12 C 0.103 3.897 13 H -0.024 1.024 14 C -0.159 4.159 15 C -0.567 4.567 16 H 0.064 0.936 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.200 1.200 23 H 0.112 0.888 24 H 0.094 0.906 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.715 -15.217 -9.993 20.183 hybrid contribution 1.359 1.319 0.192 1.904 sum -7.356 -13.898 -9.801 18.529 Atomic orbital electron populations 1.21812 0.89450 1.04849 1.05256 1.21052 0.91305 0.82404 0.76243 1.90751 1.70723 1.32249 1.48035 1.48525 1.05936 1.06481 1.74392 1.22527 0.97828 0.80859 1.01510 1.22800 0.92186 0.99610 1.01037 1.22696 0.99817 0.90579 1.02815 1.21571 0.82040 0.97423 0.95417 0.93036 1.22471 0.95804 0.91689 0.98164 1.61072 1.62032 1.00867 1.04507 1.18955 0.89618 0.92649 0.88516 1.02352 1.21419 0.97983 0.96128 1.00342 1.21565 1.41787 0.93374 0.99993 0.93583 1.25757 0.94845 1.03448 0.94772 1.70032 1.44156 1.36595 1.05211 0.85420 0.77869 0.79692 0.78092 1.19830 1.20132 1.20012 0.88793 0.90570 0.87091 0.91545 0.88388 0.87361 0.89874 0.88820 0.90419 0.97027 0.92859 0.85066 0.96351 0.96484 0.92575 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.33 71.23 0.66 -2.89 16 2 C 0.50 17.02 7.53 87.66 0.66 17.68 16 3 O -0.54 -24.93 13.25 -3.01 -0.04 -24.97 16 4 N -0.62 -17.35 3.06 -788.05 -2.41 -19.76 16 5 C 0.09 1.60 6.70 86.86 0.58 2.19 16 6 C -0.12 -1.54 7.09 32.07 0.23 -1.32 16 7 C -0.12 -2.32 6.50 31.87 0.21 -2.11 16 8 C 0.14 4.19 3.28 45.34 0.15 4.34 16 9 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 10 C 0.05 1.96 5.06 86.30 0.44 2.40 16 11 N -0.65 -32.35 3.11 -495.44 -1.54 -33.89 16 12 C 0.21 12.19 2.60 44.17 0.11 12.30 16 13 H -0.04 -2.57 7.80 -2.39 -0.02 -2.58 16 14 C -0.10 -5.59 9.19 71.98 0.66 -4.93 16 15 C -0.53 -32.78 8.59 25.60 0.22 -32.56 16 16 H 0.05 2.93 7.62 -2.91 -0.02 2.91 16 17 C 0.01 0.61 5.30 84.66 0.45 1.06 16 18 N -0.92 -56.71 11.32 21.45 0.24 -56.46 16 19 Si 0.96 47.36 29.54 68.60 2.03 49.38 16 20 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 25 H 0.11 1.72 7.84 -2.39 -0.02 1.70 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.15 7.47 -2.38 -0.02 1.13 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.51 7.80 -2.39 -0.02 1.49 16 32 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 33 H 0.05 2.15 7.36 -2.38 -0.02 2.13 16 34 H 0.33 17.46 6.91 -89.69 -0.62 16.84 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.02 0.83 7.45 -2.39 -0.02 0.81 16 37 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.43 300.57 3.05 -73.38 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.41 Total: 16.16 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.37 Total: -3.84 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.71 Total: -110.12 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.43 3.05 -73.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379460208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.990 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds