Wall clock time and date at job start Mon Mar 30 2020 04:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47048 * 2 1 4 4 C 1.46500 * 120.00039 * 275.82809 * 3 2 1 5 5 C 1.50697 * 109.47059 * 264.49709 * 4 3 2 6 6 H 1.07997 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99707 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99600 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46951 * 120.00226 * 9 7 5 12 12 H 1.48499 * 109.47004 * 239.99559 * 9 7 5 13 13 C 1.34773 * 119.99756 * 95.82501 * 3 2 1 14 14 O 1.21283 * 120.00040 * 4.51567 * 13 3 2 15 15 C 1.50706 * 120.00225 * 184.51121 * 13 3 2 16 16 H 1.09003 * 109.46834 * 318.30133 * 15 13 3 17 17 C 1.53001 * 109.46770 * 78.29330 * 15 13 3 18 18 N 1.46897 * 109.47431 * 198.29501 * 15 13 3 19 19 C 1.46897 * 110.99906 * 154.99968 * 18 15 13 20 20 C 1.53000 * 117.51627 * 136.28343 * 19 18 15 21 21 C 1.52997 * 60.00058 * 107.47853 * 20 19 18 22 22 H 1.09010 * 109.46776 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46977 * 299.99572 * 1 2 3 24 24 H 1.09002 * 109.47600 * 59.99944 * 1 2 3 25 25 H 1.09006 * 109.47098 * 240.00402 * 2 1 3 26 26 H 1.08991 * 109.47867 * 120.00406 * 2 1 3 27 27 H 1.08998 * 109.47518 * 24.50446 * 4 3 2 28 28 H 1.09009 * 109.46755 * 144.49796 * 4 3 2 29 29 H 0.97000 * 119.99776 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47304 * 57.95083 * 17 15 13 31 31 H 1.09005 * 109.47058 * 177.94904 * 17 15 13 32 32 H 1.09004 * 109.47622 * 297.95391 * 17 15 13 33 33 H 1.00897 * 111.00027 * 31.04438 * 18 15 13 34 34 H 1.09000 * 115.55071 * 350.58742 * 19 18 15 35 35 H 1.09006 * 117.50095 * 214.97069 * 20 19 18 36 36 H 1.09005 * 117.50395 * 359.97438 * 20 19 18 37 37 H 1.08996 * 117.50273 * 252.50675 * 21 20 19 38 38 H 1.09006 * 117.49752 * 107.48689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.1148 -1.2622 5 6 3.5554 2.0063 -1.7708 6 1 4.2894 1.4466 -1.2102 7 6 3.9123 2.6217 -2.9519 8 7 3.0184 3.3029 -3.6348 9 14 5.6654 2.4866 -3.5827 10 1 6.4702 1.6713 -2.6377 11 1 5.6622 1.8377 -4.9184 12 1 6.2577 3.8439 -3.6932 13 6 2.3546 1.9770 1.1612 14 8 2.3313 1.3450 2.1961 15 6 2.7596 3.4286 1.1737 16 1 3.4075 3.6323 0.3211 17 6 1.5103 4.3074 1.0864 18 7 3.4808 3.7250 2.4187 19 6 4.3786 4.8748 2.2460 20 6 4.4061 5.9237 3.3595 21 6 5.5895 4.9715 3.1761 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 1.4570 1.6904 -1.9971 28 1 1.8932 3.1636 -1.0984 29 1 3.2697 3.7362 -4.4655 30 1 0.8455 4.0777 1.9190 31 1 1.8005 5.3571 1.1321 32 1 0.9947 4.1136 0.1457 33 1 3.9881 2.9158 2.7442 34 1 4.5017 5.2254 1.2213 35 1 4.5474 6.9643 3.0674 36 1 3.7576 5.7610 4.2204 37 1 5.7199 4.1821 3.9164 38 1 6.5095 5.3856 2.7633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382993930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:49 Heat of formation + Delta-G solvation = -16.076581 kcal Electronic energy + Delta-G solvation = -18017.252676 eV Core-core repulsion = 15281.334285 eV Total energy + Delta-G solvation = -2735.918391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44508 -37.36909 -35.23856 -33.83989 -32.75542 -30.48689 -28.54709 -27.06796 -24.07494 -23.12195 -22.18466 -21.72837 -20.52490 -18.25752 -16.81182 -16.30751 -15.99406 -15.41477 -14.72099 -14.50143 -14.30854 -13.97122 -13.22216 -12.76143 -12.57782 -12.29238 -12.21411 -11.77362 -11.62475 -11.49687 -11.44613 -11.33163 -11.23151 -10.95506 -10.76194 -10.51418 -10.37035 -10.14820 -10.10507 -9.76156 -8.92134 -8.60052 -7.99137 -7.72368 -6.24152 -4.31842 3.16582 3.25640 3.28925 3.39014 3.79899 4.03454 4.26829 4.46983 5.08115 5.13164 5.17924 5.28448 5.42338 5.63671 5.76757 5.79039 5.81697 5.85786 5.88642 5.94410 6.08571 6.24120 6.26575 6.31646 6.35705 6.42342 6.58470 6.65450 6.77671 7.15870 7.34138 7.55797 7.68222 7.71933 8.00953 8.31116 8.74464 9.00196 9.36411 10.82203 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.009935 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.858903 B = 2817.672376 C = 4107.604774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.594 5.594 4 C 0.232 3.768 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.517 3.483 14 O -0.569 6.569 15 C 0.068 3.932 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.642 5.642 19 C 0.022 3.978 20 C -0.172 4.172 21 C -0.198 4.198 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.350 0.650 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 1.843 6.825 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.304 3.696 14 O -0.449 6.449 15 C -0.044 4.044 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.275 5.275 19 C -0.089 4.089 20 C -0.210 4.210 21 C -0.236 4.236 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.836 1.954 7.411 7.710 hybrid contribution 1.677 -0.382 -1.176 2.083 sum 0.841 1.571 6.235 6.484 Atomic orbital electron populations 1.22112 0.96784 1.01238 1.01977 1.21254 0.93455 0.83974 1.02502 1.48214 1.62527 1.13443 1.08276 1.19544 0.97318 0.92447 0.79490 1.21542 0.95643 1.33484 1.07189 0.92192 1.24938 0.97664 0.94816 0.96313 1.69928 1.33737 1.33235 1.15762 0.86491 0.84398 0.78013 0.78921 1.19686 1.20745 1.20775 1.20445 0.76904 0.88927 0.83288 1.90582 1.55510 1.66141 1.32691 1.21539 0.97817 0.92414 0.92637 0.89058 1.21677 0.96117 0.99016 1.01885 1.60118 1.29731 1.08282 1.29375 1.22488 0.95398 0.95736 0.95231 1.23095 1.00889 0.95279 1.01731 1.23229 0.93065 1.03539 1.03749 0.92401 0.92938 0.92445 0.90790 0.90781 0.94476 0.93907 0.92513 0.92477 0.92055 0.91434 0.82857 0.87879 0.89177 0.88532 0.88759 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.23 37.16 0.38 -2.21 16 2 C 0.11 2.07 6.20 -4.04 -0.03 2.05 16 3 N -0.59 -12.54 2.47 -175.06 -0.43 -12.97 16 4 C 0.23 5.40 4.83 -5.20 -0.03 5.38 16 5 C -0.54 -13.84 8.62 -34.44 -0.30 -14.14 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -23.96 13.29 55.43 0.74 -23.23 16 9 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.52 10.98 6.74 -10.98 -0.07 10.90 16 14 O -0.57 -13.04 15.49 5.55 0.09 -12.95 16 15 C 0.07 1.31 2.14 -68.86 -0.15 1.16 16 16 H 0.09 1.92 6.03 -51.93 -0.31 1.61 16 17 C -0.13 -2.24 9.18 37.16 0.34 -1.89 16 18 N -0.64 -11.23 6.35 -100.95 -0.64 -11.87 16 19 C 0.02 0.34 6.01 -67.71 -0.41 -0.07 16 20 C -0.17 -2.20 10.46 -26.73 -0.28 -2.48 16 21 C -0.20 -2.55 10.33 -26.73 -0.28 -2.82 16 22 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 26 H 0.07 1.39 7.20 -51.93 -0.37 1.02 16 27 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.04 1.02 4.96 -51.92 -0.26 0.76 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.97 8.03 -51.93 -0.42 0.56 16 32 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 33 H 0.35 6.38 7.74 -39.29 -0.30 6.08 16 34 H 0.10 1.62 7.60 -51.93 -0.39 1.23 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -27.75 313.98 -7.60 -35.35 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.16 Total: 8.17 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.91 Total: -2.51 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.34 Total: -48.07 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.75 -7.60 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382993930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.275 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds