Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00279 * 2 1 4 4 C 1.50709 * 112.84898 * 54.28519 * 3 2 1 5 5 O 1.21280 * 119.99640 * 231.09654 * 4 3 2 6 6 N 1.34769 * 119.99979 * 51.09182 * 4 3 2 7 7 C 1.46507 * 120.00223 * 4.86531 * 6 4 3 8 8 C 1.46498 * 120.00018 * 184.86461 * 6 4 3 9 9 H 1.09000 * 109.47324 * 359.97438 * 8 6 4 10 10 C 1.52999 * 109.47271 * 120.00034 * 8 6 4 11 11 C 1.50701 * 109.46946 * 240.00169 * 8 6 4 12 12 H 1.07996 * 120.00176 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99965 * 180.02562 * 11 8 6 14 14 N 1.31515 * 119.99916 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 119.99951 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47132 * 90.00258 * 15 13 11 17 17 H 1.48503 * 109.46973 * 210.00170 * 15 13 11 18 18 H 1.48502 * 109.46892 * 329.99703 * 15 13 11 19 19 C 1.53787 * 113.61604 * 185.47729 * 3 2 1 20 20 C 1.53785 * 87.16809 * 140.02498 * 19 3 2 21 21 C 1.53778 * 113.69191 * 283.01580 * 3 2 1 22 22 H 1.09007 * 109.47002 * 64.83161 * 1 2 3 23 23 H 1.08993 * 109.47708 * 184.83089 * 1 2 3 24 24 H 1.08998 * 109.47284 * 304.83781 * 1 2 3 25 25 H 1.00896 * 111.00113 * 236.04394 * 2 1 3 26 26 H 1.08998 * 109.47205 * 84.99444 * 7 6 4 27 27 H 1.08995 * 109.47051 * 204.99837 * 7 6 4 28 28 H 1.09001 * 109.46985 * 324.99913 * 7 6 4 29 29 H 1.09000 * 109.46820 * 60.00439 * 10 8 6 30 30 H 1.09006 * 109.47188 * 179.97438 * 10 8 6 31 31 H 1.08995 * 109.47197 * 299.99742 * 10 8 6 32 32 H 0.97002 * 119.99674 * 179.97438 * 14 13 11 33 33 H 1.08998 * 113.61216 * 254.61305 * 19 3 2 34 34 H 1.08992 * 113.61041 * 25.43482 * 19 3 2 35 35 H 1.08997 * 113.61361 * 89.16357 * 20 19 3 36 36 H 1.09000 * 113.61039 * 220.06229 * 20 19 3 37 37 H 1.08992 * 113.61745 * 334.55686 * 21 3 2 38 38 H 1.09005 * 113.61453 * 105.37698 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4484 2.2083 1.1276 5 8 0.9661 3.2967 0.8962 6 7 1.4949 1.7471 2.3931 7 6 2.1720 0.4815 2.6872 8 6 0.8685 2.5112 3.4747 9 1 0.4188 3.4165 3.0669 10 6 -0.2137 1.6591 4.1408 11 6 1.9123 2.8853 4.4953 12 1 2.9394 2.5836 4.3527 13 6 1.5558 3.6117 5.6116 14 7 2.4666 3.9378 6.5025 15 14 -0.2210 4.1329 5.8586 16 1 -0.9443 3.0814 6.6177 17 1 -0.2617 5.4083 6.6183 18 1 -0.8692 4.3235 4.5362 19 6 3.5258 1.4438 -0.1345 20 6 3.3106 2.6490 -1.0651 21 6 1.9209 2.0619 -1.3720 22 1 -0.3633 0.4371 -0.9302 23 1 -0.3634 -1.0239 0.0865 24 1 -0.3634 0.5870 0.8435 25 1 1.8306 -0.5261 -0.7813 26 1 3.2378 0.6632 2.8249 27 1 1.7562 0.0501 3.5976 28 1 2.0256 -0.2101 1.8575 29 1 0.2364 0.7541 4.5487 30 1 -0.6795 2.2275 4.9459 31 1 -0.9687 1.3886 3.4026 32 1 2.2158 4.4492 7.2877 33 1 4.0344 1.6959 0.7960 34 1 3.9615 0.5787 -0.6341 35 1 3.2751 3.6042 -0.5413 36 1 3.9800 2.6614 -1.9253 37 1 1.9178 1.3665 -2.2112 38 1 1.1330 2.8121 -1.4410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380110700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = 5.885640 kcal Electronic energy + Delta-G solvation = -18721.598906 eV Core-core repulsion = 15986.632868 eV Total energy + Delta-G solvation = -2734.966038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53366 -37.44180 -35.44601 -33.92596 -32.55777 -30.32472 -26.39372 -26.06483 -25.44686 -25.10536 -23.93508 -21.69480 -19.78880 -17.78288 -16.92934 -16.33484 -15.89916 -15.74687 -14.79431 -14.37959 -14.29890 -13.74844 -13.65291 -12.94671 -12.80926 -12.38040 -12.23427 -12.15799 -12.01447 -11.74050 -11.61186 -11.32242 -11.10321 -10.87196 -10.73594 -10.63469 -10.28872 -10.09659 -9.63005 -9.28754 -9.03771 -8.60594 -8.33579 -7.56028 -6.11011 -4.10773 3.18349 3.25100 3.38254 3.40933 3.80905 4.11295 4.37891 4.62322 4.78999 4.92451 5.03093 5.21918 5.41623 5.46227 5.53348 5.63559 5.80821 5.96939 6.03304 6.07327 6.15269 6.18278 6.26405 6.34841 6.35771 6.41595 6.53263 6.67891 6.81640 6.89055 7.18590 7.29289 7.44560 7.68630 8.27895 8.53883 8.89647 8.97434 9.50424 11.01939 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.007952 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.723405 B = 3520.177843 C = 3709.000335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.664 5.664 3 C 0.073 3.927 4 C 0.534 3.466 5 O -0.554 6.554 6 N -0.571 5.571 7 C 0.066 3.934 8 C 0.227 3.773 9 H 0.059 0.941 10 C -0.160 4.160 11 C -0.523 4.523 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.264 1.264 19 C -0.122 4.122 20 C -0.138 4.138 21 C -0.155 4.155 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.343 0.657 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -9.256 -13.647 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.295 5.295 3 C -0.021 4.021 4 C 0.319 3.681 5 O -0.433 6.433 6 N -0.299 5.299 7 C -0.077 4.077 8 C 0.125 3.875 9 H 0.077 0.923 10 C -0.217 4.217 11 C -0.561 4.561 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.189 1.189 19 C -0.160 4.160 20 C -0.175 4.175 21 C -0.195 4.195 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.162 0.838 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.580 -8.678 -12.853 15.588 hybrid contribution -1.004 0.487 -0.421 1.193 sum -2.584 -8.190 -13.273 15.810 Atomic orbital electron populations 1.22221 0.87388 1.02063 1.00962 1.60335 1.08271 1.12138 1.48765 1.22493 0.96910 0.88284 0.94417 1.19432 0.79307 0.85898 0.83419 1.90641 1.47260 1.21560 1.83802 1.47716 1.53166 1.22710 1.06357 1.22122 0.96293 0.86102 1.03187 1.19297 0.91986 0.90898 0.85344 0.92330 1.22450 0.98608 1.01182 0.99499 1.21162 0.95768 1.34982 1.04209 0.90377 1.24875 0.97275 0.95141 0.95547 1.69880 1.33401 1.38851 1.11265 0.86916 0.85664 0.77388 0.78691 1.20443 1.22171 1.18926 1.23026 0.93355 0.98726 1.00880 1.22766 0.96521 0.98702 0.99555 1.23477 0.99269 1.00820 0.95897 0.95690 0.91180 0.91206 0.83760 0.94124 0.91748 0.87876 0.92403 0.93253 0.94993 0.92512 0.90320 0.89248 0.89415 0.91245 0.90186 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.37 60.06 0.62 0.90 16 2 N -0.66 -8.03 4.07 -107.53 -0.44 -8.47 16 3 C 0.07 1.09 0.38 -131.94 -0.05 1.04 16 4 C 0.53 10.88 5.08 -10.98 -0.06 10.82 16 5 O -0.55 -13.32 15.18 5.56 0.08 -13.23 16 6 N -0.57 -12.13 2.70 -175.26 -0.47 -12.60 16 7 C 0.07 1.19 9.19 59.85 0.55 1.74 16 8 C 0.23 5.63 2.22 -69.08 -0.15 5.47 16 9 H 0.06 1.62 5.97 -51.93 -0.31 1.31 16 10 C -0.16 -3.52 8.66 37.16 0.32 -3.20 16 11 C -0.52 -14.84 8.95 -34.44 -0.31 -15.15 16 12 H 0.08 2.40 7.89 -52.49 -0.41 1.98 16 13 C 0.07 2.15 5.45 -17.82 -0.10 2.06 16 14 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 15 Si 0.88 22.28 24.37 -169.99 -4.14 18.14 16 16 H -0.28 -6.68 6.87 56.52 0.39 -6.30 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.26 -6.60 6.53 56.52 0.37 -6.23 16 19 C -0.12 -1.60 7.15 -25.91 -0.19 -1.79 16 20 C -0.14 -1.83 7.78 -25.83 -0.20 -2.03 16 21 C -0.15 -2.07 6.91 -25.83 -0.18 -2.25 16 22 H 0.02 0.29 8.01 -51.93 -0.42 -0.13 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.08 6.91 -51.93 -0.36 0.72 16 25 H 0.34 3.19 8.74 -39.29 -0.34 2.85 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.17 6.44 -51.93 -0.33 0.83 16 28 H 0.10 1.57 4.90 -51.93 -0.25 1.31 16 29 H 0.06 1.20 6.66 -51.93 -0.35 0.85 16 30 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -32.30 292.49 -5.41 -37.71 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.89 Total: 3.09 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.27 Total: -2.38 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.14 Total: -47.74 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.30 -5.41 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380110700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.599 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds