Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47146 * 2 1 4 4 C 1.50704 * 109.47004 * 240.00087 * 2 1 3 5 5 H 1.08007 * 119.99541 * 245.37825 * 4 2 1 6 6 C 1.37878 * 120.00053 * 65.37792 * 4 2 1 7 7 N 1.31512 * 119.99687 * 185.16885 * 6 4 2 8 8 Si 1.86798 * 119.99820 * 5.16394 * 6 4 2 9 9 H 1.48504 * 109.46918 * 270.00060 * 8 6 4 10 10 H 1.48497 * 109.47122 * 150.00292 * 8 6 4 11 11 H 1.48498 * 109.47204 * 30.00115 * 8 6 4 12 12 N 1.46904 * 109.47185 * 119.99965 * 2 1 3 13 13 C 1.46891 * 111.00059 * 274.99952 * 12 2 1 14 14 H 1.09004 * 109.47295 * 34.99874 * 13 12 2 15 15 C 1.52993 * 109.47399 * 274.99746 * 13 12 2 16 16 C 1.53001 * 109.47616 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46920 * 59.99914 * 16 15 13 18 18 C 1.53003 * 109.47082 * 300.00307 * 17 16 15 19 19 C 1.52992 * 109.47108 * 59.99877 * 18 17 16 20 20 H 1.09004 * 109.47192 * 60.00009 * 19 18 17 21 21 C 1.50701 * 109.47214 * 179.97438 * 19 18 17 22 22 N 1.34777 * 120.00314 * 300.00455 * 21 19 18 23 23 O 1.21280 * 120.00031 * 119.99827 * 21 19 18 24 24 H 1.09004 * 109.47061 * 55.02441 * 1 2 3 25 25 H 1.08997 * 109.47341 * 175.02559 * 1 2 3 26 26 H 1.08997 * 109.46845 * 295.02755 * 1 2 3 27 27 H 0.96998 * 120.00228 * 354.98494 * 7 6 4 28 28 H 1.00899 * 111.00168 * 151.04271 * 12 2 1 29 29 H 1.08997 * 109.47306 * 300.00057 * 15 13 12 30 30 H 1.09005 * 109.47022 * 59.99972 * 15 13 12 31 31 H 1.08997 * 109.47313 * 179.97438 * 16 15 13 32 32 H 1.09004 * 109.47135 * 300.00162 * 16 15 13 33 33 H 1.08997 * 109.47067 * 60.00579 * 17 16 15 34 34 H 1.08999 * 109.46757 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.46609 * 179.97438 * 18 17 16 36 36 H 1.09004 * 109.47087 * 299.99822 * 18 17 16 37 37 H 0.97007 * 119.99894 * 0.02562 * 22 21 19 38 38 H 0.97000 * 120.00450 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5798 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1413 -0.8473 -3.5571 8 14 0.9743 1.4929 -2.6418 9 1 -0.4989 1.3180 -2.7073 10 1 1.4493 2.1587 -3.8813 11 1 1.3216 2.3304 -1.4658 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3468 14 1 1.2577 0.9329 2.2907 15 6 3.4111 0.9808 2.3224 16 6 3.4769 1.9334 3.5178 17 6 3.3717 1.1306 4.8161 18 6 2.0430 0.3723 4.8405 19 6 1.9773 -0.5802 3.6451 20 1 2.8022 -1.2906 3.7008 21 6 0.6689 -1.3275 3.6695 22 7 0.3574 -2.1067 4.7242 23 8 -0.1039 -1.2278 2.7401 24 1 -0.3633 0.5891 -0.8421 25 1 -0.3634 -1.0237 -0.0891 26 1 -0.3633 0.4348 0.9312 27 1 2.6311 -1.6803 -3.4736 28 1 2.9173 -1.1206 1.0288 29 1 4.2360 0.2705 2.3786 30 1 3.4863 1.5524 1.3973 31 1 4.4236 2.4732 3.5006 32 1 2.6520 2.6438 3.4621 33 1 4.1965 0.4203 4.8718 34 1 3.4180 1.8093 5.6677 35 1 1.9683 -0.1999 5.7652 36 1 1.2181 1.0827 4.7848 37 1 0.9753 -2.1862 5.4678 38 1 -0.4850 -2.5874 4.7401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380264876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -87.633293 kcal Electronic energy + Delta-G solvation = -18413.862942 eV Core-core repulsion = 15674.841619 eV Total energy + Delta-G solvation = -2739.021323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05739 -38.75830 -36.96428 -34.63679 -34.19857 -31.90102 -31.65057 -28.56693 -26.70367 -24.49982 -23.22028 -21.44601 -21.32463 -20.67992 -19.60309 -18.27342 -17.32210 -16.70871 -16.40664 -15.68178 -15.38092 -15.21181 -14.91658 -14.67776 -14.38541 -14.17780 -13.61720 -13.51216 -13.45607 -13.08156 -12.70388 -12.39231 -12.17117 -12.06768 -11.91582 -11.64089 -11.57961 -11.41132 -11.08120 -10.81501 -10.66284 -10.49019 -10.37449 -8.96649 -8.70990 -6.40429 1.38532 1.46982 1.65475 1.99239 2.42885 2.81573 3.06641 3.44520 3.76945 3.87924 4.12016 4.23787 4.32587 4.46056 4.48282 4.52234 4.59681 4.65428 4.83665 4.88854 4.96459 5.02723 5.09479 5.16723 5.19082 5.24568 5.32165 5.39641 5.53324 5.65916 5.80240 5.99278 6.14139 6.33793 6.69988 6.75957 6.89000 7.38397 7.68632 8.63632 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027235 B = 0.007884 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.831683 B = 3550.777163 C = 4073.783441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.195 3.805 3 H -0.005 1.005 4 C -0.591 4.591 5 H 0.024 0.976 6 C -0.024 4.024 7 N -0.945 5.945 8 Si 1.093 2.907 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.257 1.257 12 N -0.669 5.669 13 C 0.104 3.896 14 H 0.053 0.947 15 C -0.145 4.145 16 C -0.115 4.115 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.088 4.088 20 H 0.104 0.896 21 C 0.512 3.488 22 N -0.846 5.846 23 O -0.561 6.561 24 H 0.029 0.971 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.251 0.749 28 H 0.325 0.675 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 4.229 23.456 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 H 0.012 0.988 4 C -0.630 4.630 5 H 0.042 0.958 6 C -0.221 4.221 7 N -0.583 5.583 8 Si 0.916 3.084 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.182 1.182 12 N -0.298 5.298 13 C -0.006 4.006 14 H 0.071 0.929 15 C -0.185 4.185 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.141 4.141 19 C -0.111 4.111 20 H 0.122 0.878 21 C 0.297 3.703 22 N -0.412 5.412 23 O -0.437 6.437 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.367 5.222 21.839 22.458 hybrid contribution 1.327 -1.494 0.379 2.034 sum 1.694 3.728 22.218 22.592 Atomic orbital electron populations 1.21726 0.97847 0.99283 0.97944 1.19270 0.92217 0.91939 0.88006 0.98772 1.22434 1.38237 1.08777 0.93523 0.95812 1.27101 0.96747 1.06439 0.91813 1.70927 1.39055 1.16984 1.31294 0.83390 0.76480 0.72175 0.76336 1.19553 1.21251 1.18180 1.60477 1.31272 1.33192 1.04833 1.21382 0.96168 0.92759 0.90338 0.92886 1.22251 0.97851 0.99426 0.98936 1.21516 1.02153 0.97482 0.94135 1.21519 0.96935 0.99252 0.97039 1.21550 0.98837 0.97690 0.95991 1.21324 0.95307 0.98142 0.96276 0.87753 1.20878 0.88637 0.79311 0.81511 1.43732 1.24958 1.50399 1.22073 1.90801 1.52268 1.64174 1.36476 0.95276 0.95426 0.93715 0.93967 0.85797 0.91348 0.94310 0.90854 0.92532 0.90698 0.89467 0.88305 0.92381 0.75605 0.76912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 8.22 71.98 0.59 -5.02 16 2 C 0.20 10.08 1.99 44.17 0.09 10.17 16 3 H -0.01 -0.27 5.62 -2.39 -0.01 -0.28 16 4 C -0.59 -35.85 8.92 25.60 0.23 -35.62 16 5 H 0.02 1.56 7.90 -2.91 -0.02 1.54 16 6 C -0.02 -1.47 5.43 84.66 0.46 -1.01 16 7 N -0.95 -62.17 13.70 21.45 0.29 -61.88 16 8 Si 1.09 54.51 25.29 68.60 1.73 56.25 16 9 H -0.27 -12.80 6.81 99.48 0.68 -12.13 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.26 -11.72 6.36 99.48 0.63 -11.08 16 12 N -0.67 -29.46 4.85 -473.32 -2.29 -31.76 16 13 C 0.10 3.54 1.26 44.92 0.06 3.60 16 14 H 0.05 2.04 7.06 -2.39 -0.02 2.02 16 15 C -0.15 -4.23 5.16 30.59 0.16 -4.07 16 16 C -0.11 -2.38 5.92 30.60 0.18 -2.20 16 17 C -0.11 -1.62 5.92 30.60 0.18 -1.44 16 18 C -0.10 -1.69 5.10 30.59 0.16 -1.54 16 19 C -0.09 -2.20 2.24 -11.54 -0.03 -2.23 16 20 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 21 C 0.51 14.93 7.26 87.66 0.64 15.56 16 22 N -0.85 -15.34 8.77 -173.53 -1.52 -16.86 16 23 O -0.56 -23.21 14.40 -3.03 -0.04 -23.26 16 24 H 0.03 1.44 4.40 -2.39 -0.01 1.43 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 2.13 6.55 -2.39 -0.02 2.11 16 27 H 0.25 16.71 8.72 -92.71 -0.81 15.90 16 28 H 0.32 14.42 8.00 -89.69 -0.72 13.71 16 29 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 30 H 0.04 1.34 7.43 -2.38 -0.02 1.32 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.98 7.56 -2.39 -0.02 0.96 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.41 4.14 8.25 -92.70 -0.76 3.37 16 38 H 0.40 6.88 8.93 -92.71 -0.83 6.06 16 Total: -1.00 -77.95 290.23 -0.49 -78.45 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -1.37 Total: 22.86 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 2.71 Total: -23.80 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.52 Total: -110.50 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.26 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 1.73 Total: 56.25 kcal Total: -77.95 -0.49 -78.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380264876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.187 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds