Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 15 15 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 16 16 C 1.52999 * 109.47168 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47320 * 60.00057 * 16 15 13 18 18 C 1.52999 * 109.47286 * 300.00255 * 17 16 15 19 19 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 20 20 H 1.09003 * 109.47283 * 299.99526 * 19 13 12 21 21 C 1.50695 * 109.47548 * 59.99869 * 19 13 12 22 22 N 1.34769 * 120.00416 * 179.97438 * 21 19 13 23 23 O 1.21285 * 119.99720 * 0.02562 * 21 19 13 24 24 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 25 25 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00023 * 38.95266 * 12 2 1 29 29 H 1.08993 * 109.47547 * 300.00371 * 15 13 12 30 30 H 1.08999 * 109.46672 * 60.00157 * 15 13 12 31 31 H 1.09002 * 109.47247 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.46966 * 300.00320 * 16 15 13 33 33 H 1.09006 * 109.46534 * 59.99923 * 17 16 15 34 34 H 1.08998 * 109.47458 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47490 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47125 * 299.99813 * 18 17 16 37 37 H 0.97008 * 120.00304 * 0.02562 * 22 21 19 38 38 H 0.97002 * 120.00521 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.2577 0.9327 2.2907 15 6 3.4112 0.9807 2.3224 16 6 3.4769 1.9332 3.5179 17 6 3.3718 1.1303 4.8160 18 6 2.0432 0.3720 4.8406 19 6 1.9772 -0.5801 3.6452 20 1 1.0306 -1.1203 3.6628 21 6 3.1176 -1.5622 3.7228 22 7 3.2303 -2.3813 4.7870 23 8 3.9345 -1.6148 2.8279 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 0.6955 1.1524 -3.4842 28 1 1.4497 -1.4980 1.4098 29 1 4.2360 0.2704 2.3784 30 1 3.4862 1.5523 1.3973 31 1 4.4233 2.4737 3.5002 32 1 2.6520 2.6435 3.4622 33 1 4.1967 0.4199 4.8716 34 1 3.4181 1.8089 5.6678 35 1 1.9684 -0.2004 5.7652 36 1 1.2183 1.0823 4.7849 37 1 2.5771 -2.3390 5.5030 38 1 3.9645 -3.0132 4.8372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380264871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -77.661396 kcal Electronic energy + Delta-G solvation = -18403.413968 eV Core-core repulsion = 15664.825059 eV Total energy + Delta-G solvation = -2738.588909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39684 -38.35447 -36.83495 -34.65723 -34.17406 -31.77111 -31.18617 -28.15528 -27.21343 -24.57952 -23.24680 -22.13831 -21.52688 -20.19554 -18.51584 -17.73819 -17.23892 -16.81349 -16.62406 -15.97840 -15.37558 -15.13573 -14.65198 -14.51166 -14.37993 -14.10285 -13.43951 -13.19937 -13.05368 -12.95347 -12.83292 -12.64122 -12.45241 -12.16560 -11.98277 -11.92710 -11.63490 -11.24238 -10.93146 -10.91404 -10.48024 -10.44295 -10.24604 -8.74210 -8.08597 -6.18981 1.39363 1.42197 1.50091 1.95381 2.43759 2.78834 3.18413 3.58609 3.70372 3.92881 4.15243 4.23744 4.40336 4.49943 4.51544 4.61790 4.64884 4.76620 4.86918 4.93380 4.96642 5.11270 5.13247 5.25742 5.30942 5.35100 5.46808 5.49562 5.67376 5.72300 5.89207 6.16303 6.33650 6.68670 6.77056 6.93724 7.01843 7.50991 7.67321 8.96415 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.006723 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.731062 B = 4164.010109 C = 4423.073098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.219 3.781 3 H -0.003 1.003 4 C -0.514 4.514 5 H 0.045 0.955 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.673 5.673 13 C 0.109 3.891 14 H 0.030 0.970 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.107 4.107 20 H 0.108 0.892 21 C 0.517 3.483 22 N -0.843 5.843 23 O -0.555 6.555 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.322 0.678 29 H 0.070 0.930 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -1.971 19.843 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.015 0.985 4 C -0.552 4.552 5 H 0.063 0.937 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.302 5.302 13 C -0.001 4.001 14 H 0.048 0.952 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.129 4.129 20 H 0.126 0.874 21 C 0.302 3.698 22 N -0.409 5.409 23 O -0.432 6.432 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.245 0.755 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.195 -1.671 18.871 18.982 hybrid contribution -0.641 -0.386 -0.939 1.201 sum 0.553 -2.057 17.932 18.058 Atomic orbital electron populations 1.22233 0.99906 0.99119 1.00124 1.18901 0.89866 0.92384 0.87792 0.98515 1.21442 1.29973 1.12300 0.91518 0.93691 1.25687 0.95543 0.95982 1.01707 1.69996 1.37907 1.24465 1.23924 0.85620 0.78428 0.78831 0.78752 1.19606 1.20453 1.20464 1.60600 1.57452 1.08786 1.03340 1.21233 0.96156 0.93438 0.89300 0.95228 1.21698 0.98920 0.97981 0.96828 1.21549 1.01697 0.97592 0.94571 1.21543 0.97402 0.99131 0.97160 1.21560 0.98565 0.97886 0.95902 1.21577 0.98015 0.96398 0.96882 0.87393 1.20625 0.86405 0.81368 0.81410 1.43710 1.33261 1.40768 1.23137 1.90785 1.43989 1.69379 1.39042 0.92031 0.95043 0.95345 0.93017 0.86109 0.91131 0.96353 0.92036 0.91898 0.93130 0.89166 0.87887 0.89855 0.75534 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.72 8.92 71.98 0.64 -7.08 16 2 C 0.22 11.91 2.39 44.17 0.11 12.02 16 3 H 0.00 -0.19 7.11 -2.39 -0.02 -0.20 16 4 C -0.51 -30.96 8.84 25.60 0.23 -30.74 16 5 H 0.04 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -55.67 11.30 21.45 0.24 -55.43 16 8 Si 0.96 46.86 29.54 68.60 2.03 48.88 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 N -0.67 -31.07 4.84 -473.31 -2.29 -33.36 16 13 C 0.11 4.06 1.90 44.92 0.09 4.14 16 14 H 0.03 1.14 7.11 -2.39 -0.02 1.12 16 15 C -0.12 -4.51 5.11 30.59 0.16 -4.36 16 16 C -0.12 -3.23 5.92 30.59 0.18 -3.05 16 17 C -0.11 -2.36 5.70 30.59 0.17 -2.18 16 18 C -0.10 -1.78 5.35 30.58 0.16 -1.61 16 19 C -0.11 -2.75 2.39 -11.56 -0.03 -2.78 16 20 H 0.11 2.38 8.12 -2.39 -0.02 2.36 16 21 C 0.52 14.58 5.73 87.66 0.50 15.08 16 22 N -0.84 -14.25 8.76 -173.54 -1.52 -15.77 16 23 O -0.56 -22.47 13.71 -3.05 -0.04 -22.51 16 24 H 0.06 3.43 6.05 -2.39 -0.01 3.41 16 25 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.03 1.23 7.43 -2.39 -0.02 1.21 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.32 14.07 8.08 -89.70 -0.72 13.34 16 29 H 0.07 3.07 5.51 -2.39 -0.01 3.06 16 30 H 0.02 0.82 7.43 -2.39 -0.02 0.80 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.16 7.22 -2.38 -0.02 1.14 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.04 7.56 -2.39 -0.02 1.02 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 3.74 8.24 -92.70 -0.76 2.97 16 38 H 0.40 6.30 8.93 -92.71 -0.83 5.47 16 Total: -1.00 -74.99 292.65 -0.16 -75.15 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.24 Total: 22.64 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 2.66 Total: -19.60 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -3.57 Total: -104.56 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.04 Total: -22.51 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.99 -0.16 -75.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380264871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.507 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds