Wall clock time and date at job start Mon Mar 30 2020 03:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99943 * 2 1 4 4 C 1.50694 * 112.84761 * 55.94774 * 3 2 1 5 5 O 1.21283 * 119.99782 * 257.40057 * 4 3 2 6 6 N 1.34778 * 120.00365 * 77.40418 * 4 3 2 7 7 C 1.46489 * 120.00072 * 357.33208 * 6 4 3 8 8 C 1.46502 * 120.00027 * 177.33149 * 6 4 3 9 9 H 1.09003 * 109.46994 * 359.97438 * 8 6 4 10 10 C 1.52998 * 109.47148 * 240.00216 * 8 6 4 11 11 C 1.50702 * 109.47424 * 119.99908 * 8 6 4 12 12 H 1.08008 * 119.99377 * 34.77464 * 11 8 6 13 13 C 1.37871 * 120.00254 * 214.78273 * 11 8 6 14 14 N 1.31517 * 119.99819 * 184.59356 * 13 11 8 15 15 Si 1.86800 * 120.00188 * 4.58691 * 13 11 8 16 16 H 1.48499 * 109.47156 * 94.52993 * 15 13 11 17 17 H 1.48502 * 109.47137 * 214.53496 * 15 13 11 18 18 H 1.48505 * 109.46784 * 334.52903 * 15 13 11 19 19 C 1.53774 * 113.61456 * 284.74776 * 3 2 1 20 20 C 1.53962 * 87.02032 * 220.04970 * 19 3 2 21 21 C 1.53785 * 113.61252 * 187.13597 * 3 2 1 22 22 H 1.09003 * 109.46905 * 174.84336 * 1 2 3 23 23 H 1.08998 * 109.47192 * 54.84357 * 1 2 3 24 24 H 1.09000 * 109.46724 * 294.83863 * 1 2 3 25 25 H 1.00906 * 110.99953 * 123.95497 * 2 1 3 26 26 H 1.09001 * 109.47793 * 91.90009 * 7 6 4 27 27 H 1.09002 * 109.47474 * 211.90105 * 7 6 4 28 28 H 1.09007 * 109.47502 * 331.89976 * 7 6 4 29 29 H 1.09008 * 109.47165 * 184.88040 * 10 8 6 30 30 H 1.09002 * 109.46788 * 304.87649 * 10 8 6 31 31 H 1.08996 * 109.47601 * 64.87700 * 10 8 6 32 32 H 0.97002 * 119.99679 * 179.97438 * 14 13 11 33 33 H 1.09005 * 113.61357 * 334.56606 * 19 3 2 34 34 H 1.09002 * 113.61773 * 105.47194 * 19 3 2 35 35 H 1.09003 * 113.53520 * 270.81190 * 20 19 3 36 36 H 1.08990 * 113.74099 * 139.94502 * 20 19 3 37 37 H 1.08994 * 113.62096 * 254.52759 * 21 3 2 38 38 H 1.08997 * 113.61117 * 25.35590 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4791 2.1964 1.1506 5 8 0.6007 3.0119 0.9659 6 7 1.9936 2.0279 2.3849 7 6 3.0132 1.0027 2.6198 8 6 1.5332 2.8703 3.4916 9 1 0.7799 3.5689 3.1274 10 6 2.7173 3.6511 4.0650 11 6 0.9351 2.0022 4.5685 12 1 1.3478 1.0235 4.7644 13 6 -0.1390 2.4572 5.3035 14 7 -0.6037 1.7391 6.3025 15 14 -0.9341 4.0938 4.8805 16 1 -2.0902 3.8637 3.9773 17 1 -1.4024 4.7532 6.1259 18 1 0.0584 4.9655 4.2019 19 6 1.8813 2.0750 -1.3626 20 6 3.2790 2.6593 -1.0875 21 6 3.5215 1.4455 -0.1750 22 1 -0.3633 -1.0235 -0.0924 23 1 -0.3633 0.5917 -0.8402 24 1 -0.3633 0.4317 0.9326 25 1 1.8306 -0.5262 0.7814 26 1 4.0038 1.4404 2.4973 27 1 2.9107 0.6137 3.6329 28 1 2.8837 0.1907 1.9041 29 1 2.3928 4.2111 4.9421 30 1 3.5073 2.9561 4.3496 31 1 3.0956 4.3425 3.3120 32 1 -1.3592 2.0594 6.8198 33 1 1.8541 1.3876 -2.2081 34 1 1.0928 2.8266 -1.4013 35 1 3.2562 3.6094 -0.5536 36 1 3.9254 2.6822 -1.9648 37 1 4.0551 1.6895 0.7435 38 1 3.9436 0.5849 -0.6940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380110694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:16 Heat of formation + Delta-G solvation = -3.487301 kcal Electronic energy + Delta-G solvation = -18771.509287 eV Core-core repulsion = 16036.136808 eV Total energy + Delta-G solvation = -2735.372479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55365 -37.31138 -35.47077 -33.89132 -32.66967 -30.41673 -26.55184 -26.34184 -25.32593 -25.21537 -23.52884 -21.73970 -19.59592 -18.11323 -17.02650 -16.45372 -15.99992 -15.58655 -15.06686 -14.65517 -13.98735 -13.80909 -13.18776 -12.92085 -12.59587 -12.42191 -12.36598 -12.08105 -11.90852 -11.73614 -11.52642 -11.45153 -11.11437 -10.81049 -10.75879 -10.54956 -10.46652 -10.06868 -9.77606 -9.62055 -9.26613 -8.64778 -8.16889 -7.71794 -6.21535 -4.23801 3.16941 3.26346 3.35284 3.42079 3.74367 4.34198 4.34893 4.59940 4.80499 4.90244 4.97034 5.19239 5.31120 5.58176 5.68452 5.76859 5.82534 5.86343 5.88947 6.00185 6.16837 6.20213 6.21704 6.29544 6.31671 6.37749 6.41828 6.54657 6.89247 6.95436 7.07824 7.38143 7.44078 7.60002 8.08914 8.44663 8.78850 8.88022 9.41125 10.90190 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.008550 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.608011 B = 3274.241184 C = 3377.370453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.661 5.661 3 C 0.064 3.936 4 C 0.499 3.501 5 O -0.551 6.551 6 N -0.584 5.584 7 C 0.080 3.920 8 C 0.218 3.782 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.525 4.525 12 H 0.077 0.923 13 C 0.079 3.921 14 N -0.891 5.891 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.261 1.261 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.131 4.131 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.341 0.659 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 -1.668 -11.701 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.293 5.293 3 C -0.031 4.031 4 C 0.284 3.716 5 O -0.429 6.429 6 N -0.315 5.315 7 C -0.064 4.064 8 C 0.118 3.882 9 H 0.084 0.916 10 C -0.204 4.204 11 C -0.564 4.564 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.528 5.528 15 Si 0.701 3.299 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.185 1.185 19 C -0.147 4.147 20 C -0.180 4.180 21 C -0.168 4.168 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.161 0.839 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.539 -1.324 -12.284 14.474 hybrid contribution -0.739 0.896 0.999 1.532 sum 6.800 -0.427 -11.285 13.182 Atomic orbital electron populations 1.22205 0.87294 1.01715 1.01521 1.61040 1.08734 1.10674 1.48880 1.22569 0.96630 0.88950 0.94929 1.20804 0.82772 0.83896 0.84144 1.90618 1.30999 1.37224 1.84027 1.48339 1.39179 1.35330 1.08674 1.21827 0.90734 0.90802 1.03053 1.19419 0.93492 0.90769 0.84568 0.91576 1.22204 0.99448 0.99052 0.99716 1.21097 1.15307 1.03941 1.16006 0.90458 1.24953 0.95971 0.97132 0.94396 1.69895 1.25398 1.38369 1.19091 0.86880 0.80648 0.84534 0.77853 1.19963 1.21190 1.18503 1.22858 0.97726 0.99155 0.94970 1.22773 0.97427 0.97895 0.99889 1.23265 0.93619 0.99122 1.00830 0.91415 0.91498 0.94788 0.83893 0.93350 0.90033 0.92521 0.92390 0.93371 0.95615 0.92389 0.89028 0.90486 0.90307 0.90974 0.90350 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.25 60.06 0.62 0.96 16 2 N -0.66 -9.66 6.71 -107.53 -0.72 -10.38 16 3 C 0.06 1.00 0.39 -131.95 -0.05 0.95 16 4 C 0.50 10.21 5.26 -10.99 -0.06 10.16 16 5 O -0.55 -13.46 15.47 5.55 0.09 -13.37 16 6 N -0.58 -12.05 2.75 -175.27 -0.48 -12.53 16 7 C 0.08 1.30 7.86 59.84 0.47 1.77 16 8 C 0.22 5.25 2.26 -69.08 -0.16 5.09 16 9 H 0.07 1.77 3.86 -51.93 -0.20 1.57 16 10 C -0.15 -3.06 9.25 37.16 0.34 -2.72 16 11 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 12 H 0.08 2.22 6.80 -52.48 -0.36 1.87 16 13 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 14 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 15 Si 0.87 22.26 27.29 -169.99 -4.64 17.62 16 16 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.26 -6.47 6.40 56.52 0.36 -6.11 16 19 C -0.11 -1.55 6.86 -25.83 -0.18 -1.73 16 20 C -0.14 -1.80 7.81 -25.82 -0.20 -2.00 16 21 C -0.13 -1.65 6.43 -25.91 -0.17 -1.82 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 24 H 0.03 0.64 7.38 -51.93 -0.38 0.26 16 25 H 0.34 4.77 6.68 -39.29 -0.26 4.50 16 26 H 0.05 0.68 6.79 -51.93 -0.35 0.32 16 27 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 28 H 0.06 0.79 4.37 -51.92 -0.23 0.56 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.05 0.92 7.51 -51.93 -0.39 0.53 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.99 5.28 -51.93 -0.27 0.72 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -31.61 293.00 -6.05 -37.66 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.71 Total: 4.27 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.22 Total: -1.81 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.43 Total: -48.79 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.64 Total: 17.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.61 -6.05 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380110694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.173 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds