Wall clock time and date at job start Mon Mar 30 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46746 * 2 1 4 4 C 1.50701 * 109.46941 * 240.00535 * 2 1 3 5 5 H 1.08001 * 119.99724 * 240.00070 * 4 2 1 6 6 C 1.37873 * 120.00139 * 59.99516 * 4 2 1 7 7 N 1.31517 * 120.00189 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99860 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47663 * 59.99945 * 8 6 4 10 10 H 1.48500 * 109.47236 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47080 * 299.99653 * 8 6 4 12 12 N 1.46899 * 109.47294 * 120.00493 * 2 1 3 13 13 C 1.46894 * 110.99829 * 206.02125 * 12 2 1 14 14 H 1.09003 * 109.47239 * 327.90240 * 13 12 2 15 15 C 1.52991 * 109.47777 * 87.90368 * 13 12 2 16 16 C 1.52999 * 109.47531 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46749 * 299.99667 * 16 15 13 18 18 C 1.52995 * 109.46937 * 60.00432 * 17 16 15 19 19 C 1.52999 * 109.47048 * 299.99385 * 18 17 16 20 20 H 1.08999 * 109.47705 * 180.02562 * 19 18 17 21 21 C 1.50695 * 109.47392 * 300.00477 * 19 18 17 22 22 N 1.34780 * 119.99949 * 299.99530 * 21 19 18 23 23 O 1.21284 * 120.00527 * 119.99847 * 21 19 18 24 24 H 1.09005 * 109.46960 * 299.20694 * 1 2 3 25 25 H 1.08997 * 109.47303 * 59.20635 * 1 2 3 26 26 H 1.09002 * 109.46810 * 179.21026 * 1 2 3 27 27 H 0.96995 * 120.00051 * 180.02562 * 7 6 4 28 28 H 1.00892 * 111.00203 * 82.05995 * 12 2 1 29 29 H 1.08996 * 109.47457 * 59.99780 * 15 13 12 30 30 H 1.09006 * 109.47248 * 300.00299 * 15 13 12 31 31 H 1.09007 * 109.47511 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.47515 * 59.99854 * 16 15 13 33 33 H 1.08996 * 109.47081 * 299.99697 * 17 16 15 34 34 H 1.09007 * 109.46796 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47201 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47481 * 59.99418 * 18 17 16 37 37 H 0.97001 * 119.99480 * 0.02562 * 22 21 19 38 38 H 0.97000 * 120.00084 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5201 -4.0079 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 7 2.0198 -0.6926 1.1994 13 6 3.3571 -0.2143 1.5742 14 1 3.9072 0.0674 0.6763 15 6 3.2250 1.0013 2.4937 16 6 4.6180 1.4998 2.8836 17 6 5.3717 0.3869 3.6147 18 6 5.5039 -0.8287 2.6951 19 6 4.1110 -1.3272 2.3053 20 1 4.2051 -2.1935 1.6505 21 6 3.3511 -1.7168 3.5469 22 7 3.8292 -2.6848 4.3536 23 8 2.3092 -1.1594 3.8203 24 1 -0.3633 0.5015 0.8971 25 1 -0.3634 0.5261 -0.8827 26 1 -0.3633 -1.0276 -0.0142 27 1 0.7088 1.1615 -3.4843 28 1 2.0177 -1.6926 1.0656 29 1 2.6750 0.7197 3.3916 30 1 2.6883 1.7943 1.9728 31 1 4.5238 2.3656 3.5391 32 1 5.1676 1.7816 1.9855 33 1 4.8221 0.1052 4.5128 34 1 6.3643 0.7419 3.8921 35 1 6.0405 -1.6217 3.2161 36 1 6.0535 -0.5469 1.7970 37 1 4.6627 -3.1304 4.1351 38 1 3.3403 -2.9354 5.1531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380264868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:36 Heat of formation + Delta-G solvation = -79.919191 kcal Electronic energy + Delta-G solvation = -18456.369243 eV Core-core repulsion = 15717.682429 eV Total energy + Delta-G solvation = -2738.686814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38182 -38.30335 -36.81107 -34.64800 -34.09471 -31.80909 -31.27134 -28.25181 -27.14593 -24.57900 -22.97720 -22.11273 -21.65788 -20.12116 -18.60601 -17.85900 -17.22518 -16.84911 -16.62489 -15.96860 -15.29418 -15.23685 -14.68102 -14.51122 -14.24166 -13.95075 -13.58818 -13.19935 -13.00119 -12.92023 -12.81691 -12.74382 -12.24343 -12.09393 -12.00054 -11.94308 -11.62832 -11.17772 -11.04048 -10.91631 -10.50354 -10.45128 -10.24719 -8.90166 -8.03922 -6.28285 1.39130 1.40790 1.48445 1.93062 2.40404 2.78759 3.14974 3.60329 3.72293 3.93754 4.15318 4.24642 4.42383 4.51355 4.55375 4.66789 4.68449 4.85050 4.95049 4.99478 5.13038 5.14445 5.26838 5.27808 5.31629 5.35997 5.46721 5.49926 5.64976 5.73014 6.04170 6.15803 6.18396 6.44565 6.69737 6.89232 7.06082 7.43983 7.64744 8.92912 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028254 B = 0.007084 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.769149 B = 3951.664938 C = 4012.685428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.216 3.784 3 H -0.004 1.004 4 C -0.555 4.555 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.671 5.671 13 C 0.115 3.885 14 H 0.024 0.976 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.109 4.109 20 H 0.100 0.900 21 C 0.522 3.478 22 N -0.842 5.842 23 O -0.554 6.554 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.262 0.738 28 H 0.321 0.679 29 H 0.076 0.924 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.413 0.587 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.493 -6.200 12.204 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.595 4.595 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.300 5.300 13 C 0.004 3.996 14 H 0.042 0.958 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.131 4.131 20 H 0.118 0.882 21 C 0.306 3.694 22 N -0.408 5.408 23 O -0.431 6.431 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.428 -5.189 12.523 17.729 hybrid contribution 0.390 -0.770 -1.704 1.910 sum 11.818 -5.959 10.819 17.094 Atomic orbital electron populations 1.21518 0.98379 0.98523 0.98680 1.18917 0.92067 0.92488 0.85847 0.98645 1.22100 1.31809 1.12762 0.92788 0.92742 1.25774 0.95050 0.95572 1.02038 1.70031 1.37356 1.24075 1.24134 0.85640 0.78799 0.78740 0.78619 1.19611 1.21021 1.19488 1.60803 1.24131 1.08162 1.36892 1.21119 0.88861 0.94562 0.95060 0.95770 1.21699 0.97435 0.95978 1.00104 1.21555 0.95019 0.98720 1.00246 1.21533 1.00851 0.94967 0.97731 1.21561 0.92812 0.98793 1.00883 1.21591 0.97083 0.99294 0.95154 0.88197 1.20522 0.84803 0.79189 0.84855 1.43699 1.28959 1.40015 1.28098 1.90739 1.24730 1.53799 1.73841 0.96440 0.92414 0.95777 0.92881 0.86223 0.90577 0.96064 0.91587 0.92452 0.92700 0.89267 0.87952 0.90532 0.75594 0.76511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.12 9.29 71.98 0.67 -5.46 16 2 C 0.22 11.73 2.39 44.17 0.11 11.83 16 3 H 0.00 -0.27 7.33 -2.39 -0.02 -0.29 16 4 C -0.56 -31.07 8.33 25.60 0.21 -30.86 16 5 H 0.05 2.93 7.73 -2.91 -0.02 2.91 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -54.44 11.33 21.45 0.24 -54.20 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.67 -31.14 4.88 -473.31 -2.31 -33.45 16 13 C 0.11 4.49 1.88 44.92 0.08 4.58 16 14 H 0.02 1.07 7.65 -2.39 -0.02 1.05 16 15 C -0.11 -4.38 5.15 30.59 0.16 -4.22 16 16 C -0.12 -3.34 5.92 30.60 0.18 -3.16 16 17 C -0.11 -2.43 5.70 30.59 0.17 -2.26 16 18 C -0.10 -2.05 5.36 30.59 0.16 -1.88 16 19 C -0.11 -3.06 2.37 -11.54 -0.03 -3.09 16 20 H 0.10 2.61 8.12 -2.39 -0.02 2.59 16 21 C 0.52 14.76 5.70 87.66 0.50 15.26 16 22 N -0.84 -14.39 8.77 -173.53 -1.52 -15.91 16 23 O -0.55 -21.53 13.72 -3.04 -0.04 -21.57 16 24 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.06 3.36 6.09 -2.39 -0.01 3.35 16 26 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.32 14.61 7.93 -89.70 -0.71 13.90 16 29 H 0.08 3.15 5.51 -2.39 -0.01 3.14 16 30 H 0.02 0.92 7.66 -2.38 -0.02 0.90 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.25 7.22 -2.39 -0.02 1.23 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.26 7.56 -2.39 -0.02 1.24 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 4.09 8.25 -92.71 -0.76 3.32 16 38 H 0.40 6.14 8.93 -92.71 -0.83 5.31 16 Total: -1.00 -70.74 294.08 -0.16 -70.90 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -1.23 Total: 26.37 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 2.67 Total: -17.94 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.59 Total: -103.56 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.74 -0.16 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380264868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.019 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds