Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 15 15 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 16 16 C 1.52999 * 109.47168 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47320 * 60.00057 * 16 15 13 18 18 C 1.52999 * 109.47286 * 300.00255 * 17 16 15 19 19 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 20 20 H 1.09003 * 109.47283 * 299.99526 * 19 13 12 21 21 C 1.50695 * 109.47548 * 59.99869 * 19 13 12 22 22 N 1.34769 * 120.00416 * 179.97438 * 21 19 13 23 23 O 1.21285 * 119.99720 * 0.02562 * 21 19 13 24 24 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 25 25 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00023 * 38.95266 * 12 2 1 29 29 H 1.08993 * 109.47547 * 300.00371 * 15 13 12 30 30 H 1.08999 * 109.46672 * 60.00157 * 15 13 12 31 31 H 1.09002 * 109.47247 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.46966 * 300.00320 * 16 15 13 33 33 H 1.09006 * 109.46534 * 59.99923 * 17 16 15 34 34 H 1.08998 * 109.47458 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47490 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47125 * 299.99813 * 18 17 16 37 37 H 0.97008 * 120.00304 * 0.02562 * 22 21 19 38 38 H 0.97002 * 120.00521 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.2577 0.9327 2.2907 15 6 3.4112 0.9807 2.3224 16 6 3.4769 1.9332 3.5179 17 6 3.3718 1.1303 4.8160 18 6 2.0432 0.3720 4.8406 19 6 1.9772 -0.5801 3.6452 20 1 1.0306 -1.1203 3.6628 21 6 3.1176 -1.5622 3.7228 22 7 3.2303 -2.3813 4.7870 23 8 3.9345 -1.6148 2.8279 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 0.6955 1.1524 -3.4842 28 1 1.4497 -1.4980 1.4098 29 1 4.2360 0.2704 2.3784 30 1 3.4862 1.5523 1.3973 31 1 4.4233 2.4737 3.5002 32 1 2.6520 2.6435 3.4622 33 1 4.1967 0.4199 4.8716 34 1 3.4181 1.8089 5.6678 35 1 1.9684 -0.2004 5.7652 36 1 1.2183 1.0823 4.7849 37 1 2.5771 -2.3390 5.5030 38 1 3.9645 -3.0132 4.8372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380264871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -52.312209 kcal Electronic energy + Delta-G solvation = -18402.314745 eV Core-core repulsion = 15664.825059 eV Total energy + Delta-G solvation = -2737.489686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17773 -36.98445 -35.14997 -33.45574 -32.28761 -30.56332 -29.57224 -26.48738 -25.00848 -23.44409 -21.71792 -20.98365 -19.67814 -19.03087 -17.02308 -16.11199 -16.04239 -15.49792 -14.63501 -14.59738 -14.01448 -13.65254 -13.35106 -13.21996 -12.60892 -12.53360 -11.88232 -11.69156 -11.62380 -11.43460 -11.04526 -10.84850 -10.68223 -10.61054 -10.30747 -10.18912 -10.01330 -9.84149 -9.50275 -9.36205 -9.01419 -8.83470 -8.23784 -6.94882 -5.86639 -3.88187 3.08406 3.42896 3.45498 3.50662 3.78637 4.54058 4.83238 4.84787 4.93927 5.23809 5.44524 5.46091 5.51269 5.62787 5.66490 5.82794 5.82967 5.95213 6.11095 6.22806 6.34206 6.46890 6.58057 6.78393 6.87179 6.91393 6.98783 7.22573 7.25332 7.53715 7.59635 7.84968 8.04778 8.43908 8.68771 8.73236 8.80593 9.20298 9.76582 11.20502 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.006723 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.731062 B = 4164.010109 C = 4423.073098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.487 4.487 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.278 1.278 12 N -0.664 5.664 13 C 0.112 3.888 14 H 0.037 0.963 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.106 4.106 19 C -0.112 4.112 20 H 0.088 0.912 21 C 0.518 3.482 22 N -0.870 5.870 23 O -0.494 6.494 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.003 0.997 27 H 0.258 0.742 28 H 0.318 0.682 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.393 0.607 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -1.320 17.436 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.526 4.526 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.542 5.542 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.293 5.293 13 C 0.001 3.999 14 H 0.055 0.945 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.134 4.134 20 H 0.106 0.894 21 C 0.302 3.698 22 N -0.435 5.435 23 O -0.365 6.365 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.947 -1.000 16.390 16.535 hybrid contribution -0.898 -0.597 -0.234 1.104 sum 1.049 -1.597 16.155 16.268 Atomic orbital electron populations 1.22462 1.01146 0.98968 1.00324 1.19192 0.89097 0.94481 0.86828 0.94825 1.21170 1.29504 1.12311 0.89627 0.92014 1.24938 0.95495 0.95302 0.98931 1.69875 1.37482 1.23637 1.23191 0.86592 0.79233 0.79564 0.82160 1.20505 1.21584 1.20330 1.60761 1.57664 1.08071 1.02804 1.21174 0.96876 0.93556 0.88263 0.94546 1.21777 0.99272 0.98025 0.96638 1.21581 1.01138 0.98131 0.94977 1.21552 0.97037 0.99027 0.98045 1.21491 0.98905 0.98071 0.96011 1.21618 0.97433 0.96139 0.98182 0.89408 1.20468 0.87003 0.81039 0.81273 1.44008 1.32961 1.42358 1.24161 1.90789 1.41792 1.67469 1.36488 0.89295 0.95555 0.97838 0.93217 0.86538 0.88959 0.91903 0.92413 0.92564 0.92182 0.92310 0.92019 0.90972 0.77953 0.77535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.92 37.16 0.33 -3.86 16 2 C 0.21 5.53 2.39 -68.87 -0.16 5.37 16 3 H 0.03 0.97 7.11 -51.93 -0.37 0.60 16 4 C -0.49 -14.18 8.84 -34.44 -0.30 -14.49 16 5 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.63 11.30 55.43 0.63 -26.00 16 8 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.66 -14.90 4.84 -100.95 -0.49 -15.38 16 13 C 0.11 2.07 1.90 -67.71 -0.13 1.94 16 14 H 0.04 0.70 7.11 -51.93 -0.37 0.33 16 15 C -0.12 -2.22 5.11 -26.73 -0.14 -2.36 16 16 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 17 C -0.12 -1.41 5.70 -26.73 -0.15 -1.56 16 18 C -0.11 -1.16 5.35 -26.75 -0.14 -1.30 16 19 C -0.11 -1.56 2.39 -91.80 -0.22 -1.78 16 20 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 21 C 0.52 7.71 5.73 -10.99 -0.06 7.64 16 22 N -0.87 -8.68 8.76 31.22 0.27 -8.41 16 23 O -0.49 -9.84 13.71 5.55 0.08 -9.77 16 24 H 0.09 2.43 6.05 -51.93 -0.31 2.12 16 25 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.32 6.88 8.08 -39.29 -0.32 6.57 16 29 H 0.09 1.90 5.51 -51.93 -0.29 1.62 16 30 H 0.06 1.33 7.43 -51.93 -0.39 0.94 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.77 7.22 -51.93 -0.37 0.39 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.39 2.67 8.24 -40.82 -0.34 2.34 16 38 H 0.39 3.60 8.93 -40.82 -0.36 3.24 16 LS Contribution 292.65 15.07 4.41 4.41 Total: -1.00 -32.62 292.65 -7.33 -39.95 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.98 Total: 8.56 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.23 Total: -10.83 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.41 Total: -49.80 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.62 -7.33 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380264871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.361 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds