Wall clock time and date at job start Mon Mar 30 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99943 * 2 1 4 4 C 1.50694 * 112.84761 * 55.94774 * 3 2 1 5 5 O 1.21283 * 119.99782 * 257.40057 * 4 3 2 6 6 N 1.34778 * 120.00365 * 77.40418 * 4 3 2 7 7 C 1.46489 * 120.00072 * 357.33208 * 6 4 3 8 8 C 1.46502 * 120.00027 * 177.33149 * 6 4 3 9 9 H 1.09003 * 109.46994 * 359.97438 * 8 6 4 10 10 C 1.52998 * 109.47148 * 240.00216 * 8 6 4 11 11 C 1.50702 * 109.47424 * 119.99908 * 8 6 4 12 12 H 1.08008 * 119.99377 * 34.77464 * 11 8 6 13 13 C 1.37871 * 120.00254 * 214.78273 * 11 8 6 14 14 N 1.31517 * 119.99819 * 184.59356 * 13 11 8 15 15 Si 1.86800 * 120.00188 * 4.58691 * 13 11 8 16 16 H 1.48499 * 109.47156 * 94.52993 * 15 13 11 17 17 H 1.48502 * 109.47137 * 214.53496 * 15 13 11 18 18 H 1.48505 * 109.46784 * 334.52903 * 15 13 11 19 19 C 1.53774 * 113.61456 * 284.74776 * 3 2 1 20 20 C 1.53962 * 87.02032 * 220.04970 * 19 3 2 21 21 C 1.53785 * 113.61252 * 187.13597 * 3 2 1 22 22 H 1.09003 * 109.46905 * 174.84336 * 1 2 3 23 23 H 1.08998 * 109.47192 * 54.84357 * 1 2 3 24 24 H 1.09000 * 109.46724 * 294.83863 * 1 2 3 25 25 H 1.00906 * 110.99953 * 123.95497 * 2 1 3 26 26 H 1.09001 * 109.47793 * 91.90009 * 7 6 4 27 27 H 1.09002 * 109.47474 * 211.90105 * 7 6 4 28 28 H 1.09007 * 109.47502 * 331.89976 * 7 6 4 29 29 H 1.09008 * 109.47165 * 184.88040 * 10 8 6 30 30 H 1.09002 * 109.46788 * 304.87649 * 10 8 6 31 31 H 1.08996 * 109.47601 * 64.87700 * 10 8 6 32 32 H 0.97002 * 119.99679 * 179.97438 * 14 13 11 33 33 H 1.09005 * 113.61357 * 334.56606 * 19 3 2 34 34 H 1.09002 * 113.61773 * 105.47194 * 19 3 2 35 35 H 1.09003 * 113.53520 * 270.81190 * 20 19 3 36 36 H 1.08990 * 113.74099 * 139.94502 * 20 19 3 37 37 H 1.08994 * 113.62096 * 254.52759 * 21 3 2 38 38 H 1.08997 * 113.61117 * 25.35590 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4791 2.1964 1.1506 5 8 0.6007 3.0119 0.9659 6 7 1.9936 2.0279 2.3849 7 6 3.0132 1.0027 2.6198 8 6 1.5332 2.8703 3.4916 9 1 0.7799 3.5689 3.1274 10 6 2.7173 3.6511 4.0650 11 6 0.9351 2.0022 4.5685 12 1 1.3478 1.0235 4.7644 13 6 -0.1390 2.4572 5.3035 14 7 -0.6037 1.7391 6.3025 15 14 -0.9341 4.0938 4.8805 16 1 -2.0902 3.8637 3.9773 17 1 -1.4024 4.7532 6.1259 18 1 0.0584 4.9655 4.2019 19 6 1.8813 2.0750 -1.3626 20 6 3.2790 2.6593 -1.0875 21 6 3.5215 1.4455 -0.1750 22 1 -0.3633 -1.0235 -0.0924 23 1 -0.3633 0.5917 -0.8402 24 1 -0.3633 0.4317 0.9326 25 1 1.8306 -0.5262 0.7814 26 1 4.0038 1.4404 2.4973 27 1 2.9107 0.6137 3.6329 28 1 2.8837 0.1907 1.9041 29 1 2.3928 4.2111 4.9421 30 1 3.5073 2.9561 4.3496 31 1 3.0956 4.3425 3.3120 32 1 -1.3592 2.0594 6.8198 33 1 1.8541 1.3876 -2.2081 34 1 1.0928 2.8266 -1.4013 35 1 3.2562 3.6094 -0.5536 36 1 3.9254 2.6822 -1.9648 37 1 4.0551 1.6895 0.7435 38 1 3.9436 0.5849 -0.6940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380110694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:15 Heat of formation + Delta-G solvation = -26.864484 kcal Electronic energy + Delta-G solvation = -18772.522997 eV Core-core repulsion = 16036.136808 eV Total energy + Delta-G solvation = -2736.386190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93752 -38.76145 -37.21229 -35.09833 -34.69685 -32.24111 -27.97075 -27.60415 -27.32052 -26.34939 -24.92260 -23.13997 -21.17708 -19.67062 -18.98440 -17.79011 -17.63962 -16.93293 -16.49264 -16.33217 -15.47420 -15.33222 -14.79070 -14.50837 -14.34494 -14.17258 -13.85375 -13.35998 -13.20745 -13.11173 -13.04431 -12.96240 -12.73537 -12.66487 -12.33943 -11.85565 -11.83573 -11.70486 -11.31364 -11.17980 -11.03988 -10.83692 -9.56710 -9.39910 -8.42786 -6.46022 1.19764 1.26754 1.36018 1.61720 2.18846 2.21850 2.98490 3.14355 3.42419 3.65006 3.70194 3.88717 4.16326 4.36856 4.43271 4.43821 4.53811 4.56878 4.69389 4.73760 4.82533 4.89110 4.90772 4.93111 5.05381 5.08018 5.12268 5.22221 5.27763 5.38440 5.48599 5.72476 5.79461 6.10152 6.21449 6.58918 6.68798 7.17957 7.30208 8.72356 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.008550 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.608011 B = 3274.241184 C = 3377.370453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.643 5.643 3 C 0.056 3.944 4 C 0.491 3.509 5 O -0.601 6.601 6 N -0.591 5.591 7 C 0.077 3.923 8 C 0.217 3.783 9 H 0.038 0.962 10 C -0.138 4.138 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.030 3.970 14 N -0.932 5.932 15 Si 0.923 3.077 16 H -0.288 1.288 17 H -0.272 1.272 18 H -0.252 1.252 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.115 4.115 22 H 0.093 0.907 23 H 0.066 0.934 24 H -0.011 1.011 25 H 0.346 0.654 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.403 -2.091 -13.537 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.038 4.038 4 C 0.278 3.722 5 O -0.481 6.481 6 N -0.322 5.322 7 C -0.065 4.065 8 C 0.114 3.886 9 H 0.056 0.944 10 C -0.196 4.196 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.170 4.170 14 N -0.571 5.571 15 Si 0.748 3.252 16 H -0.215 1.215 17 H -0.197 1.197 18 H -0.176 1.176 19 C -0.147 4.147 20 C -0.173 4.173 21 C -0.152 4.152 22 H 0.112 0.888 23 H 0.085 0.915 24 H 0.008 0.992 25 H 0.166 0.834 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.877 -1.765 -14.122 17.324 hybrid contribution -1.445 0.950 1.518 2.301 sum 8.432 -0.815 -12.604 15.186 Atomic orbital electron populations 1.22181 0.88066 1.02922 0.99138 1.61136 1.07836 1.09908 1.48608 1.22690 0.99221 0.88446 0.93460 1.21766 0.81799 0.83601 0.85037 1.90584 1.33154 1.39555 1.84846 1.48306 1.39950 1.35829 1.08067 1.22057 0.91009 0.90665 1.02803 1.19208 0.94269 0.90465 0.84636 0.94431 1.22056 0.98528 0.99316 0.99717 1.21336 1.14746 1.03320 1.16250 0.92653 1.25589 0.96910 0.99889 0.94607 1.69985 1.26491 1.40116 1.20506 0.86102 0.79430 0.81873 0.77746 1.21502 1.19719 1.17642 1.22932 0.98077 0.98917 0.94782 1.22743 0.96672 0.96970 1.00946 1.23304 0.90608 1.00080 1.01224 0.88799 0.91520 0.99202 0.83358 0.90038 0.91777 0.90017 0.93164 0.91484 0.93729 0.92246 0.86734 0.93299 0.92255 0.87739 0.90052 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.25 127.69 1.31 2.12 16 2 N -0.64 -17.21 6.71 -494.13 -3.31 -20.53 16 3 C 0.06 1.64 0.39 3.30 0.00 1.64 16 4 C 0.49 19.90 5.26 87.65 0.46 20.36 16 5 O -0.60 -30.04 15.47 -3.04 -0.05 -30.09 16 6 N -0.59 -23.92 2.75 -826.81 -2.28 -26.20 16 7 C 0.08 2.33 7.86 127.77 1.00 3.34 16 8 C 0.22 10.42 2.26 44.24 0.10 10.52 16 9 H 0.04 2.04 3.86 -2.39 -0.01 2.03 16 10 C -0.14 -5.58 9.25 71.98 0.67 -4.92 16 11 C -0.52 -28.78 8.73 25.60 0.22 -28.55 16 12 H 0.06 3.26 6.80 -2.91 -0.02 3.24 16 13 C 0.03 1.73 5.47 84.65 0.46 2.20 16 14 N -0.93 -57.13 13.96 21.45 0.30 -56.83 16 15 Si 0.92 46.95 27.29 68.60 1.87 48.82 16 16 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 17 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.25 -12.38 6.40 99.48 0.64 -11.74 16 19 C -0.11 -2.87 6.86 31.18 0.21 -2.65 16 20 C -0.14 -2.97 7.81 31.18 0.24 -2.73 16 21 C -0.11 -2.40 6.43 31.12 0.20 -2.20 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.07 2.01 7.71 -2.39 -0.02 1.99 16 24 H -0.01 -0.43 7.38 -2.39 -0.02 -0.45 16 25 H 0.35 8.70 6.68 -89.69 -0.60 8.10 16 26 H 0.08 1.96 6.79 -2.39 -0.02 1.94 16 27 H 0.06 2.19 6.55 -2.39 -0.02 2.17 16 28 H 0.08 2.03 4.37 -2.38 -0.01 2.02 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.07 2.43 7.51 -2.39 -0.02 2.41 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.05 1.56 7.42 -2.39 -0.02 1.55 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.69 5.28 -2.39 -0.01 1.68 16 38 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.19 293.00 1.81 -69.38 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.39 Total: 16.32 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 4.88 Total: -0.88 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -5.29 Total: -103.56 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.87 Total: 48.82 kcal Total: -71.19 1.81 -69.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380110694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.518 kcal (2) G-P(sol) polarization free energy of solvation -71.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds