Wall clock time and date at job start Mon Mar 30 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21288 * 119.99782 * 2 1 4 4 N 1.34771 * 120.00218 * 179.97438 * 2 1 3 5 5 C 1.46505 * 120.00080 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47243 * 180.02562 * 5 4 2 7 7 C 1.52991 * 109.47164 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.46893 * 111.00098 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47250 * 185.37571 * 9 8 7 11 11 C 1.50701 * 115.55139 * 294.80834 * 10 9 8 12 12 H 1.07998 * 119.99931 * 95.20118 * 11 10 9 13 13 C 1.37881 * 119.99675 * 274.92507 * 11 10 9 14 14 N 1.31509 * 120.00118 * 355.41870 * 13 11 10 15 15 Si 1.86797 * 119.99851 * 175.42112 * 13 11 10 16 16 H 1.48500 * 109.47305 * 59.99777 * 15 13 11 17 17 H 1.48502 * 109.46877 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47169 * 299.99984 * 15 13 11 19 19 C 1.53005 * 117.49771 * 80.47079 * 10 9 8 20 20 C 1.52998 * 117.50158 * 149.12935 * 10 9 8 21 21 H 1.08998 * 109.47340 * 269.99966 * 1 2 3 22 22 H 1.08998 * 109.46916 * 30.00744 * 1 2 3 23 23 H 1.09002 * 109.46457 * 150.00254 * 1 2 3 24 24 H 0.97000 * 120.00131 * 0.02562 * 4 2 1 25 25 H 1.08996 * 109.46663 * 60.00793 * 5 4 2 26 26 H 1.08995 * 109.47442 * 300.00108 * 5 4 2 27 27 H 1.09007 * 109.46822 * 60.00280 * 6 5 4 28 28 H 1.08999 * 109.47141 * 300.01051 * 6 5 4 29 29 H 1.08998 * 109.47269 * 60.00373 * 7 6 5 30 30 H 1.08995 * 109.47367 * 299.99905 * 7 6 5 31 31 H 1.00901 * 110.99671 * 303.95659 * 8 7 6 32 32 H 1.09004 * 109.46845 * 65.38026 * 9 8 7 33 33 H 1.08997 * 109.47456 * 305.38043 * 9 8 7 34 34 H 0.96998 * 120.00611 * 185.00609 * 14 13 11 35 35 H 1.08998 * 117.50096 * 215.00821 * 19 10 9 36 36 H 1.08999 * 117.49296 * 0.02838 * 19 10 9 37 37 H 1.09004 * 117.49634 * 359.97438 * 20 10 9 38 38 H 1.08994 * 117.49846 * 144.97788 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6096 0.0010 7 6 5.6859 -2.6096 0.0022 8 7 6.1757 -3.9946 0.0015 9 6 7.6441 -4.0337 0.0020 10 6 8.1158 -5.4828 -0.1339 11 6 7.7699 -6.3898 1.0188 12 1 6.8811 -7.0018 0.9765 13 6 8.5913 -6.4425 2.1250 14 7 9.7220 -5.7710 2.1371 15 14 8.0982 -7.4678 3.6065 16 1 7.9533 -8.8885 3.1992 17 1 9.1443 -7.3581 4.6548 18 1 6.8051 -6.9724 4.1431 19 6 8.1237 -6.0946 -1.5363 20 6 9.4437 -5.7291 -0.8529 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3632 -0.8901 -0.5138 24 1 1.6960 -2.0072 0.0005 25 1 4.0088 -0.6532 0.8912 26 1 4.0097 -0.6535 -0.8888 27 1 3.7931 -3.1232 -0.8894 28 1 3.7922 -3.1237 0.8906 29 1 6.0486 -2.0961 0.8927 30 1 6.0500 -2.0954 -0.8872 31 1 5.7996 -4.5115 0.7821 32 1 8.0183 -3.6160 0.9367 33 1 8.0236 -3.4480 -0.8353 34 1 10.3340 -5.8648 2.8837 35 1 7.8787 -7.1530 -1.6252 36 1 7.7933 -5.4644 -2.3621 37 1 9.9811 -4.8588 -1.2294 38 1 10.0673 -6.5468 -0.4918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383452874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:40 Heat of formation + Delta-G solvation = -51.900090 kcal Electronic energy + Delta-G solvation = -16710.048817 eV Core-core repulsion = 13972.577002 eV Total energy + Delta-G solvation = -2737.471815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58996 -38.84578 -37.18527 -35.47595 -33.94090 -32.46235 -30.28344 -27.79675 -26.71995 -24.23947 -22.81530 -22.50657 -21.47716 -20.86059 -17.95763 -17.68460 -17.23239 -17.02215 -16.60714 -16.31981 -15.73900 -15.41902 -15.16077 -14.51129 -14.40340 -13.94411 -13.40120 -13.33743 -13.23793 -12.97243 -12.85567 -12.77657 -12.60360 -12.37335 -12.29360 -11.96302 -11.82696 -11.22281 -10.97009 -10.80412 -10.35948 -10.12961 -9.91271 -9.13618 -8.05905 -6.19045 1.44175 1.44663 1.51997 1.64183 2.27929 2.44565 3.21229 3.30460 3.74156 3.93568 4.00873 4.22026 4.23795 4.37522 4.53815 4.54999 4.65406 4.68992 4.70681 4.75737 4.79415 4.99499 5.00834 5.09375 5.10715 5.20012 5.26617 5.32710 5.44883 5.66462 5.72349 5.82898 6.33364 6.49317 6.58541 6.66281 6.90989 7.26976 7.49558 9.00516 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.004132 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.384491 B = 6774.897151 C = 7326.744909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.718 5.718 5 C 0.123 3.877 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.677 5.677 9 C 0.119 3.881 10 C 0.024 3.976 11 C -0.503 4.503 12 H 0.056 0.944 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.291 1.291 18 H -0.268 1.268 19 C -0.178 4.178 20 C -0.165 4.165 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.419 0.581 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.069 0.931 31 H 0.342 0.658 32 H -0.001 1.001 33 H 0.047 0.953 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.540 6.109 -3.608 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.371 5.371 5 C -0.002 4.002 6 C -0.147 4.147 7 C -0.071 4.071 8 N -0.308 5.308 9 C -0.011 4.011 10 C 0.023 3.977 11 C -0.541 4.541 12 H 0.074 0.926 13 C -0.177 4.177 14 N -0.549 5.549 15 Si 0.775 3.225 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.193 1.193 19 C -0.215 4.215 20 C -0.203 4.203 21 H 0.127 0.873 22 H 0.110 0.890 23 H 0.128 0.872 24 H 0.256 0.744 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.017 0.983 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.034 6.859 -4.149 17.926 hybrid contribution 0.598 -0.603 1.825 2.013 sum -15.436 6.256 -2.323 16.816 Atomic orbital electron populations 1.21895 0.87812 1.06308 1.06202 1.21719 0.92534 0.82745 0.74184 1.90707 1.72390 1.33483 1.52468 1.46060 1.07094 1.09497 1.74431 1.21162 0.80367 0.97261 1.01362 1.21555 0.94231 0.94852 1.04084 1.21867 0.95213 0.90005 0.99991 1.60411 1.07773 1.12388 1.50198 1.21187 0.87282 0.95904 0.96727 1.18908 0.96081 0.92512 0.90152 1.20696 1.09036 1.23924 1.00468 0.92618 1.25699 0.95020 0.96388 1.00625 1.70114 1.10200 1.42323 1.32221 0.85760 0.77976 0.79375 0.79385 1.19924 1.21662 1.19259 1.22844 1.01566 0.99902 0.97164 1.22408 0.91227 1.01066 1.05612 0.87266 0.88975 0.87198 0.74391 0.92967 0.92313 0.89497 0.90609 0.96504 0.91256 0.83989 0.98266 0.93414 0.93343 0.91014 0.89627 0.91408 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.30 71.24 0.73 -0.88 16 2 C 0.50 10.27 7.94 87.66 0.70 10.97 16 3 O -0.61 -19.35 17.10 -3.05 -0.05 -19.40 16 4 N -0.72 -12.40 5.56 -463.05 -2.57 -14.97 16 5 C 0.12 2.69 5.68 86.38 0.49 3.18 16 6 C -0.11 -2.35 5.59 30.59 0.17 -2.18 16 7 C 0.06 1.72 5.68 86.30 0.49 2.21 16 8 N -0.68 -24.70 6.47 -513.91 -3.32 -28.02 16 9 C 0.12 5.19 5.54 86.31 0.48 5.67 16 10 C 0.02 1.17 1.65 -52.93 -0.09 1.08 16 11 C -0.50 -26.57 8.33 25.60 0.21 -26.35 16 12 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 13 C 0.02 1.21 5.43 84.66 0.46 1.67 16 14 N -0.91 -51.69 12.65 21.45 0.27 -51.42 16 15 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 C -0.18 -7.70 9.96 30.62 0.30 -7.40 16 20 C -0.16 -7.90 9.14 30.62 0.28 -7.62 16 21 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.42 4.37 8.47 -92.71 -0.79 3.58 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.34 13.00 8.31 -89.69 -0.75 12.26 16 32 H 0.00 -0.05 8.14 -2.38 -0.02 -0.06 16 33 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 34 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 38 H 0.06 2.97 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.63 322.85 0.08 -66.55 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.50 Total: 22.54 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.23 Total: -19.64 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -5.63 Total: -94.41 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -66.63 0.08 -66.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383452874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.646 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds