Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00279 * 2 1 4 4 C 1.50709 * 112.84898 * 54.28519 * 3 2 1 5 5 O 1.21280 * 119.99640 * 231.09654 * 4 3 2 6 6 N 1.34769 * 119.99979 * 51.09182 * 4 3 2 7 7 C 1.46507 * 120.00223 * 4.86531 * 6 4 3 8 8 C 1.46498 * 120.00018 * 184.86461 * 6 4 3 9 9 H 1.09000 * 109.47324 * 359.97438 * 8 6 4 10 10 C 1.52999 * 109.47271 * 120.00034 * 8 6 4 11 11 C 1.50701 * 109.46946 * 240.00169 * 8 6 4 12 12 H 1.07996 * 120.00176 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99965 * 180.02562 * 11 8 6 14 14 N 1.31515 * 119.99916 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 119.99951 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47132 * 90.00258 * 15 13 11 17 17 H 1.48503 * 109.46973 * 210.00170 * 15 13 11 18 18 H 1.48502 * 109.46892 * 329.99703 * 15 13 11 19 19 C 1.53787 * 113.61604 * 185.47729 * 3 2 1 20 20 C 1.53785 * 87.16809 * 140.02498 * 19 3 2 21 21 C 1.53778 * 113.69191 * 283.01580 * 3 2 1 22 22 H 1.09007 * 109.47002 * 64.83161 * 1 2 3 23 23 H 1.08993 * 109.47708 * 184.83089 * 1 2 3 24 24 H 1.08998 * 109.47284 * 304.83781 * 1 2 3 25 25 H 1.00896 * 111.00113 * 236.04394 * 2 1 3 26 26 H 1.08998 * 109.47205 * 84.99444 * 7 6 4 27 27 H 1.08995 * 109.47051 * 204.99837 * 7 6 4 28 28 H 1.09001 * 109.46985 * 324.99913 * 7 6 4 29 29 H 1.09000 * 109.46820 * 60.00439 * 10 8 6 30 30 H 1.09006 * 109.47188 * 179.97438 * 10 8 6 31 31 H 1.08995 * 109.47197 * 299.99742 * 10 8 6 32 32 H 0.97002 * 119.99674 * 179.97438 * 14 13 11 33 33 H 1.08998 * 113.61216 * 254.61305 * 19 3 2 34 34 H 1.08992 * 113.61041 * 25.43482 * 19 3 2 35 35 H 1.08997 * 113.61361 * 89.16357 * 20 19 3 36 36 H 1.09000 * 113.61039 * 220.06229 * 20 19 3 37 37 H 1.08992 * 113.61745 * 334.55686 * 21 3 2 38 38 H 1.09005 * 113.61453 * 105.37698 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4484 2.2083 1.1276 5 8 0.9661 3.2967 0.8962 6 7 1.4949 1.7471 2.3931 7 6 2.1720 0.4815 2.6872 8 6 0.8685 2.5112 3.4747 9 1 0.4188 3.4165 3.0669 10 6 -0.2137 1.6591 4.1408 11 6 1.9123 2.8853 4.4953 12 1 2.9394 2.5836 4.3527 13 6 1.5558 3.6117 5.6116 14 7 2.4666 3.9378 6.5025 15 14 -0.2210 4.1329 5.8586 16 1 -0.9443 3.0814 6.6177 17 1 -0.2617 5.4083 6.6183 18 1 -0.8692 4.3235 4.5362 19 6 3.5258 1.4438 -0.1345 20 6 3.3106 2.6490 -1.0651 21 6 1.9209 2.0619 -1.3720 22 1 -0.3633 0.4371 -0.9302 23 1 -0.3634 -1.0239 0.0865 24 1 -0.3634 0.5870 0.8435 25 1 1.8306 -0.5261 -0.7813 26 1 3.2378 0.6632 2.8249 27 1 1.7562 0.0501 3.5976 28 1 2.0256 -0.2101 1.8575 29 1 0.2364 0.7541 4.5487 30 1 -0.6795 2.2275 4.9459 31 1 -0.9687 1.3886 3.4026 32 1 2.2158 4.4492 7.2877 33 1 4.0344 1.6959 0.7960 34 1 3.9615 0.5787 -0.6341 35 1 3.2751 3.6042 -0.5413 36 1 3.9800 2.6614 -1.9253 37 1 1.9178 1.3665 -2.2112 38 1 1.1330 2.8121 -1.4410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380110700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -18.097579 kcal Electronic energy + Delta-G solvation = -18722.638896 eV Core-core repulsion = 15986.632868 eV Total energy + Delta-G solvation = -2736.006028 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.89688 -38.92638 -37.20886 -35.12650 -34.50763 -32.23809 -27.68294 -27.46319 -27.17822 -26.51059 -25.28643 -23.10848 -21.35618 -19.34387 -18.84781 -17.90399 -17.46842 -17.13391 -16.48995 -15.81339 -15.48006 -15.18324 -14.98404 -14.88114 -14.36492 -14.13829 -13.80806 -13.55519 -13.32859 -13.09718 -13.00442 -12.86453 -12.81039 -12.51857 -12.09325 -11.97884 -11.81415 -11.60956 -11.41599 -11.36799 -10.82893 -10.65295 -9.52738 -9.17053 -8.37793 -6.42258 1.22429 1.31850 1.40853 1.63740 2.24605 2.25780 2.96967 3.07963 3.48686 3.62134 3.70284 3.89355 4.30441 4.42417 4.45987 4.47349 4.58900 4.60721 4.69232 4.70540 4.79561 4.93209 4.96643 4.99331 5.03281 5.08035 5.08348 5.20542 5.32576 5.36742 5.48385 5.71426 5.81373 6.19129 6.49789 6.59059 6.77371 7.18437 7.36150 8.78610 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.007952 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.723405 B = 3520.177843 C = 3709.000335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.657 5.657 3 C 0.074 3.926 4 C 0.525 3.475 5 O -0.601 6.601 6 N -0.579 5.579 7 C 0.071 3.929 8 C 0.229 3.771 9 H 0.026 0.974 10 C -0.151 4.151 11 C -0.526 4.526 12 H 0.040 0.960 13 C 0.021 3.979 14 N -0.939 5.939 15 Si 0.944 3.056 16 H -0.251 1.251 17 H -0.293 1.293 18 H -0.265 1.265 19 C -0.112 4.112 20 C -0.140 4.140 21 C -0.144 4.144 22 H 0.031 0.969 23 H 0.099 0.901 24 H 0.033 0.967 25 H 0.368 0.632 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.134 0.866 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -11.709 -15.555 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.021 4.021 4 C 0.313 3.687 5 O -0.483 6.483 6 N -0.307 5.307 7 C -0.071 4.071 8 C 0.125 3.875 9 H 0.044 0.956 10 C -0.208 4.208 11 C -0.564 4.564 12 H 0.058 0.942 13 C -0.177 4.177 14 N -0.579 5.579 15 Si 0.770 3.230 16 H -0.176 1.176 17 H -0.221 1.221 18 H -0.189 1.189 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.184 4.184 22 H 0.050 0.950 23 H 0.117 0.883 24 H 0.052 0.948 25 H 0.191 0.809 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.392 -11.183 -14.782 18.689 hybrid contribution -0.656 1.263 0.123 1.429 sum -3.047 -9.920 -14.659 17.960 Atomic orbital electron populations 1.22214 0.87281 1.03213 0.99744 1.60182 1.08349 1.10305 1.50257 1.22288 0.97945 0.89137 0.92726 1.20445 0.78173 0.85886 0.84237 1.90606 1.49167 1.23920 1.84566 1.47795 1.53423 1.23369 1.06162 1.22290 0.95268 0.85119 1.04466 1.18981 0.91859 0.91199 0.85466 0.95598 1.22286 0.98102 1.00829 0.99610 1.21348 0.95088 1.34786 1.05183 0.94160 1.25683 1.01645 0.95149 0.95273 1.70009 1.35676 1.40080 1.12116 0.85942 0.80643 0.77634 0.78750 1.17638 1.22061 1.18949 1.23094 0.91701 1.00169 1.00021 1.22734 0.97624 0.97004 1.00479 1.23515 0.98013 1.00670 0.96153 0.95042 0.88296 0.94780 0.80921 0.95088 0.92052 0.84549 0.91141 0.93937 0.92558 0.92216 0.93001 0.84833 0.93407 0.87856 0.85894 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.37 127.69 1.32 1.85 16 2 N -0.66 -13.44 4.07 -494.10 -2.01 -15.45 16 3 C 0.07 2.04 0.38 3.31 0.00 2.04 16 4 C 0.52 21.65 5.08 87.66 0.45 22.10 16 5 O -0.60 -30.11 15.18 -3.03 -0.05 -30.16 16 6 N -0.58 -24.93 2.70 -826.79 -2.24 -27.17 16 7 C 0.07 2.49 9.19 127.77 1.17 3.66 16 8 C 0.23 11.57 2.22 44.25 0.10 11.67 16 9 H 0.03 1.49 5.97 -2.39 -0.01 1.47 16 10 C -0.15 -6.48 8.66 71.98 0.62 -5.86 16 11 C -0.53 -30.95 8.95 25.60 0.23 -30.72 16 12 H 0.04 2.60 7.89 -2.91 -0.02 2.58 16 13 C 0.02 1.26 5.45 84.66 0.46 1.72 16 14 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 15 Si 0.94 46.46 24.37 68.60 1.67 48.13 16 16 H -0.25 -11.26 6.87 99.48 0.68 -10.58 16 17 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 18 H -0.26 -12.95 6.53 99.48 0.65 -12.30 16 19 C -0.11 -2.68 7.15 31.12 0.22 -2.46 16 20 C -0.14 -3.53 7.78 31.18 0.24 -3.28 16 21 C -0.14 -3.50 6.91 31.18 0.22 -3.28 16 22 H 0.03 0.63 8.01 -2.38 -0.02 0.62 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.03 0.98 6.91 -2.39 -0.02 0.97 16 25 H 0.37 4.80 8.74 -89.70 -0.78 4.01 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 2.17 6.44 -2.39 -0.02 2.16 16 28 H 0.14 3.82 4.90 -2.39 -0.01 3.80 16 29 H 0.07 2.82 6.66 -2.39 -0.02 2.81 16 30 H 0.04 1.88 3.27 -2.38 -0.01 1.87 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.05 1.54 8.09 -2.39 -0.02 1.52 16 34 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.12 1.96 8.11 -2.39 -0.02 1.94 16 38 H 0.05 1.59 7.41 -2.38 -0.02 1.58 16 Total: -1.00 -74.86 292.49 2.90 -71.96 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.19 Total: 14.13 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.04 Total: -2.56 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -3.95 Total: -101.51 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -74.86 2.90 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380110700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.863 kcal (2) G-P(sol) polarization free energy of solvation -74.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds