Wall clock time and date at job start Mon Mar 30 2020 04:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47048 * 2 1 4 4 C 1.46500 * 120.00039 * 275.82809 * 3 2 1 5 5 C 1.50697 * 109.47059 * 264.49709 * 4 3 2 6 6 H 1.07997 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99707 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00171 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99600 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46951 * 120.00226 * 9 7 5 12 12 H 1.48499 * 109.47004 * 239.99559 * 9 7 5 13 13 C 1.34773 * 119.99756 * 95.82501 * 3 2 1 14 14 O 1.21283 * 120.00040 * 4.51567 * 13 3 2 15 15 C 1.50706 * 120.00225 * 184.51121 * 13 3 2 16 16 H 1.09003 * 109.46834 * 318.30133 * 15 13 3 17 17 C 1.53001 * 109.46770 * 78.29330 * 15 13 3 18 18 N 1.46897 * 109.47431 * 198.29501 * 15 13 3 19 19 C 1.46897 * 110.99906 * 154.99968 * 18 15 13 20 20 C 1.53000 * 117.51627 * 136.28343 * 19 18 15 21 21 C 1.52997 * 60.00058 * 107.47853 * 20 19 18 22 22 H 1.09010 * 109.46776 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46977 * 299.99572 * 1 2 3 24 24 H 1.09002 * 109.47600 * 59.99944 * 1 2 3 25 25 H 1.09006 * 109.47098 * 240.00402 * 2 1 3 26 26 H 1.08991 * 109.47867 * 120.00406 * 2 1 3 27 27 H 1.08998 * 109.47518 * 24.50446 * 4 3 2 28 28 H 1.09009 * 109.46755 * 144.49796 * 4 3 2 29 29 H 0.97000 * 119.99776 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47304 * 57.95083 * 17 15 13 31 31 H 1.09005 * 109.47058 * 177.94904 * 17 15 13 32 32 H 1.09004 * 109.47622 * 297.95391 * 17 15 13 33 33 H 1.00897 * 111.00027 * 31.04438 * 18 15 13 34 34 H 1.09000 * 115.55071 * 350.58742 * 19 18 15 35 35 H 1.09006 * 117.50095 * 214.97069 * 20 19 18 36 36 H 1.09005 * 117.50395 * 359.97438 * 20 19 18 37 37 H 1.08996 * 117.50273 * 252.50675 * 21 20 19 38 38 H 1.09006 * 117.49752 * 107.48689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.1148 -1.2622 5 6 3.5554 2.0063 -1.7708 6 1 4.2894 1.4466 -1.2102 7 6 3.9123 2.6217 -2.9519 8 7 3.0184 3.3029 -3.6348 9 14 5.6654 2.4866 -3.5827 10 1 6.4702 1.6713 -2.6377 11 1 5.6622 1.8377 -4.9184 12 1 6.2577 3.8439 -3.6932 13 6 2.3546 1.9770 1.1612 14 8 2.3313 1.3450 2.1961 15 6 2.7596 3.4286 1.1737 16 1 3.4075 3.6323 0.3211 17 6 1.5103 4.3074 1.0864 18 7 3.4808 3.7250 2.4187 19 6 4.3786 4.8748 2.2460 20 6 4.4061 5.9237 3.3595 21 6 5.5895 4.9715 3.1761 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 1.4570 1.6904 -1.9971 28 1 1.8932 3.1636 -1.0984 29 1 3.2697 3.7362 -4.4655 30 1 0.8455 4.0777 1.9190 31 1 1.8005 5.3571 1.1321 32 1 0.9947 4.1136 0.1457 33 1 3.9881 2.9158 2.7442 34 1 4.5017 5.2254 1.2213 35 1 4.5474 6.9643 3.0674 36 1 3.7576 5.7610 4.2204 37 1 5.7199 4.1821 3.9164 38 1 6.5095 5.3856 2.7633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382993930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:49 Heat of formation + Delta-G solvation = -32.764209 kcal Electronic energy + Delta-G solvation = -18017.976306 eV Core-core repulsion = 15281.334285 eV Total energy + Delta-G solvation = -2736.642021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09446 -38.61136 -36.97019 -35.26937 -34.66134 -32.01012 -29.96026 -28.94993 -25.60759 -24.97928 -23.21736 -23.15749 -21.81042 -19.90174 -18.70609 -17.98835 -17.59073 -16.69448 -16.45263 -16.14338 -15.89451 -15.30979 -14.62974 -14.46190 -14.12095 -13.84837 -13.65472 -13.36641 -13.20746 -13.02347 -12.93767 -12.79855 -12.67257 -12.49848 -12.31781 -12.18498 -11.83673 -11.68705 -11.56369 -11.26897 -10.70995 -10.49093 -9.50892 -9.30239 -8.23559 -6.38040 1.36635 1.40496 1.50064 1.68889 2.20720 2.39487 2.91124 3.06245 3.12000 3.64629 4.02124 4.11276 4.19079 4.20460 4.34821 4.38050 4.47568 4.53878 4.62385 4.79872 4.80284 4.85889 4.89590 4.97924 5.03496 5.06810 5.12193 5.27484 5.32574 5.33915 5.61969 5.81640 6.02050 6.04607 6.27485 6.51971 6.78098 7.25625 7.37101 8.81847 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.009935 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.858903 B = 2817.672376 C = 4107.604774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.247 3.753 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.512 3.488 14 O -0.587 6.587 15 C 0.075 3.925 16 H 0.069 0.931 17 C -0.120 4.120 18 N -0.641 5.641 19 C -0.008 4.008 20 C -0.154 4.154 21 C -0.185 4.185 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.038 0.962 29 H 0.269 0.731 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.342 0.658 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 2.312 7.189 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.300 3.700 14 O -0.469 6.469 15 C -0.038 4.038 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.273 5.273 19 C -0.119 4.119 20 C -0.192 4.192 21 C -0.223 4.223 22 H 0.107 0.893 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.281 2.425 7.777 8.151 hybrid contribution 1.507 -0.547 -1.266 2.043 sum 1.226 1.877 6.511 6.886 Atomic orbital electron populations 1.22015 0.94455 1.03126 1.01385 1.21455 0.95399 0.82643 1.02358 1.48255 1.62557 1.14327 1.07587 1.19219 0.95906 0.92281 0.79926 1.21667 0.96360 1.33361 1.07363 0.93498 1.25587 1.01009 0.94469 0.96445 1.69999 1.35315 1.33806 1.16173 0.85588 0.80243 0.78098 0.78257 1.19904 1.20235 1.20095 1.20816 0.76470 0.89735 0.82933 1.90560 1.56438 1.66779 1.33140 1.21447 0.98264 0.91377 0.92668 0.91321 1.21603 0.95213 0.99529 1.01471 1.60208 1.30384 1.08557 1.28166 1.22561 0.97349 0.96144 0.95803 1.23151 1.00256 0.95751 1.00076 1.23310 0.93124 1.03434 1.02459 0.89308 0.93641 0.92785 0.90705 0.91073 0.95750 0.94403 0.92200 0.92225 0.90520 0.92223 0.83751 0.88784 0.87220 0.88594 0.88553 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 10.23 71.98 0.74 -3.92 16 2 C 0.10 3.85 6.20 86.38 0.54 4.38 16 3 N -0.60 -25.45 2.47 -826.15 -2.04 -27.49 16 4 C 0.25 11.69 4.83 85.63 0.41 12.11 16 5 C -0.55 -28.38 8.62 25.60 0.22 -28.16 16 6 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 7 C 0.03 1.34 5.46 84.66 0.46 1.80 16 8 N -0.91 -49.20 13.29 21.45 0.28 -48.92 16 9 Si 0.95 41.34 29.54 68.60 2.03 43.36 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 13 C 0.51 21.95 6.74 87.66 0.59 22.54 16 14 O -0.59 -27.02 15.49 -3.04 -0.05 -27.06 16 15 C 0.08 2.90 2.14 44.17 0.09 2.99 16 16 H 0.07 2.96 6.03 -2.39 -0.01 2.95 16 17 C -0.12 -4.13 9.18 71.98 0.66 -3.47 16 18 N -0.64 -22.27 6.35 -473.31 -3.00 -25.27 16 19 C -0.01 -0.24 6.01 44.92 0.27 0.03 16 20 C -0.15 -3.62 10.46 30.59 0.32 -3.30 16 21 C -0.19 -4.41 10.33 30.59 0.32 -4.10 16 22 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 2.72 8.12 -2.38 -0.02 2.70 16 26 H 0.07 2.66 7.20 -2.39 -0.02 2.65 16 27 H 0.02 1.21 8.03 -2.39 -0.02 1.19 16 28 H 0.04 1.83 4.96 -2.38 -0.01 1.82 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.37 8.03 -2.38 -0.02 2.35 16 32 H 0.06 2.13 6.35 -2.39 -0.02 2.11 16 33 H 0.34 12.52 7.74 -89.70 -0.69 11.83 16 34 H 0.09 2.94 7.60 -2.39 -0.02 2.92 16 35 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.11 2.23 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -57.84 313.98 2.18 -55.66 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.34 Total: 28.83 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.62 Total: 0.90 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.76 Total: -101.68 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -57.84 2.18 -55.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382993930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.891 kcal (2) G-P(sol) polarization free energy of solvation -57.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds